mRNA_E_fasciculatus_S2_contig7583.15744.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7583.15744.1 vs.
Match: Ribosome (biogenesis protein WDR12 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI35_ECTSI) HSP 1 Score: 486 bits (1250), Expect = 2.110e-164 Identity = 245/278 (88.13%), Postives = 255/278 (91.73%), Query Frame = 3
Query: 3 NASLEAAAILRGHDNSISAAHAAGSGS-ESGGAPRAYTGDWSGHVCVWDVACLEGGHADGDDNGSGVGSAPQGTKRRKTDKGAAAPA---VSELTPMADFRAHAQAVTGLAGPGGVGGPQAAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSESGRMLATGHPDARVRIWDTRTQGETITRASLSSHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAHQGKALCCGWQEGKIVSGGEDGAVKTYVVPERNHD 824
N+SLEAAAILRGH NSISAAHAA SGS +SGGAPRAYTGDWSGHVC+WDVACLEGGHADGDD QGTKRRKTD GAAA V+ELTP+A FRAHAQAVTGLAGPGGVG PQ AAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCS+SGRMLATGHPDARVRIWDTRTQGET+TRASLSSHKQWVT VKWAPGSETMVLSC HDG+VKLWDIRSTLPLHSAQAH+GKALCCGWQ+GKIVSGGEDGAVKTYVVPERNHD
Sbjct: 196 NSSLEAAAILRGHANSISAAHAAASGSGDSGGAPRAYTGDWSGHVCLWDVACLEGGHADGDD--------AQGTKRRKTDTGAAAXXXXXVTELTPLASFRAHAQAVTGLAGPGGVGRPQTAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTRTQGETLTRASLSSHKQWVTGVKWAPGSETMVLSCSHDGSVKLWDIRSTLPLHSAQAHRGKALCCGWQDGKIVSGGEDGAVKTYVVPERNHD 465
BLAST of mRNA_E_fasciculatus_S2_contig7583.15744.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ32_9PHAE) HSP 1 Score: 392 bits (1007), Expect = 1.660e-131 Identity = 191/206 (92.72%), Postives = 198/206 (96.12%), Query Frame = 3
Query: 216 GTKRRKTDKGAAAPAVS---ELTPMADFRAHAQAVTGLAGPGGVGGPQAAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSESGRMLATGHPDARVRIWDTRTQGETITRASLSSHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAHQGKALCCGWQEGKIVSGGEDGAVKTYVVPERNHD 824
GTKRRKTD GAAA AV+ ELTP+A FRAH+QAVTGL GPGGVGGPQ AAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCS+SGRMLATGHPDARVRIWDTRTQGET+TRASLSSHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAHQGKALCCGWQ+GKIVSGGEDGAVKTYVVPERN+D
Sbjct: 10 GTKRRKTDTGAAAAAVAAVTELTPLAGFRAHSQAVTGLVGPGGVGGPQTAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTRTQGETLTRASLSSHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAHQGKALCCGWQDGKIVSGGEDGAVKTYVVPERNND 215
BLAST of mRNA_E_fasciculatus_S2_contig7583.15744.1 vs.
Match: Ribosome (biogenesis protein WDR12 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE58_9STRA) HSP 1 Score: 186 bits (473), Expect = 9.820e-49 Identity = 114/274 (41.61%), Postives = 149/274 (54.38%), Query Frame = 3
Query: 15 EAAAILRGHDNSISAAHAAGSGSESGGAPRAYTGDWSGHVCVWDVACLEGGH-ADGDDNGSGVGSAPQGTKRRKTDKGAAAPAVSELTPMADFRAHAQAVTG--LAGPGGVGGPQAAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGC------SESGRMLATGHPDARVRIWDTRTQ-GETITRASLSSHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAHQGKALCCGWQEGKIVSGGEDGAVKTYVV 806
E AA+L GH NS++A S S +GG A +GDW G +C+WD+A +G AD + G GV KRRK G A V EL P A F+AH+QAVTG LAGP TLY+ S D ++K WDA+RQDC+ T+ KAV C+ + + +LATGHPD R+R+WD RT+ GET+T A+L++ WV VKWA GS S L + AH+G ALC W G + SGG+DG V+T+ V
Sbjct: 243 EQAAVLSGHQNSVAAV----SFSPAGGTHTAASGDWDGRMCLWDLAAAQGAAGADAEAGGPGV-------KRRKRAAGEADAVVVELEPTAVFKAHSQAVTGVYLAGP---------------DTLYTGSWDHSLKAWDAQRQDCVRTMACAKAVACMDAQGGDDAAAASGLLATGHPDGRIRVWDVRTKAGETLTLATLAARGGWVYGVKWAHGSAYNXXXXXXXXXXXXXXXXSGAALRTLPAHKGAALCVAWHAGGVASGGDDGVVRTFKV 490
BLAST of mRNA_E_fasciculatus_S2_contig7583.15744.1 vs.
