mRNA_E_fasciculatus_S2_contig7573.15737.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7573.15737.1
Unique NamemRNA_E_fasciculatus_S2_contig7573.15737.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7573.15737.1 vs.
Match: Bromo (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE7_ECTSI)

HSP 1 Score: 386 bits (991), Expect = 1.180e-125
Identity = 233/253 (92.09%), Postives = 239/253 (94.47%), Query Frame = 1 
Query:   37 AAAGQDWRGWYSDVPAVRRLVCTMLCRAMVRGSDEAAAVLMPAAKAAVKRMADQRWLWASLGELVQRSADASAAXXXX-PVKAGGGVVA-GVAGKKGGKEKGAVPRVLKPETLLLVLKLFSTGLELALVSDAVFVKALELVAGLLPLASPXXXXXXXXXXXXXX--GGDKSKPQPSALGKGAVTALLPRSALEDVVNQAAARAARPPRRPLSEAEELRAKEAFAKVFAKSPPGWANKVSEYRAKLAEKSKKGG 783
            A AGQDWRGWYSDVPA+RRLVCTMLCRAMVRGSDEAA VLMPAAKAAVKRMADQRWLWASLGELVQRSADASAA     P K GGGVVA GVAGKKGGKEKGAVPRVLKPETLLLVL+LFSTGLELALV+DAVF+KALELVAGLLPLASPXXXXXXXXXXXXXX  GGDKSKP+PSA GKGAV ALLPRSALEDVVNQAAARAARPPRRPLSEAEELRAKEAFAKVFAKSPPGWANKVSEYRAKLAEKS+KGG
Sbjct:  538 ATAGQDWRGWYSDVPAIRRLVCTMLCRAMVRGSDEAAGVLMPAAKAAVKRMADQRWLWASLGELVQRSADASAAAVAAAPAKDGGGVVAAGVAGKKGGKEKGAVPRVLKPETLLLVLELFSTGLELALVTDAVFIKALELVAGLLPLASPXXXXXXXXXXXXXXXXGGDKSKPKPSAPGKGAVAALLPRSALEDVVNQAAARAARPPRRPLSEAEELRAKEAFAKVFAKSPPGWANKVSEYRAKLAEKSRKGG 790
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BLAST of mRNA_E_fasciculatus_S2_contig7573.15737.1 vs.
Match: Bromo (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMY2_9PHAE)

HSP 1 Score: 377 bits (969), Expect = 2.290e-125
Identity = 228/251 (90.84%), Postives = 236/251 (94.02%), Query Frame = 1 
Query:   43 AGQDWRGWYSDVPAVRRLVCTMLCRAMVRGSDEAAAVLMPAAKAAVKRMADQRWLWASLGELVQRSADASAAXXXX--PVKAGGGVVA-GVAGKKGGKEKGAVPRVLKPETLLLVLKLFSTGLELALVSDAVFVKALELVAGLLPLASPXXXXXXXXXXXXXX-GGDKSKPQPSALGKGAVTALLPRSALEDVVNQAAARAARPPRRPLSEAEELRAKEAFAKVFAKSPPGWANKVSEYRAKLAEKSKKGG 783
            AGQDWRGWYSDVPA+RRLVCTMLCRAMVRGSDEAAAVLMPAAKAAVKRMADQRWLWASLGEL QRSADASAA      PV  GGGVVA GVAGKK GKEKG +PRVLKPETLLLVL+LFSTGLELALV+DAVF+KALELVAGLLPLASPXXXXXXXXXXXXXX GGDKSKP+PSA GKGAVTALLPRSALEDVVNQAAARAARPPRRPLS+AEELRAKEAFAKV AKSPPGWANKVSEYRAKLAEKS+KGG
Sbjct:  281 AGQDWRGWYSDVPAIRRLVCTMLCRAMVRGSDEAAAVLMPAAKAAVKRMADQRWLWASLGELAQRSADASAATAAAAAPVNEGGGVVAAGVAGKKCGKEKGTMPRVLKPETLLLVLELFSTGLELALVTDAVFIKALELVAGLLPLASPXXXXXXXXXXXXXXXGGDKSKPKPSAPGKGAVTALLPRSALEDVVNQAAARAARPPRRPLSQAEELRAKEAFAKVLAKSPPGWANKVSEYRAKLAEKSRKGG 531
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7573.15737.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Bromo1.180e-12592.09domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Bromo2.290e-12590.84domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7573contigE_fasciculatus_S2_contig7573:6177..7187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score387.5
Seed ortholog evalue4.9e-105
Seed eggNOG ortholog2880.D7FZE7
Preferred nameBPTF
Model size786
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.histone acetyltransferase activity
EggNOG OGsCOG5076@1,KOG1472@2759
Cds size783
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842418.775612-CDS-E_fasciculatus_S2_contig7573:6177..65971696842418.775612-CDS-E_fasciculatus_S2_contig7573:6177..6597Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7573 6178..6597 -
1696842418.7922893-CDS-E_fasciculatus_S2_contig7573:6824..71871696842418.7922893-CDS-E_fasciculatus_S2_contig7573:6824..7187Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7573 6825..7187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7573.15737.1prot_E_fasciculatus_S2_contig7573.15737.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7573 6178..7187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7573.15737.1

