mRNA_E_fasciculatus_S2_contig758.15740.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig758.15740.1
Unique NamemRNA_E_fasciculatus_S2_contig758.15740.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig758.15740.1 vs.
Match: EF (hand family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Q6_ECTSI)

HSP 1 Score: 472 bits (1214), Expect = 5.280e-155
Identity = 234/263 (88.97%), Postives = 246/263 (93.54%), Query Frame = 1 
Query:    1 SRFTEPGVHPSFFQEVWPDPGPHHGSLPQGLSDLEARSLMFLKQRVIERAQEKPLPSVRGLWRLLWPRTYADAVGKIGPAEFREGMAAFEVPVTQCEVWVVTTAFDTDNRGQICLDKLMHFFRAGGLCEARRKVVHELFRGLDSANTGAVPLSGIRAACDFSSSPAVIKGKACEEEIRTEFLQHLEN-QQEGMGESNAMVTAEHFQDAFRDIGTACTSLAACSWEAAPLQEEEKDGGHFDTDADGDVGEALQVFMVVVSSVGG 786
            SRFTEPGVHPSFFQEVW DPGPHH SLP+GLSDLEARSLMFLK RVIERAQEKPLPSVRGLWRLLWPRTY DAVGK+GPAEFREGMA FEVPVT+CEVW VTTAFDTDNRGQICLDKLMHFFRAGGL EARRKVVH+LFRGLDSANTGAVPLS IRAACDFSSSPAVI+GKACEEEI TEFLQHL+N +QEG+GES++MVTAEHFQDAFRDIGTACTSLAACSWEAA LQEE+KD GH DTDADG+ GEAL  FM VVSSVGG
Sbjct:  223 SRFTEPGVHPSFFQEVWRDPGPHHASLPRGLSDLEARSLMFLKNRVIERAQEKPLPSVRGLWRLLWPRTYVDAVGKVGPAEFREGMAEFEVPVTKCEVWAVTTAFDTDNRGQICLDKLMHFFRAGGLSEARRKVVHKLFRGLDSANTGAVPLSSIRAACDFSSSPAVIEGKACEEEITTEFLQHLQNNEQEGLGESSSMVTAEHFQDAFRDIGTACTSLAACSWEAASLQEEKKDRGHLDTDADGNAGEAL--FMGVVSSVGG 483
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BLAST of mRNA_E_fasciculatus_S2_contig758.15740.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H9_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 3.220e-88
Identity = 152/195 (77.95%), Postives = 159/195 (81.54%), Query Frame = 1 
Query:    1 SRFTEPGVHPSFFQEVWPDPGPHHGSLPQGLSDLEARSLMFLKQRVIERAQEKPLPSVRGLWRLLWPRTYADAVGKIGPAEFREGMAAFEVPVTQCEVWVVTTAFDTDNRGQ-------------------------ICLDKLMHFFRAGGLCEARRKVVHELFRGLDSANTGAVPLSGIRAACDFSSSPAVIKG 510
            SRFTEPGVHPSF QEVWPD GPHH SLP+GLSDLEARSLMFLK+RVIERAQEKPLPS+RGLW    PRTYADAVGKIGPAEFREGMA FEVPVT+CEVWVVTTAFDT+NRGQ                         ICLDKL+HFFRAGGL EARRKVVHELFRGLDSANTGAVPLS IRA CDFSSSPAVI+G
Sbjct:  263 SRFTEPGVHPSFSQEVWPDAGPHHASLPRGLSDLEARSLMFLKKRVIERAQEKPLPSMRGLW----PRTYADAVGKIGPAEFREGMAEFEVPVTKCEVWVVTTAFDTNNRGQEDAQRHGLHRSFKTKATNDFPVILQICLDKLIHFFRAGGLSEARRKVVHELFRGLDSANTGAVPLSSIRAVCDFSSSPAVIRG 453
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BLAST of mRNA_E_fasciculatus_S2_contig758.15740.1 vs.
Match: Serine/threonine-specific (protein kinase-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Q5_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 1.770e-26
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = -3 
Query: 2362 SPEAGRDCMICASAPVQTRFLPCRHSLACSACASLLRARGDRCPVDRARIIAFETGQFQVTYTGD 2556
            SPEAGRDCMICASAPVQTRFLPCRHSLAC++CASLLRARGDRCPVDRARII  ETGQFQVTYTGD
Sbjct: 1490 SPEAGRDCMICASAPVQTRFLPCRHSLACTSCASLLRARGDRCPVDRARIIGLETGQFQVTYTGD 1554
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BLAST of mRNA_E_fasciculatus_S2_contig758.15740.1 vs.
