mRNA_E_fasciculatus_S2_contig7593.15756.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7593.15756.1
Unique NamemRNA_E_fasciculatus_S2_contig7593.15756.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7593.15756.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQL9_ECTSI)

HSP 1 Score: 311 bits (797), Expect = 3.180e-102
Identity = 168/189 (88.89%), Postives = 178/189 (94.18%), Query Frame = 1 
Query:    1 FSLPFPRAINESDDFFKNDKSQEVARESKVLEGRLSEIRLGVEEEEAAVKALSSQQQEQSQISVKTAQIEDDEGRLDERVKAEPAFMNTHITSHPQDVSEAALGAVSTELKMASSKLESDRVDKARQVMDLHREVANNNTNLVNTKREKSRVQLRLGELSRAVKVVEDSMRGVPDPAGEALDAAKHYDW 567
            F  PFPRA  ESDDFFKNDKSQEVARESKVLEGRLSEIRLGVEEEEAAVKALSSQQQEQSQI+VKTAQIEDDEGRLDERVKAEPAF N  ++S PQDV+EA+LG+V+TEL+MASSKLESDRVDKARQVMDLHREVANNNTNLVNTKREKSRVQLRLGEL RAVKVVEDSMRG+P+P GE LDAAKHYDW
Sbjct:   46 FRPPFPRATKESDDFFKNDKSQEVARESKVLEGRLSEIRLGVEEEEAAVKALSSQQQEQSQIAVKTAQIEDDEGRLDERVKAEPAFANASVSSPPQDVTEASLGSVATELRMASSKLESDRVDKARQVMDLHREVANNNTNLVNTKREKSRVQLRLGELLRAVKVVEDSMRGLPEPPGETLDAAKHYDW 234
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BLAST of mRNA_E_fasciculatus_S2_contig7593.15756.1 vs.
Match: AAA_23 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8V1_9PHAE)

HSP 1 Score: 315 bits (808), Expect = 2.770e-100
Identity = 170/189 (89.95%), Postives = 181/189 (95.77%), Query Frame = 1 
Query:   19 RAINESDDFFKNDKSQEVARESKVLEGRLSEIRLGVEEEEAAVKALSSQQQEQSQISVKTAQIEDDEGRLDERVKAEPAFMNTHITSHPQDVSEAALGAVSTELKMASSKLESDRVDKARQVMDLHREVANNNTNLVNTKREKSRVQLRLGELSRAVKVVEDSMRGVPDPAGEALDAAKHYDWVGGVGF 585
            +AI ESDDFF+NDKSQEVARESKVLEGRLSEIRLGVEEEEAAVKALSSQQQEQSQI+VKTAQIEDDEGRLDERVKAEPAF N  + + PQDV+EA+LG+V+TEL+MASSKLESDRVDKARQVMDLHREVANNNTNLVNTKREKSRVQLRLGELSRAVKVVEDSMRG+PDP GEALDAAKHYDWVGG GF
Sbjct:  465 QAIKESDDFFQNDKSQEVARESKVLEGRLSEIRLGVEEEEAAVKALSSQQQEQSQIAVKTAQIEDDEGRLDERVKAEPAFTNASVINPPQDVTEASLGSVATELRMASSKLESDRVDKARQVMDLHREVANNNTNLVNTKREKSRVQLRLGELSRAVKVVEDSMRGLPDPPGEALDAAKHYDWVGGAGF 653
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7593.15756.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.180e-10288.89protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
AAA_232.770e-10089.95domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7593contigE_fasciculatus_S2_contig7593:4085..7239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size806
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_009230.1
Cds size369
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7593.15756.1prot_E_fasciculatus_S2_contig7593.15756.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7593 5421..7060 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842420.46532-UTR-E_fasciculatus_S2_contig7593:4084..42011696842420.46532-UTR-E_fasciculatus_S2_contig7593:4084..4201Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7593 4085..4201 +
1696842420.480211-UTR-E_fasciculatus_S2_contig7593:4772..48591696842420.480211-UTR-E_fasciculatus_S2_contig7593:4772..4859Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7593 4773..4859 +