>prot_E_fasciculatus_S2_contig7573.15737.1 ID=prot_E_fasciculatus_S2_contig7573.15737.1|Name=mRNA_E_fasciculatus_S2_contig7573.15737.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=261bp
AETAAEIEEDATAAAGQDWRGWYSDVPAVRRLVCTMLCRAMVRGSDEAAA
VLMPAAKAAVKRMADQRWLWASLGELVQRSADASAAAAAAPVKAGGGVVA
GVAGKKGGKEKGAVPRVLKPETLLLVLKLFSTGLELALVSDAVFVKALEL
VAGLLPLASPPPPPTADAAAAAVAGGDKSKPQPSALGKGAVTALLPRSAL
EDVVNQAAARAARPPRRPLSEAEELRAKEAFAKVFAKSPPGWANKVSEYR
AKLAEKSKKGG
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mRNA from alignment at E_fasciculatus_S2_contig7573:6177..7187-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7573.15737.1 ID=mRNA_E_fasciculatus_S2_contig7573.15737.1|Name=mRNA_E_fasciculatus_S2_contig7573.15737.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1011bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7573:6177..7187- (Ectocarpus fasciculatus EfasUO2)
GCCGAGACCGCCGCAGAGATCGAAGAGGACGCGACCGCCGCTGCCGGCCA
GGACTGGCGGGGGTGGTACAGCGATGTCCCCGCCGTCCGGCGGCTGGTCT
GCACGATGCTGTGCCGCGCGATGGTGAGGGGGAGCGACGAGGCCGCCGCG
GTGCTGATGCCGGCGGCAAAGGCGGCGGTTAAGAGAATGGCGGACCAGCG
GTGGCTTTGGGCGAGCCTGGGCGAGCTGGTGCAGAGGAGCGCGGACGCAT
CGGCGGCGGCGGCGGCAGCGCCGGTGAAAGCGGGCGGAGGCGTCGTCGCC
GGCGTAGCCGGGAAGAAAGGCGGGAAAGAGAAAGGGGCGGTGCCGCGGGT
TCTGAAGCCGGAGGTGACCGGTGCTGTTCTTGCTGTGTTCACCTTCGGAA
GACAACATTAGTGTTGATCTTGGTGATATTAGTTGCCCAGTTCAAAGGGC
CAACTGACGGATCAAACGACACTTTTTTTCCCCCTCTTCTCCGTCGGCAG
TTTAAAGCAAAACTGGTTTCGCGCAAACGCCCCCCGTTAAACCCCCCCCG
TCCCCCCCCTCCCCCCTCCCTTCCTCCTATCCAAACCCAGACGTTGCTTC
TCGTCTTGAAGCTTTTTTCGACAGGGTTGGAGTTGGCGCTTGTGTCGGAC
GCCGTGTTCGTCAAGGCACTCGAACTTGTCGCCGGCCTCTTGCCACTGGC
ATCCCCCCCCCCACCGCCTACTGCCGACGCCGCGGCTGCCGCTGTCGCCG
GCGGTGACAAGTCGAAGCCACAGCCGTCGGCGCTGGGAAAAGGCGCCGTT
ACCGCTCTCCTGCCGCGCTCGGCGCTGGAGGATGTCGTGAACCAAGCGGC
GGCTCGGGCGGCCCGGCCGCCCCGGCGGCCGCTGTCCGAGGCCGAGGAGT
TGCGAGCCAAGGAGGCGTTCGCAAAGGTTTTCGCCAAGTCGCCCCCCGGG
TGGGCCAACAAGGTTTCCGAGTACCGGGCAAAGCTCGCAGAGAAGTCAAA
GAAGGGCGGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7573:6177..7187-

>mRNA_E_fasciculatus_S2_contig7573.15737.1 ID=mRNA_E_fasciculatus_S2_contig7573.15737.1|Name=mRNA_E_fasciculatus_S2_contig7573.15737.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=783bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7573:6177..7187- (Ectocarpus fasciculatus EfasUO2)
GCCGAGACCGCCGCAGAGATCGAAGAGGACGCGACCGCCGCTGCCGGCCA
GGACTGGCGGGGGTGGTACAGCGATGTCCCCGCCGTCCGGCGGCTGGTCT
GCACGATGCTGTGCCGCGCGATGGTGAGGGGGAGCGACGAGGCCGCCGCG
GTGCTGATGCCGGCGGCAAAGGCGGCGGTTAAGAGAATGGCGGACCAGCG
GTGGCTTTGGGCGAGCCTGGGCGAGCTGGTGCAGAGGAGCGCGGACGCAT
CGGCGGCGGCGGCGGCAGCGCCGGTGAAAGCGGGCGGAGGCGTCGTCGCC
GGCGTAGCCGGGAAGAAAGGCGGGAAAGAGAAAGGGGCGGTGCCGCGGGT
TCTGAAGCCGGAGACGTTGCTTCTCGTCTTGAAGCTTTTTTCGACAGGGT
TGGAGTTGGCGCTTGTGTCGGACGCCGTGTTCGTCAAGGCACTCGAACTT
GTCGCCGGCCTCTTGCCACTGGCATCCCCCCCCCCACCGCCTACTGCCGA
CGCCGCGGCTGCCGCTGTCGCCGGCGGTGACAAGTCGAAGCCACAGCCGT
CGGCGCTGGGAAAAGGCGCCGTTACCGCTCTCCTGCCGCGCTCGGCGCTG
GAGGATGTCGTGAACCAAGCGGCGGCTCGGGCGGCCCGGCCGCCCCGGCG
GCCGCTGTCCGAGGCCGAGGAGTTGCGAGCCAAGGAGGCGTTCGCAAAGG
TTTTCGCCAAGTCGCCCCCCGGGTGGGCCAACAAGGTTTCCGAGTACCGG
GCAAAGCTCGCAGAGAAGTCAAAGAAGGGCGGG
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