Match: Calcyphosine (2 n=1 Tax=Coturnix japonica TaxID=93934 RepID=A0A8C2YE60_COTJA)

HSP 1 Score: 62.8 bits (151), Expect = 9.130e-7
Identity = 39/140 (27.86%), Postives = 69/140 (49.29%), Query Frame = 1 
Query:  214 DAVGKIGPAEFREGMAAFEVPVTQCEVWVVTTAFDTDNRGQICLDKLMHFFRAGGLCEARRKVVHELFRGLDSANTGAVPLSGIRAACDFSSSPAVIKGKACEEEIRTEFLQHLENQQEGMGESNAMVTAEHFQDAFRDI 633
            + +G +  A+F+E +  F + V + +   +    D +  G++   + +H   AG + E R+  V + +  LD   TG++P+  IR        P V+ GKA EEEI++ FL+ LE      GE    V+   F+D +  +
Sbjct:  163 NGIGFLSQADFKEALKLFHLEVPEQDFESLWLILDDNKSGKVNYGEFVHAI-AGEMNEYRKAFVRKAYMKLDFNKTGSIPMVDIRKCYCAKKHPLVLAGKATEEEIKSSFLETLEESCSNPGE----VSYSEFEDYYEGL 297
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig758.15740.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
EF5.280e-15588.97hand family protein n=1 Tax=Ectocarpus siliculosus... [more]
Uncharacterized3.220e-8877.95protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Serine/threonine-specific1.770e-2693.85protein kinase-like protein n=2 Tax=Ectocarpus Tax... [more]
Calcyphosine9.130e-727.862 n=1 Tax=Coturnix japonica TaxID=93934 RepID=A0A8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig758contigE_fasciculatus_S2_contig758:134..4791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size2597
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-11_000040.1
Cds size702
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig758.15740.1prot_E_fasciculatus_S2_contig758.15740.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig758 251..3013 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842418.9226086-UTR-E_fasciculatus_S2_contig758:133..2501696842418.9226086-UTR-E_fasciculatus_S2_contig758:133..250Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig758 134..250 +
1696842419.0107093-UTR-E_fasciculatus_S2_contig758:3013..47911696842419.0107093-UTR-E_fasciculatus_S2_contig758:3013..4791Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig758 3014..4791 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842418.9351566-CDS-E_fasciculatus_S2_contig758:250..3301696842418.9351566-CDS-E_fasciculatus_S2_contig758:250..330Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig758 251..330 +
1696842418.9456084-CDS-E_fasciculatus_S2_contig758:1041..10971696842418.9456084-CDS-E_fasciculatus_S2_contig758:1041..1097Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig758 1042..1097 +
