mRNA_E_fasciculatus_S2_contig759.15749.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig759.15749.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ1_ECTSI) HSP 1 Score: 270 bits (689), Expect = 3.650e-81 Identity = 180/309 (58.25%), Postives = 202/309 (65.37%), Query Frame = 1
Query: 301 MSAAVSDAPASXXXXXXXXXXXD-VEAPAASLDPTRDHQLRPGGHATSSGDAAAAELATDVDAGNAAASAGGAQPDSTPRPMETSSLPFLAGMAAMMSMIFILGDLMNKRMLHPVSSGVFLLSVSYCVAMLRRQWARAGD-TWAGHNNKFTKEAREELITYFVFGTDPEEPPPEAGXXXXXXXXXXXXXXXXXXXXASSDELQVSRTSSRKWRRESQRSSGDGDDDATVGSASVSGGVGMQNGGIDANNANTGGSVSANTPVPSTGPCSPAPPEDEEV-GEGEKAEQDQRGGVRNSPNIRTEPLTCVSV 1218
MSAAVS+APAS D VEAPA LDPTRD QLRPGGH T+SGDAAA ELAT +DAG+AA AGGAQ +TPR +E SSLPFLAG+A ++S IFILGDL+NKRMLHP S VFLLSVSYCVAMLRRQWA G T G NN FTKEAR+ELITYFVFG PE P EAG AS DELQVSRTSSR+WRR G A VS G +NG IDANNA+TGGS+SANTP+PSTGPCSPAP E+E + G+ A + V SP T +T +
Sbjct: 1 MSAAVSNAPASAASAASTTMATDDVEAPA--LDPTRD-QLRPGGHPTTSGDAAAVELATGLDAGDAAGPAGGAQLYTTPRALEGSSLPFLAGLAGIISTIFILGDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWASTGGGTREGRNNSFTKEARKELITYFVFGAGPEGLPTEAGAGAGAGKKGNRPKQQERGNGASGDELQVSRTSSRRWRRXXXXXXXXXXXXXXXG-AGVSDGGAARNGRIDANNADTGGSLSANTPMPSTGPCSPAPLEEEVLDGDAATAATAEDAAVTASPGHATAAVTAAAT 305
BLAST of mRNA_E_fasciculatus_S2_contig759.15749.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ0_ECTSI) HSP 1 Score: 239 bits (610), Expect = 1.200e-70 Identity = 151/188 (80.32%), Postives = 160/188 (85.11%), Query Frame = 1
Query: 262 LSGGEVDARRRAEMSAAVSDAPASXXXXXXXXXXXDVEAPAASLDPTRDHQLRPGGHATSSGDAAAAELATDVDAGNAAASAGGAQPDSTPRPMETSSLPFLAGMAAMMSMIFILGDLMNKRMLHPVSSGVFLLSVSYCVAMLRRQWARAGD-TWAGHNNKFTKEAREELITYFVFGTDPEEPPPEAG 822
LSGGEVDARRRAEMSAAVS APA XXXXXXXXXXX EAP +LDPTRD QLRPGGHAT+SGDAAA ELATD+DAG+AAA AG QP++TPR E SSLP L+GMAAMMSMIFILGDL+NKRMLHPVS+GVFLLSVSYCVAMLRRQWA G T G NN FTKEAREELITYFVFG PE P EAG
Sbjct: 7 LSGGEVDARRRAEMSAAVSHAPAXXXXXXXXXXXXXXEAP--TLDPTRD-QLRPGGHATTSGDAAAVELATDLDAGDAAAPAGSEQPNNTPRGREGSSLPLLSGMAAMMSMIFILGDLVNKRMLHPVSTGVFLLSVSYCVAMLRRQWASTGGGTREGCNNSFTKEAREELITYFVFGAGPEGLPTEAG 191
BLAST of mRNA_E_fasciculatus_S2_contig759.15749.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDD0_9PHAE) HSP 1 Score: 164 bits (416), Expect = 1.710e-44 Identity = 99/141 (70.21%), Postives = 113/141 (80.14%), Query Frame = 1
Query: 301 MSAAVSDAPASXXXXXXXXXXX-DVEAPAASLDPTRDHQLRPGGHATSSGDAAAAELATDVDAGNAAASAGGAQPDSTPRPMETSSLPFLAGMAAMMSMIFILGDLMNKRMLHPVSSGVFLLSVSYCVAMLRRQWARAGDT 720
MSAAVS+APAS DVEAP +L PTRD QLRPGGHAT GDAAA ELATD+DAG+AAA AGGAQ ++TPRP+E SSLPFLAG+AA++S IFI+GDL+NKRMLHP S VFLLSVSYCVAMLRRQWA G++
Sbjct: 1 MSAAVSNAPASAASAAATMATAGDVEAP--TLYPTRD-QLRPGGHATMPGDAAAVELATDLDAGDAAAPAGGAQLNTTPRPLEGSSLPFLAGLAAIISTIFIVGDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWASTGES 138
BLAST of mRNA_E_fasciculatus_S2_contig759.15749.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY0_9PHAE) HSP 1 Score: 162 bits (409), Expect = 1.530e-42 Identity = 87/120 (72.50%), Postives = 88/120 (73.33%), Query Frame = 2
Query: 1271 DDPARAHSDSGEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCKTDLRQAARPDDRSRSISXXXXXXXXXXXXXXXXXXXXARVGRASGGGAG--FTGDNAV 1624
DDPARA D+GEWSTGQACIVCF DYEPGDRLARLPCRHVYHAQCIDEWLDRAKLP CPLCKTDLR A PDDRSRSIS ARVG SGGG G FTGDNAV
Sbjct: 142 DDPARA-CDTGEWSTGQACIVCFSDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPDDRSRSISTVGGAGTSVNA---------ARVGGGSGGGEGVEFTGDNAV 251
BLAST of mRNA_E_fasciculatus_S2_contig759.15749.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH7_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 2.950e-15 Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 2
