mRNA_E_fasciculatus_S2_contig759.15748.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig759.15748.1
Unique NamemRNA_E_fasciculatus_S2_contig759.15748.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig759.15748.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig759contigE_fasciculatus_S2_contig759:2264..2787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size524
Hectar predicted targeting categoryother localisation
Exons1
Cds size405
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842419.8100052-UTR-E_fasciculatus_S2_contig759:2263..22771696842419.8100052-UTR-E_fasciculatus_S2_contig759:2263..2277Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig759 2264..2277 +
1696842419.8354151-UTR-E_fasciculatus_S2_contig759:2682..27871696842419.8354151-UTR-E_fasciculatus_S2_contig759:2682..2787Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig759 2683..2787 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842419.823814-CDS-E_fasciculatus_S2_contig759:2277..26821696842419.823814-CDS-E_fasciculatus_S2_contig759:2277..2682Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig759 2278..2682 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig759.15748.1prot_E_fasciculatus_S2_contig759.15748.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig759 2278..2682 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig759.15748.1

>prot_E_fasciculatus_S2_contig759.15748.1 ID=prot_E_fasciculatus_S2_contig759.15748.1|Name=mRNA_E_fasciculatus_S2_contig759.15748.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=135bp
MRVQPLTGCGLPNKNIQILLCRVSPPPSSLPETPYSQHFPIFSRPTFLQG
WNTPCARRRVIATSKWKTGQGFHSIDWRASCPLRPRVNLANQRTACLQRC
QLLIDMHTSRPPTPPAKQGCVLKTFRARPSNTHT*
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mRNA from alignment at E_fasciculatus_S2_contig759:2264..2787+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig759.15748.1 ID=mRNA_E_fasciculatus_S2_contig759.15748.1|Name=mRNA_E_fasciculatus_S2_contig759.15748.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=524bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig759:2264..2787+ (Ectocarpus fasciculatus EfasUO2)
ACACCGTCACTGCCATGCGAGTGCAGCCATTAACCGGATGCGGTTTACCA
AACAAAAATATTCAAATATTGTTGTGCCGTGTTTCTCCTCCTCCCTCCTC
CCTTCCCGAAACACCATACTCTCAACACTTCCCCATCTTTTCGCGGCCTA
CTTTTCTCCAGGGTTGGAACACCCCCTGCGCACGTAGACGTGTTATCGCA
ACTTCCAAGTGGAAAACCGGTCAGGGTTTCCATTCAATCGATTGGCGTGC
ATCTTGCCCCCTCCGGCCCCGTGTCAACCTTGCCAATCAGCGAACTGCGT
GCTTGCAACGCTGCCAGCTACTGATTGACATGCACACTTCACGCCCTCCC
ACTCCACCTGCGAAACAAGGATGCGTACTCAAAACGTTTCGCGCCCGGCC
AAGCAACACACACACATGACTCCTCTTTCATCACACTAAATTAAAATAGA
AAAAAAAACACCACCGATTCTGTTCTACACGGCGTTGTCGCCCGTAAACC
CCGCCCCGCCCCCGCTTGCTCTTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig759:2264..2787+

>mRNA_E_fasciculatus_S2_contig759.15748.1 ID=mRNA_E_fasciculatus_S2_contig759.15748.1|Name=mRNA_E_fasciculatus_S2_contig759.15748.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=405bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig759:2264..2787+ (Ectocarpus fasciculatus EfasUO2)
ATGCGAGTGCAGCCATTAACCGGATGCGGTTTACCAAACAAAAATATTCA
AATATTGTTGTGCCGTGTTTCTCCTCCTCCCTCCTCCCTTCCCGAAACAC
CATACTCTCAACACTTCCCCATCTTTTCGCGGCCTACTTTTCTCCAGGGT
TGGAACACCCCCTGCGCACGTAGACGTGTTATCGCAACTTCCAAGTGGAA
AACCGGTCAGGGTTTCCATTCAATCGATTGGCGTGCATCTTGCCCCCTCC
GGCCCCGTGTCAACCTTGCCAATCAGCGAACTGCGTGCTTGCAACGCTGC
CAGCTACTGATTGACATGCACACTTCACGCCCTCCCACTCCACCTGCGAA
ACAAGGATGCGTACTCAAAACGTTTCGCGCCCGGCCAAGCAACACACACA
CATGA
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