1696842418.9562538-CDS-E_fasciculatus_S2_contig758:1517..16001696842418.9562538-CDS-E_fasciculatus_S2_contig758:1517..1600Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig758 1518..1600 +
1696842418.9670014-CDS-E_fasciculatus_S2_contig758:1969..21421696842418.9670014-CDS-E_fasciculatus_S2_contig758:1969..2142Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig758 1970..2142 +
1696842418.9846563-CDS-E_fasciculatus_S2_contig758:2433..24961696842418.9846563-CDS-E_fasciculatus_S2_contig758:2433..2496Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig758 2434..2496 +
1696842418.999568-CDS-E_fasciculatus_S2_contig758:2766..30131696842418.999568-CDS-E_fasciculatus_S2_contig758:2766..3013Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig758 2767..3013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig758.15740.1

>prot_E_fasciculatus_S2_contig758.15740.1 ID=prot_E_fasciculatus_S2_contig758.15740.1|Name=mRNA_E_fasciculatus_S2_contig758.15740.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=234bp
MFLKQRVIERAQEKPLPSVRGLWRLLWPRTYADAVGKIGPAEFREGMAAF
EVPVTQCEVWVVTTAFDTDNRGQICLDKLMHFFRAGGLCEARRKVVHELF
RGLDSANTGAVPLSGIRAACDFSSSPAVIKGKACEEEIRTEFLQHLENQQ
EGMGESNAMVTAEHFQDAFRDIGTACTSLAACSWEAAPLQEEEKDGGHFD
TDADGDVGEALQVFMVVVSSVGGKTASNKSNVT*
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mRNA from alignment at E_fasciculatus_S2_contig758:134..4791+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig758.15740.1 ID=mRNA_E_fasciculatus_S2_contig758.15740.1|Name=mRNA_E_fasciculatus_S2_contig758.15740.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4658bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig758:134..4791+ (Ectocarpus fasciculatus EfasUO2)
TCGAGGTTCACCGAACCCGGCGTCCACCCTTCGTTTTTCCAAGAGGTTTG
GCCGGACCCTGGCCCTCATCATGGGTCGCTTCCCCAAGGCCTCAGTGACC
TGGAAGCCCGGAGCTTGATGTTCCTCAAGCAACGGGTCATCGAGAGGGCA
CAGGAGAAGCCGCTGCCGTCAGTGCGCGGGCTGTGGCGCTTGCTTTGGTG
GGTTTGTGGTAGTTTGTGATCGTGATGCTGTTCGTCGTGTAGTTGTTTGT
TCGTGGTCTGTTTTTGGCGTTTATTGATGTCCTGTTGCTAACACCCAAGC
CCGCTTTTCACTCGTAGGCTCTATAAACCATCTTTTTGTGTGTGCGTGAT
GGAACTCCCGAGCAACCATACCAGTAGTGCGAAGATGACGTCACCAGACT
GTATGCCATCGAGGCCGCCGATATTGGTCTTTGAAAGCTTCTCTCGAAGC
CTTTGAACAATTAAATCCAGGGGTGTTCAAGCCGGACATACACCGATACA
CTTAACCAATATTGTGTTGTTGAGGATACCCGAAGTTTGGCATACAACAG
AGGCGGAGGGGCGCTGTCGCTGTGTCCTCTGTTGGCAGATATGCGTACAA
CCCTTATTTTTCCCAGAACCAAGCCGAAAGAGGATGGCTTAAAGTGCGCC
TAGAAGAGATGGGGTGGGCTGGGCAGACAGACATATGTGTGGGCTCAATC
ACAGGCTTTCCAGCGAGGCACGCTATGGAAAATGTTGTAGAACATGTCGT
CGTTTGTCTTAAGGCTACAATACTCCTGTATAGACTGTGTGAGGCACAGT
ATGAACCTCGCCAATAACAAACAGAGCTTCCCTCTTTGCCGGTCTTGCCG