Query: 1307 WSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCKTDLRQAARPDDRSRS 1501
WS ++CI+CFG+Y GD L RLPCRH YHA+CID WLD CPLCK+ L + P + S +
Sbjct: 72 WSCSESCIICFGEYAEGDVLCRLPCRHTYHAECIDAWLDSPGHSWCPLCKSSLLLPSEPRNSSEN 136
BLAST of mRNA_E_fasciculatus_S2_contig759.15749.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW5_ECTSI) HSP 1 Score: 86.7 bits (213), Expect = 2.820e-14 Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 2
Query: 1307 WSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCKTDLRQAARPDDRS 1495
WS+G++CI+CFG+Y GD L RLPCRH YHA+CID WLD CPLCK+ L + P + S
Sbjct: 452 WSSGESCIICFGEYAEGDVLCRLPCRHTYHAECIDAWLDGPGHSWCPLCKSSLLPPSEPRNGS 514
BLAST of mRNA_E_fasciculatus_S2_contig759.15749.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX3_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 6.190e-14 Identity = 36/55 (65.45%), Postives = 41/55 (74.55%), Query Frame = 2
Query: 1301 GEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCKTDL 1465
GE STG +CIVCFGDY G+ L RL C H+YHA+CIDEWLD CPLCKTD+
Sbjct: 244 GEGSTGGSCIVCFGDYTYGEELCRLRCGHLYHAKCIDEWLDGENHGWCPLCKTDI 298
BLAST of mRNA_E_fasciculatus_S2_contig759.15749.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K661_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 7.000e-13 Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = 2
Query: 1301 GEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCKTDL 1465
GE ST +CIVCFGDY G+ L RL C H+YHA+CIDEWLD CPLCKTD+
Sbjct: 251 GEGSTRGSCIVCFGDYTYGEELCRLRCGHLYHAKCIDEWLDGENHGWCPLCKTDI 305
BLAST of mRNA_E_fasciculatus_S2_contig759.15749.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GPC0_9FUNG) HSP 1 Score: 65.5 bits (158), Expect = 4.590e-9 Identity = 26/59 (44.07%), Postives = 36/59 (61.02%), Query Frame = 2
Query: 1325 CIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCKTDLRQAARPDDRSRS 1501
C +C +YE GD+L LPC+H +H+ CID W CP+CK D QA+R R+R+
Sbjct: 44 CAICLEEYEVGDKLRELPCKHYFHSDCIDPWFKEVH-GICPICKRDYSQASRRTPRTRT 101
BLAST of mRNA_E_fasciculatus_S2_contig759.15749.1 vs.
Match: Hypothetical (protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813E405_POLGL) HSP 1 Score: 67.0 bits (162), Expect = 7.610e-9 Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 2
Query: 1325 CIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCKTDLRQA 1474
C VC DYEPGDR+ RLPC H H++C++ WL R +P CP+C+T L++A
Sbjct: 182 CRVCLVDYEPGDRVVRLPCMHFAHSRCMETWLVR--VPRCPVCQTSLQEA 229 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig759.15749.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig759.15749.1 >prot_E_fasciculatus_S2_contig759.15749.1 ID=prot_E_fasciculatus_S2_contig759.15749.1|Name=mRNA_E_fasciculatus_S2_contig759.15749.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=348bp MSAAVSDAPASAASAAAAIAAADVEAPAASLDPTRDHQLRPGGHATSSGDback to top mRNA from alignment at E_fasciculatus_S2_contig759:2741..7736- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig759.15749.1 ID=mRNA_E_fasciculatus_S2_contig759.15749.1|Name=mRNA_E_fasciculatus_S2_contig759.15749.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4996bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig759:2741..7736- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig759:2741..7736- >mRNA_E_fasciculatus_S2_contig759.15749.1 ID=mRNA_E_fasciculatus_S2_contig759.15749.1|Name=mRNA_E_fasciculatus_S2_contig759.15749.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1044bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig759:2741..7736- (Ectocarpus fasciculatus EfasUO2)back to top |