1696842420.4976766-UTR-E_fasciculatus_S2_contig7593:5366..54201696842420.4976766-UTR-E_fasciculatus_S2_contig7593:5366..5420Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7593 5367..5420 +
1696842420.5331516-UTR-E_fasciculatus_S2_contig7593:7060..72391696842420.5331516-UTR-E_fasciculatus_S2_contig7593:7060..7239Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7593 7061..7239 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842420.5074348-CDS-E_fasciculatus_S2_contig7593:5420..54501696842420.5074348-CDS-E_fasciculatus_S2_contig7593:5420..5450Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7593 5421..5450 +
1696842420.516257-CDS-E_fasciculatus_S2_contig7593:6258..63841696842420.516257-CDS-E_fasciculatus_S2_contig7593:6258..6384Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7593 6259..6384 +
1696842420.524617-CDS-E_fasciculatus_S2_contig7593:6847..70601696842420.524617-CDS-E_fasciculatus_S2_contig7593:6847..7060Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7593 6848..7060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7593.15756.1

>prot_E_fasciculatus_S2_contig7593.15756.1 ID=prot_E_fasciculatus_S2_contig7593.15756.1|Name=mRNA_E_fasciculatus_S2_contig7593.15756.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=123bp
MNTHITSHPQDVSEAALGAVSTELKMASSKLESDRVDKARQVMDLHREVA
NNNTNLVNTKREKSRVQLRLGELSRAVKVVEDSMRGVPDPAGEALDAAKH
YDWVGGVGFICYTWYVLPCTWD*
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mRNA from alignment at E_fasciculatus_S2_contig7593:4085..7239+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7593.15756.1 ID=mRNA_E_fasciculatus_S2_contig7593.15756.1|Name=mRNA_E_fasciculatus_S2_contig7593.15756.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3155bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7593:4085..7239+ (Ectocarpus fasciculatus EfasUO2)
TTTTCGCTCCCCTTCCCCAGAGCAATCAACGAATCAGACGACTTCTTCAA
GAACGACAAGTCGCAAGAGGTTGCCAGGGAGAGCAAGGTCCTCGAGGGCC
GGCTCAGCGAGATTAGGGTGAGGCTTTCGACTTTTTATACGGTCTTGTTG
TTGTTTTGTTTTTTTTTTAGACGAAAGAAACGCCGCAGGTCTTCGCTGCT
GGTTGTATGTAGCACTGAGACAAACACGCTGCTCTTTGTTGCCGTCTGTT
TGGCAGCGGCACGCCACGAAACAGCAGTACCTCGAGTTGAAGGTTTGACT
TACGCGGGACCAGAGATGCAACTCTGAAGAATAGGAACCGTCCAACAGGG
CAGAATTTGAAATGTGGTTTATTCGGAGAGCCAGACATTCCTTCAGACCA
GACATTCACATTTCTTTTTTTACGGCACGGTCAGACCTCTAGAGACCGTA
TCTTCTCTTCGAGGAACTGTGAATTGTACACCGTCCTCCTTGTTTTGGAC
GTGTCAGCAACAGCACGGTATGCCCAAAAACAAAAAACACGGCGGGGGAG
GGGCATAACCAGTCGGGAGGGGGGGGTGATTTGTGCCATGTGTGAGAAAC
GCTACCTTGTCACAACCCATGGGGGATGTACCCACGCCACCCCCCCCATG
ATCTACTCGTTTGCGAAACTGCCGCGTTTGTTTGACAGTTGGGCGTCGAA
GAGGAGGAGGCGGCGGTCAAGGCTCTCAGCAGCCAGCAGCAGGAGCAGAG
CCAGATCTCCGTCAAGACCGCACAGGTGTCAACTTGTCTCCGTTCACACC
TTTCCCTTCCCAAGTCTGTTTCTGTGAGATCATTATGTCGTGGCTTGGTC
ATGAATGACTGCTGTGTGTATGACCGTGTCATGGCCTATCACGACACAAG
TAACGGAATGTCATGACAACATCATGACCAAGTGGTGACAGATGATAACC
AAGTGATGACAGTATCATGACCAAGTCGCAATTTTAGCAGGGAGCAAGCC
ATGACTCTGCGGAAAGAGTCGACTTGAAATTGGCGTGTCACAATAGCACT