CTAACGCTCTATACCTATCGGATCGTGTTTTATCGTGTGCGTTTTAATCG
TTTGGCAGGCCCCGGACGTACGCGGATGCTGTGGGGAAGATCGGCCCGGC
GGAGTTCCGAGAGGGTGAGTCAGACTCACTCGCGGCTTCGGTCTGTTGCT
GGCCTATTAATGGAATGCTACGTAAGCGCACTTGTCGTAATCAGCTCTGG
CTTGTTTCATTTAGGACGAATGGTGTCGATGCTGTTGCCGCTGTTCCGTC
CCTTGTGGTCGTTGTTGATCGTGCTCTGTTTTCGATCCGCGGCACGGCTA
CAGTAGAATGCGTGTGTTGATGGGTATCAGGCCAACCACAAACAAATTTG
CTCAGGATTGTTCTCATGAGCTTGCTGTGTGTTGCGTGGTAATAGTCCAG
TTCCTGTCGTTTTGGTAGACACAGCGCCACAGATGTCATGTTTGGCATCG
TGTACCTCAATTGATTTTGCAGAACCATGCTTTACGTTTGATCTAAGGCC
ACCGCCGTCCCTCCCCCACCATTCCTGATGGCAGGGATGGCGGCGTTTGA
GGTCCCCGTGACCCAGTGCGAGGTTTGGGTCGTTACGACTGCGTTCGACA
CAGACAACCGTGGCCAGGTAGGACGTGGAGTAAAGCACACACGAACGCGG
TCATCTGGAACGTCACCTCTTCGTGAATGTTGACGGTGTCGAACCATTTG
ACCGACGCTGAGCCTGAACCGTATTACCCGCTTGTTTGAGACCTGGTCAG
TCTTGGCACCCTGTTTCTTGCTTGCATTGGTAGCGGCGGTCTCCTTCGGC
AACTTTCCGTTTGTATCCCCCAACAGCCGAAGCAAGGCCATTGTCCTATT
GTTTAGGGTGCGGCTTTCGTAACAGAACCAAAGTGTCCTGGTCGAACGCT
TTCTTCAGGAACAAGCCCAAACGATGTGGTCTTCACCCTCCGTTCAATCA
CCAAACCCACACAATTTCCCCCGATATTGAGTACAGATCTGTTTGGACAA
GCTGATGCATTTCTTTCGGGCTGGAGGACTGTGTGAGGCTCGCCGCAAGG
TTGTCCACGAGCTATTCCGGGGCCTTGATTCCGCAAACACAGGAGCAGTA
CCGCTGAGCGGCATTCGAGCGGCGTGCGACTTTTCAAGCTCGCCGGCGGT
GATCAAAGGGTACGTGGTGATGAGTTTGTCGTTTCACGGGGACCCAACAT
AGGAGGAAACTTCCATACCGAGTGATGTGGTGATGCAACAACCTATAAAA
GGAGTCCCCTTCATCACGATCGAGCCGTACACGGCCGTTCCAGGGCACCG
GCTGTGATGGCGGAGGGGTGGTCATGATGTCACCATATACGATGGGGTTT
TGGTAGTGGCGTTGTCCACTTTTTTTTTACCCTGGCTGAACCGTCCCTGA
TCACATCCGTCTTGACCCACAACTTGCTTACATGCGTCGGACTTGTCCAG
GAAAGCATGCGAAGAGGAGATAAGGACAGAGTTTCTACAGCATCTCGAAA
ACCAACAAGAAGGGTGAGCGGACAACGATTTGTATTCGTTAGGTTAACGC
CCGCAAGGCGCCAAGTCGAGCTACCCGTCTCCATCTGGAGCCAAGTGTTG
CCGCTCGAACACGAAACACACATCGACAATGTCCACGCCCAACGAGTGCA
CGTGGGTGCACACACCTCCTGGGAAACCTTTGGTGGGGGGGACCTCTTTC
CCCTGTTGCACTTACGGTGTCATCCGGCTGCTGTTCTACTCCCCCCCCCC
CTCTCTCTTTCTCTTTGTCGACCATTTCACCAGGATGGGCGAGTCCAATG
CAATGGTAACTGCGGAGCATTTCCAGGATGCGTTTCGCGACATCGGAACC
GCCTGCACTTCGTTGGCAGCGTGCTCATGGGAAGCTGCTCCCCTCCAAGA
AGAGGAAAAGGACGGGGGGCACTTCGATACTGATGCCGATGGGGATGTCG
GCGAAGCGCTACAAGTATTCATGGTCGTTGTATCGTCCGTTGGAGGGAAA
ACCGCGTCAAACAAGAGTAACGTAACGTGACACTGACCCAAGGGAGGGAA
GCGGTTGTTGTTGCCTGGTTGGATCGTAAGATCGTTGGCATCACATGATG
ACATGTCGATCGAGACGAAGCCTGGTTTTGGCATTTGTTCCGAGTAATGC
AGTAATGGGCATGGAATGCTTCAGCGCTTGTAGTCAGTGGCAAGTACATA
CTGCTGTACTTCCGGAGCATCGGAATTATACATGACGATCATTGTGAGTG
AGAATACGGCGTTTTGCGATGGGACTGGTGGAACGGAGGCCAAAGCATCG
ACAGGCAGTAGGATGGTAGGATGGTAGGATGGCAGGATGGTAGGATGGCG
AAGCAACTTCCCCGTGACACATTCATTCCTGACACATTCATTCCTGACAC
ATTCATTCCTGACACATTCATTCCGGTATTTCTCAGAATGAAGTGTGACA