Match: Ribosome (biogenesis protein WDR12 homolog n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0R3_9STRA) HSP 1 Score: 150 bits (379), Expect = 6.080e-36 Identity = 82/236 (34.75%), Postives = 126/236 (53.39%), Query Frame = 3
Query: 111 TGDWSGHVCVWDVACLEGGHADGDDNGSGVGSAPQGTKRRKTDKGAAAPAVSELTPMADFRAHAQAVTGLAGPGGVGGPQAAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSESGRMLATGHPDARVRIWDTRT----QGETITRASLSSHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAHQ--GKALCCGWQEGKIVSGGEDGAVKTY 800
+GDW G +C+W V S + + ++R+ A AV E +P F+AH+ ++G++ S+T+ ++S D ++KTWD E Q+ + TLN K VT LG + ++ATGHPD VR+WD R+ +G SH+ W++ V+W+P ++ S HDG+VK+WDIRS++PLH+ +AH KALC + E I SGG D VK +
Sbjct: 249 SGDWDGGLCIWKVP-------------SDTNESAKPREKRRKGSSDANDAVREASPFYCFKAHSNNISGISWSS-----------ESSNTIITSSWDHSIKTWDVESQNNILTLNGSKVVTALGRCHNSDVVATGHPDCTVRLWDMRSSSKNEGNVFDNTLRPSHRSWISAVEWSPVDPFVMASTSHDGSVKVWDIRSSVPLHTIKAHAKGSKALCLSFTEKAIFSGGSDCIVKQF 460
BLAST of mRNA_E_fasciculatus_S2_contig7583.15744.1 vs.
Match: Ribosome (biogenesis protein WDR12 homolog n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GAP8_9STRA) HSP 1 Score: 147 bits (372), Expect = 1.500e-34 Identity = 86/270 (31.85%), Postives = 132/270 (48.89%), Query Frame = 3
Query: 36 GHDNSISAAHAAGSGSESGGAPRAYTGDWSGHVCVWDVAC-----LEGGHADGDDNGSGVGSAPQGTKRRKTDKGAAAPAVSELTPMADFRAHAQAVTGLAGPGGVGGPQAAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSESGRMLATGHPDARVRIWDTRTQGETITRASLSSHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAHQGKALCCGWQEG--KIVSGGEDGAVKTYVVPERNHD 824
GH+ S+ A A + G +G W VC+W VA + +G+D G + + K+RK AA A+ + P + H +V+ L G P STL+S S DR+++ WD R+ C LN K VT + + + +ATGH D +VR+WD+R GE I + SL SH+ W+T V+W+P ++ S D +KLWD+RS++PLH+ ++H K W ++S G D ++ Y V D
Sbjct: 279 GHERSVEALDAV----QIGNFAVMGSGGWDQSVCIWKVALGNEDDVTAAKEEGEDEGDAANGSDR--KKRKVKGAKAASALKTVKPASVLSGHTDSVSALTW-ADRGSP---------STLFSGSWDRSIRAWDVVREVCTIKLNGNKVVTAIAHNPTTATIATGHADEQVRLWDSRVTGEAIVKLSLKSHEAWITSVQWSPSRPHLLASASQDQTIKLWDVRSSVPLHTLKSHTNKVFGLSWDASGTMLMSAGADSMLRAYRVGTEKSD 532
BLAST of mRNA_E_fasciculatus_S2_contig7583.15744.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SDZ9_9STRA) HSP 1 Score: 147 bits (371), Expect = 1.800e-34 Identity = 93/255 (36.47%), Postives = 128/255 (50.20%), Query Frame = 3
Query: 111 TGDWSGHVCVWDVACLEGGHADGDDNGSGVGSAPQGTKRRKTDKGA-------------AAPAVSELTPMADFRAHAQAVTGLAGPGGVGGPQAAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSESGRMLATGHPDARVRIWDTRT------QGETITRASLS----SHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHS--AQAHQGKALCCGWQEGKIVSGGEDGAVKTY 800
+GDW G +C W + L GG D G V + G K AA +V E+ P + RAH ++GL+ G +TL + S D +VK WD E+ DC+ TLN + VT LG + ++ATGHPD VR+WD RT ++ T+ S S SHK WV+ V+W+P ++ S HDG VK+WDIRS+LPLH+ AQ K LC + +G I SGG D V+ +
Sbjct: 280 SGDWDGGLCFWKIPSLSGGG----DGGMNVDNVDAGKKXXXXXXXXXXXXXXXXXXXXEAAISVVEVQPFSTIRAHNSNLSGLSFGYNSSG----------NTLLTGSWDHSVKVWDIEKSDCILTLNGARVVTSLGRCHNSDVVATGHPDCTVRLWDMRTGMNASNSKQSSTQVSDSILKPSHKSWVSAVEWSPTDPYVLASTSHDGTVKMWDIRSSLPLHTIRAQPKGQKGLCLAYGDGAIYSGGSDCIVRKF 520
BLAST of mRNA_E_fasciculatus_S2_contig7583.15744.1 vs.