CTACTGTTGGCATTCGCGGTATTGAGGCAACATGCGTCTTAACCCTCTCG
TGTCAGCCCGTGCGGCCGACGCAATTCATTCCTAAAACCACACCCAACCG
GTTCGAAGTCGACCCAACCCCCCGGCTCATCGGAACAAACTTTGCGATTT
TCCATCCATGGATGATTTGGAATTATTTTCTCGTCACCGCCTGCTGAAAA
TCGATCGGCGAACGGGTCAACCGATGATAAAGATCGAGGACGATGAGGGG
AGGCTGGACGAGAGGGTCAAGGCAGAGCCGGCGTTCATGAACACCCACAT
CACGAGCCACCCGCAGGTACTTTGCAAAGTTGTCAGTTGTTGGTTGTGGA
AAGTCATGGTGGTCGATACATCTGATGCTGTTTTTCCCTCTTGTCTTGCT
GTTGGTGGTTTGGCGTTCGTTCATGCATGTTTCGGTGTGCGTCCGTATCT
ACGTTCTTGCGGTCGTTGTGCCAAAGACCAGGAGCTACAGCCGCGTGACT
AGCGAACGACTCAATAATCATGCTAACTACAAAGCGAGAATACACTCACG
AATTTTGTGGTAACTGGTCTTGCCACAGCAGTGCTGCTAATTTGACCAGT
GCTGTTCTTTTTCTTTTTTTTTTGTGCGTGTATTTGGTTTTGTTGCGAAA
AGAGCGGCATTCTCCCGAAAGTGACACCGAGACTGCTGTCGCGATGAGAG
CCCTTTTTTTTTTTTTCAAAGGTGGTTCCCAAGCACCCCAGCGTTGAACC
TTACCTAGCAGCCAGCCAGTGTATGGTAGCCTTTGGTCGGCAGCGGCGGT
GGCGACGACGCGAGCCAAAGAGAGTGAACCTCCGTCCCAAGAGTCGACGG
TTCTTCTCGGCGGGCGTTGCTGACGCCAGCCAATGCACCAGGTGTTAGAG
GCAATTTTCTCGTGTCACTGCTACTGCTGTGTAGCTTGCCGGCTTTTTTC
ACGCAGCGCGGAATGAAATCTTTGTGTACCTCCTCGTCTTGAAAGTCTGC
GTGCTTGTTTTCCGGCTGTACAGTAGCGTGTGCCGCCTTCACGCTCCGCG
GAATGCTGCAGTATGCGTACCCTCTCGTGCTTACCCGCGTGGGTTCGGAC
ACACACGCACACACGAACACGCAGGACGTTTCGGAGGCCGCCCTGGGGGC
GGTGTCGACGGAGCTCAAGATGGCGTCGTCAAAGCTGGAGAGCGACCGCG
TCGACAAGGCTAGGCAGGTCATGGACCTGCACCGTGAGGTCGCCAACAAC
GTGAGAAGAGTTACAAAACAGAGAGCGCATGCAAGAGTTGTTGCGCTTTT
CTTTGTTGTTTGTTGTTCGTCAGCTTAGGAGCCCCCGTGCACCCCCTCCC
CGCTTTCTCAAATGAACCTTCTCGTCGTGTTCGTAGCACCAAAGAACTAT
CCGCCCCTCTTCCGGGAGGCTCGCTAATAGTATCGAATACCCTCCCCCCT
GATTTGGCACAGCAAACGCGAGGATGAGGACGATCAGGTCCTGGTTCATC
CCTTGTGAAACGTAACCTGGGCCGGCGAAAACCCGGCATATTGCTCCGTC
CCGGCATTTTAACGATGCAAGGTCAATGGTCTATCGGCATGCGTTAACCT
GGTTACAACCCCCCCCCGCCCTTTTGTCCGCATTTTTGGTGCTGATGTCG
CGGTACACACGTTTCCTTTCTTCCTTACGATGCAATCGACCACTGCACTG
CTCTTGCCTCCAGAACACTAACCTGGTCAACACCAAGCGCGAGAAGTCGC
GCGTGCAGCTCCGCCTCGGCGAGCTTTCGAGAGCGGTGAAGGTGGTGGAG
GATAGCATGAGGGGGGTACCCGATCCCGCAGGCGAGGCGCTGGACGCGGC
GAAGCACTATGATTGGGTGGGTGGCGTGGGGTTTATCTGTTACACTTGGT
ACGTTTTACCCTGTACCTGGGACTAGAGGTTCATTCTTTTGCGTAGTTCG
CAGTCGCAACTACTGCTCTGTTCATCACGTGCTATTATAGTATGATTTTC
ATGGGGGAAAGGGCTAGAGTGTACCTTGGTATCCCATGTGCTTGTTGTAC
TCGAGCCATATTCGGCCTAAATCTCTCGCCACCTCCCTCTCTGCGTTTCT
GTGTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7593:4085..7239+

>mRNA_E_fasciculatus_S2_contig7593.15756.1 ID=mRNA_E_fasciculatus_S2_contig7593.15756.1|Name=mRNA_E_fasciculatus_S2_contig7593.15756.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=369bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7593:4085..7239+ (Ectocarpus fasciculatus EfasUO2)
ATGAACACCCACATCACGAGCCACCCGCAGGACGTTTCGGAGGCCGCCCT
GGGGGCGGTGTCGACGGAGCTCAAGATGGCGTCGTCAAAGCTGGAGAGCG
ACCGCGTCGACAAGGCTAGGCAGGTCATGGACCTGCACCGTGAGGTCGCC
AACAACAACACTAACCTGGTCAACACCAAGCGCGAGAAGTCGCGCGTGCA
GCTCCGCCTCGGCGAGCTTTCGAGAGCGGTGAAGGTGGTGGAGGATAGCA
TGAGGGGGGTACCCGATCCCGCAGGCGAGGCGCTGGACGCGGCGAAGCAC
TATGATTGGGTGGGTGGCGTGGGGTTTATCTGTTACACTTGGTACGTTTT
ACCCTGTACCTGGGACTAG
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