GACCCTCACCCAGTGGATTGCACGGCAGCAGCCGAAGGAATCGTGGCCAA
TTGGAATCATGGCCGAACAGGCACACGCCCGAGCGGGGACGTAGGACATT
GAACAAAATAAGTAGTGAGCAACACATTTCTAACCGACCTGCTGGTAGGA
AAAATAGACAACACGGCACAGCACCAAGAAATGGTAACAGCATCCACAAG
TAGATCCAAGTCCGTCGGCACGCGAAGCAGCAAAAGTTGTCCCCGCAGAA
ATCATCGCCAAACCATATCCAAAGCCCTGATGTCAAAACAGCAATGCCAC
GAACTGTCTTCAACAACAGATCCTTGACGTGTCGTCAGGACATTCATTGC
GCGACGGACCGCACGACCCTCTACCCGCTGACCACCAGATAGGCAGTCCC
TCCTGAACCTTGACGATCAACCCGGAACAAATGGCTTAAAGCGAACAACT
CGACTTTCATGCAGGGCCGAAAAGTCACAACCGTAGCGGATAGCTGACAA
CCACGCCGTCAGCAAACACCGGTGAAAGGTGAAAGCGATCTCCGAAACAG
GAAAATACCGCAATACCGCGACGCACGCCCGAGTCCATTTTTGCCACAGA
GCTAAACAAACAAACAACTATGTACGATTGTAAGCAGAAGCCGGTCGAAA
ACTCCGACCTCAGCCACGACGTTGCCGCTGCAGCTTCCGTTCTCACAGCA
GTTCCGTCCAGAGCGTGCAGCACACAGCTTCTCATCTCGAAAACCCTTTC
CCGGAACAGTATCCCCATACACACAGCACCAGTCACAAGTCCGGGACGAA
GCGCGGACGTTTTCGCAGAACGGTTGGGCTTAGCGTCGCCCGCCCGCTCC
CCCCTACCAGCCGCCATGTCTTTCGTTCCACACCAGCCCCGCACCGATCG
AGTCAACCGGCCACCCACCCGTACGATAGCGCCACTGGTCAAGGCTTGAG
CAGCACCCCATGAGTCCGTGGGGTTTGGCTTGGGGTCATCTAACCCTGGC
CCTGACCGTCACCTACCCCCTAGCCCAAACCAAGTCGTTATGTCCTATAT
TCTCGGTTGGCATAGATGCTGGATGCTGACGTGGGGTTGTCGGCGTTTGA
CGGACATCCCCCCGAAGGCTCAGTCCCCCGTGTACGTGACTTGAAACTGC
CCGGTCTCGAAGGCGATGATTCTCGCTCGGTCCACCGGGCAGCGGTCTCC
CCGTGCCCTGAGCAGCGACGCGCAGGCGCTACACGCGAGGCTGTGCCGAC
AAGGCAAGAAACGCGTTTGCACCGGCGCGGAGGCACAAATCATGCAGTCC
CGCCCAGCCTCCGGGCTAGGCGACGGAGCGGCCATCGGCGATGATGCCGC
TGCGGCCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig758:134..4791+

>mRNA_E_fasciculatus_S2_contig758.15740.1 ID=mRNA_E_fasciculatus_S2_contig758.15740.1|Name=mRNA_E_fasciculatus_S2_contig758.15740.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=702bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig758:134..4791+ (Ectocarpus fasciculatus EfasUO2)
ATGTTCCTCAAGCAACGGGTCATCGAGAGGGCACAGGAGAAGCCGCTGCC
GTCAGTGCGCGGGCTGTGGCGCTTGCTTTGGCCCCGGACGTACGCGGATG
CTGTGGGGAAGATCGGCCCGGCGGAGTTCCGAGAGGGGATGGCGGCGTTT
GAGGTCCCCGTGACCCAGTGCGAGGTTTGGGTCGTTACGACTGCGTTCGA
CACAGACAACCGTGGCCAGATCTGTTTGGACAAGCTGATGCATTTCTTTC
GGGCTGGAGGACTGTGTGAGGCTCGCCGCAAGGTTGTCCACGAGCTATTC
CGGGGCCTTGATTCCGCAAACACAGGAGCAGTACCGCTGAGCGGCATTCG
AGCGGCGTGCGACTTTTCAAGCTCGCCGGCGGTGATCAAAGGGAAAGCAT
GCGAAGAGGAGATAAGGACAGAGTTTCTACAGCATCTCGAAAACCAACAA
GAAGGGATGGGCGAGTCCAATGCAATGGTAACTGCGGAGCATTTCCAGGA
TGCGTTTCGCGACATCGGAACCGCCTGCACTTCGTTGGCAGCGTGCTCAT
GGGAAGCTGCTCCCCTCCAAGAAGAGGAAAAGGACGGGGGGCACTTCGAT
ACTGATGCCGATGGGGATGTCGGCGAAGCGCTACAAGTATTCATGGTCGT
TGTATCGTCCGTTGGAGGGAAAACCGCGTCAAACAAGAGTAACGTAACGT
GA
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