Match: Ribosome (biogenesis protein YTM1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K4H4_FISSO) HSP 1 Score: 145 bits (366), Expect = 3.520e-34 Identity = 94/277 (33.94%), Postives = 136/277 (49.10%), Query Frame = 3
Query: 15 EAAAILRGHDNSISAAHAAGSGSESGGAPRAYTGDWSGHVCVWDVACLEGGHADGDDNGSGVGSAPQGTKRRKTDKGA-AAPAVSELTPMADFRAHAQAVTGLAGPGGVGGPQAAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSESGRMLATGHPDARVRIWDTRTQGETIT-----RASLSSHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAH-QGKALCCGWQEGKIVSGGEDGAVKTYVVPERNHD 824
+ A+ + GH+ +IS+A + G + + +GDW G + +W++ + D + + K+ K DK + A LTP +AH+ +TG+A S + + S D ++K W+ ERQDCL TLN+ + VTCL S LATGHPD VR+WD RT+ ET + SHK WV+ V+W + + S HDG VK WDIRS+LPLHS +A + K L I GG D VK +P+ D
Sbjct: 212 QVASCIEGHNAAISSA-------DFGSSSQLASGDWGGELYLWNL------NQDISEQAT--------VKKAKKDKSSETASHFRSLTPTGSMKAHSSQITGIAWNS-------------SDQMITGSWDHSIKVWNVERQDCLLTLNSSRVVTCLDASRVSAALATGHPDCTVRLWDVRTKSETSSWSVSDNTFRPSHKAWVSAVQWFDAYQLVTTS--HDGMVKWWDIRSSLPLHSIRAFSKNKGLALSTTSSAIYVGGTDNRVKRLQIPQSGMD 452
BLAST of mRNA_E_fasciculatus_S2_contig7583.15744.1 vs.
Match: Ribosome (biogenesis protein WDR12 homolog n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L654_9EUKA) HSP 1 Score: 143 bits (360), Expect = 1.610e-33 Identity = 86/253 (33.99%), Postives = 127/253 (50.20%), Query Frame = 3
Query: 36 GHDNSISAAHAAGSGSESGGAPRAYTGDWSGHVCVWDVACLEGGHADGDDNGSGVGSAPQGTKRRKTDKGAAAPAVSELTPMADFRAHAQAVTGLAGPGGVGGPQAAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSESGRMLATGHPDARVRIWDTRTQGETITRASLSSHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAHQGKALCCGWQ-EGKIVSGGEDGAV 791
GH +S+ AA A +G R +G W G +C+W A+ D + KR +T PAVSE P++ +AH++ ++GL ++ LYSAS D V+ WD + + + KAV CL S + + TGH D +R+WD R +G ++ +HK WV+ V WAP ++ S HDG+V+LWD RST+PLH AH+ K+LC W ++VSGG DG +
Sbjct: 215 GHTDSVEAACANPAGD------RFCSGGWDGQLCIWRAPDTSVSTAEVDHEPA--------AKRART------PAVSEAHPLSKMQAHSECLSGLCWR-------------TAALLYSASWDGTVREWDVNAESSTSAVTSQKAVLCLDVSLASASIVTGHSDHCLRVWDVRQRG--LSARLTLAHKSWVSGVAWAPHQPLLLASASHDGSVRLWDTRSTVPLHELPAHKPKSLCVSWDGSDRLVSGGADGVL 432
BLAST of mRNA_E_fasciculatus_S2_contig7583.15744.1 vs.
