mRNA_E_fasciculatus_S2_contig7591.15754.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7591.15754.1
Unique NamemRNA_E_fasciculatus_S2_contig7591.15754.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7591.15754.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7591contigE_fasciculatus_S2_contig7591:4498..4983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size470
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-01_004880.1
Cds size378
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842420.2780113-UTR-E_fasciculatus_S2_contig7591:4497..45171696842420.2780113-UTR-E_fasciculatus_S2_contig7591:4497..4517Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7591 4498..4517 +
1696842420.322899-UTR-E_fasciculatus_S2_contig7591:4911..49831696842420.322899-UTR-E_fasciculatus_S2_contig7591:4911..4983Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7591 4912..4983 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842420.2897387-CDS-E_fasciculatus_S2_contig7591:4517..46821696842420.2897387-CDS-E_fasciculatus_S2_contig7591:4517..4682Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7591 4518..4682 +
1696842420.3035183-CDS-E_fasciculatus_S2_contig7591:4698..49111696842420.3035183-CDS-E_fasciculatus_S2_contig7591:4698..4911Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7591 4699..4911 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7591.15754.1prot_E_fasciculatus_S2_contig7591.15754.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7591 4518..4911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7591.15754.1

>prot_E_fasciculatus_S2_contig7591.15754.1 ID=prot_E_fasciculatus_S2_contig7591.15754.1|Name=mRNA_E_fasciculatus_S2_contig7591.15754.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=126bp
MLMEVAPGAGSRGQTTTAEQVNNCCTCMHHHWWNTHTREDNEHAEEKTEG
PFFLFGVETLIQRGARVCVWERSHSYVYGHEIHANSPRKLCGMRQYRKTA
TTYNRGVDEMDPASQYIAPLAGITV*
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mRNA from alignment at E_fasciculatus_S2_contig7591:4498..4983+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7591.15754.1 ID=mRNA_E_fasciculatus_S2_contig7591.15754.1|Name=mRNA_E_fasciculatus_S2_contig7591.15754.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=486bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7591:4498..4983+ (Ectocarpus fasciculatus EfasUO2)
AAACAAAGGCGAACGAAAGAATGCTCATGGAAGTAGCACCCGGAGCGGGC
TCGCGCGGACAAACCACGACTGCTGAACAGGTGAATAATTGCTGTACTTG
TATGCATCATCATTGGTGGAACACACACACAAGGGAAGACAACGAACACG
CAGAGGAAAAAACAGAAGGACCCTTCTTTTTATTTTGTGGATACACAAAT
GGGGGTTGAGACTTTGATACAGCGGGGCGCTCGTGTGTGTGTATGGGAGA
GAAGTCACAGCTATGTGTACGGCCACGAAATCCATGCGAACAGTCCGAGA
AAGCTGTGTGGCATGCGCCAATACCGGAAAACAGCAACAACGTACAATAG
AGGGGTGGATGAGATGGATCCTGCTTCACAGTATATAGCACCGCTTGCTG
GAATCACAGTTTAAACCTCTTTGGGGGTTGCTCCCTAGCACCTCGCACCC
GCCCCACGTCTCACACCAATTTTGACGCCTTGACCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7591:4498..4983+

>mRNA_E_fasciculatus_S2_contig7591.15754.1 ID=mRNA_E_fasciculatus_S2_contig7591.15754.1|Name=mRNA_E_fasciculatus_S2_contig7591.15754.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=378bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7591:4498..4983+ (Ectocarpus fasciculatus EfasUO2)
ATGCTCATGGAAGTAGCACCCGGAGCGGGCTCGCGCGGACAAACCACGAC
TGCTGAACAGGTGAATAATTGCTGTACTTGTATGCATCATCATTGGTGGA
ACACACACACAAGGGAAGACAACGAACACGCAGAGGAAAAAACAGAAGGA
CCCTTCTTTTTATTTGGGGTTGAGACTTTGATACAGCGGGGCGCTCGTGT
GTGTGTATGGGAGAGAAGTCACAGCTATGTGTACGGCCACGAAATCCATG
CGAACAGTCCGAGAAAGCTGTGTGGCATGCGCCAATACCGGAAAACAGCA
ACAACGTACAATAGAGGGGTGGATGAGATGGATCCTGCTTCACAGTATAT
AGCACCGCTTGCTGGAATCACAGTTTAA
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