Match: Ribosome (biogenesis protein WDR12 homolog n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IFE5_KLENI) HSP 1 Score: 142 bits (358), Expect = 2.370e-33 Identity = 95/264 (35.98%), Postives = 132/264 (50.00%), Query Frame = 3
Query: 27 ILRGHDNSISAAHAAGSGSESGGAPRAYTGDWSGHVCVWDVACLEGGHADGDDNGSGVGSAPQGTKRRKTDKGAAAPAVSELTPMA--DFRAHAQAVTGLAGPGGVGGPQAAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCS-ESGRMLATGHPDARVRIWDTRTQGETITRASLSSHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAHQGKALCCGW-QEGKIVSGGEDGAVKTYVV 806
+LRGH +I + A+ SG+E +G W + VW V+ D +D GS AP KR++ + AAPA + A H+Q V+ A + T++SAS D +V+TWD + T+ K + L E G +LATG D +RIWD+R T + L SHK W+T VKW +LS HDG VK+WD+RS +PLH+ QAH KALC W QE IVSGG D ++ + +
Sbjct: 191 VLRGHSAAIQSVVASPSGNEVA------SGSWDTTIKVWSVS------RDAEDGGS----AP---KRQRVEDSGAAPAGEQEAREARVTLEGHSQCVS-------------AVDWSRADTIHSASWDHSVRTWDVQAAVNTSTITGSKVILALSVGGEGGALLATGGADPAIRIWDSRDSSSTGSAIQLLSHKGWITAVKWHKTRTHQLLSTSHDGTVKMWDVRSKVPLHTVQAHTVKALCVDWFQEATIVSGGADNQLRFHAL 422
BLAST of mRNA_E_fasciculatus_S2_contig7583.15744.1 vs.
Match: Hypothetical (protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GL41_9STRA) HSP 1 Score: 142 bits (357), Expect = 1.080e-32 Identity = 96/273 (35.16%), Postives = 143/273 (52.38%), Query Frame = 3
Query: 36 GHDNSISAAHAAGSGSESGGAPRAYTGDWSGHVCVWDVACLEGGHADGDDNGSGVGSAPQGTKRRKTDKGAAAPAVSELTPMADFRAHAQAVTGLAGPGGVGGPQAAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSESGRMLATGHPDARVRIWDTRTQ----GETITRASLS------SHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAHQG--KALCCGWQEGKIVSGGEDGAVKTYVVPERN 818
GH NSI + A G+ S+ +GDW G +C+W+V GD + V +AP TK+ KT + A AV E+ P A ++AHA +++ L + SS L S+S D ++K WD ERQDC+ TLN + V+ + + ++ATGHPD +R+WD RTQ GE +S SHK W++ ++W+P ++ + HDG +KLWDIRS++PLHS +AH+ K LC + + G +G E N
Sbjct: 241 GHSNSIESV-ALGASSDK---TFLASGDWMGGLCLWEVPR-------GD---AAVETAP--TKKAKTATNSTATAVREVQPKASWKAHASSISHLCY------THDSVSSSTSSKLISSSWDHSLKVWDVERQDCILTLNGNRVVSAMDRCSNSDVVATGHPDCTMRLWDMRTQSGGGGEKEGSTGVSEKTFRPSHKSWISALQWSPTDPFILATNSHDGILKLWDIRSSVPLHSTRAHEKGEKGLCLAFD-----ASGSNGXXXXXXXXETN 486 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7583.15744.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7583.15744.1 >prot_E_fasciculatus_S2_contig7583.15744.1 ID=prot_E_fasciculatus_S2_contig7583.15744.1|Name=mRNA_E_fasciculatus_S2_contig7583.15744.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=183bp MADFRAHAQAVTGLAGPGGVGGPQAAAVVVPSSTLYSASLDRAVKTWDAEback to top mRNA from alignment at E_fasciculatus_S2_contig7583:3595..7193- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7583.15744.1 ID=mRNA_E_fasciculatus_S2_contig7583.15744.1|Name=mRNA_E_fasciculatus_S2_contig7583.15744.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3599bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7583:3595..7193- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7583:3595..7193- >mRNA_E_fasciculatus_S2_contig7583.15744.1 ID=mRNA_E_fasciculatus_S2_contig7583.15744.1|Name=mRNA_E_fasciculatus_S2_contig7583.15744.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=549bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7583:3595..7193- (Ectocarpus fasciculatus EfasUO2)back to top |