mRNA_E_fasciculatus_S2_contig7572.15735.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7572.15735.1
Unique NamemRNA_E_fasciculatus_S2_contig7572.15735.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7572.15735.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVA0_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 5.210e-44
Identity = 75/86 (87.21%), Postives = 80/86 (93.02%), Query Frame = 2 
Query:    2 EDEKYLYEDTLDWDENRLQACLAGGVAIGVLVPIAGLLHLGIFRLREALYGRVREKDIATLKRGHSLDTEDASRHSLRVAASREPL 259
            EDEKYLYEDTLDWDENRLQACL+GGVA+GVLVPIAGLLHLG+FRLREALY RVR+K+IATLKR HSL TE ASRHSLRVAAS  PL
Sbjct:  186 EDEKYLYEDTLDWDENRLQACLSGGVAVGVLVPIAGLLHLGVFRLREALYRRVRDKEIATLKREHSLATEGASRHSLRVAASSVPL 271
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BLAST of mRNA_E_fasciculatus_S2_contig7572.15735.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX10_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 4.140e-29
Identity = 52/58 (89.66%), Postives = 56/58 (96.55%), Query Frame = 2 
Query:    2 EDEKYLYEDTLDWDENRLQACLAGGVAIGVLVPIAGLLHLGIFRLREALYGRVREKDI 175
            EDEKYLYEDTLDW ENRLQACL+GGVA+GVLVPIAGLLHL +FRLREALYGRVR+KDI
Sbjct:  104 EDEKYLYEDTLDWGENRLQACLSGGVAVGVLVPIAGLLHLVVFRLREALYGRVRDKDI 161
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BLAST of mRNA_E_fasciculatus_S2_contig7572.15735.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G734_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 6.150e-6
Identity = 24/50 (48.00%), Postives = 36/50 (72.00%), Query Frame = 2 
Query:    2 EDEKYLYEDTLDWDENRLQACLAGGVAIGVLVPIAGLLHLGIFRLREALY 151
            +D++ +Y   LDW++N L AC+    AI V  P+ GL+HLG+FRLRE++Y
Sbjct:   84 DDDRLIYI-ILDWEDNTLGACIYAFGAILVGAPLFGLVHLGLFRLRESVY 132
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7572.15735.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI9_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 5.710e-5
Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 2 
Query:    2 EDEKYLYEDTLDWDENRLQACLAGGVAIGVLVPIAGLLHLGIFRLREALY 151
            +D++ +Y   LDW++N L AC+    AI V  P+ GL+H GIFRLRE +Y
Sbjct:  209 DDDRLIYI-ILDWEDNTLGACIYAFGAILVGAPLFGLVHFGIFRLRERVY 257
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7572.15735.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized5.210e-4487.21protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.140e-2989.66protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.150e-648.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.710e-548.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7572contigE_fasciculatus_S2_contig7572:4762..5638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size267
Hectar predicted targeting categoryother localisation
Exons2
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842418.6646948-CDS-E_fasciculatus_S2_contig7572:4761..48961696842418.6646948-CDS-E_fasciculatus_S2_contig7572:4761..4896Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7572 4762..4896 -
1696842418.6739924-CDS-E_fasciculatus_S2_contig7572:5506..56381696842418.6739924-CDS-E_fasciculatus_S2_contig7572:5506..5638Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7572 5507..5638 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7572.15735.1prot_E_fasciculatus_S2_contig7572.15735.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7572 4762..5638 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7572.15735.1

>prot_E_fasciculatus_S2_contig7572.15735.1 ID=prot_E_fasciculatus_S2_contig7572.15735.1|Name=mRNA_E_fasciculatus_S2_contig7572.15735.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=89bp
GRREVPLRGHTRLGREQAAGLPGGRRRHRGPRADCRTATPGDLQAARSTL
RKGSRERHRYPETRTFVGHGGRFSPFAAGGSKQRTALSR
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mRNA from alignment at E_fasciculatus_S2_contig7572:4762..5638-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7572.15735.1 ID=mRNA_E_fasciculatus_S2_contig7572.15735.1|Name=mRNA_E_fasciculatus_S2_contig7572.15735.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=877bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7572:4762..5638- (Ectocarpus fasciculatus EfasUO2)
GGAAGACGAGAAGTACCTCTACGAGGACACACTCGACTGGGACGAGAACA
GGCTGCAGGCCTGCCTGGCGGGAGGCGTCGCCATAGGGGTCCTCGTGCCG
ATTGCCGGACTGCTACACCTGGGGATCTTCAGGTGTGGGACCGGCTTTAG
CTCTTACTGCATGTGTAGGAGGTGGTGTCCGATGCTTCTTTTATTGCCGG
TCTCCGTCCAGACATACGTGCGGCAGGTGCTGCTGTCATCACGTAGGAGA
CGGGGGTGTCCGTTTCTTGTTGCCACTCTCCGTCCAGACACACACGATGC
AGGTGGGCATCTCGCGTTCCGTGCGTCGCGTCCCCTTGTAGGTGCACAAG
CATCATTGATGCATGTTACGCGGGGTAATTCCGCCAGCTTCGAGAACGCC
GCCTTTTACTACGAACATGAACCCCCAGCTTTCAGAAGAATCAAAATGTG
CTAGTAGGAAGCGTTCTCGATCACTCTTCTCTCTTCATTTCTGTCTCTCT
TGTTGCGCGGGCAGTGTGAGATCGTATACCAGGCCGATACCTGCTGATGA
GGTGAACCCACGTACAAAAGAATCATGTCATATTTCCTCCGTGCATGACG
TGCGCGTGCCTCTCGCCACTCTCATTGATTTGCCGATCATCGAACTTGCC
TCAACATTTAGCGTCCGTGCAGATGCACACATCCATTGATGCACACCGCC
GATGGGAAAACCCGTGTGCCTCGTACAATACAACACGCGCAGGCTGCGAG
AAGCACTCTACGGAAGGGTTCGAGAGAAAGACATCGCTACCCTGAAACGA
GGACATTCGTTGGACACGGAGGACGCTTCTCGCCATTCGCTGCGGGTGGC
AGCAAGCAGAGAACCGCTCTGAGTAGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7572:4762..5638-

>mRNA_E_fasciculatus_S2_contig7572.15735.1 ID=mRNA_E_fasciculatus_S2_contig7572.15735.1|Name=mRNA_E_fasciculatus_S2_contig7572.15735.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=267bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7572:4762..5638- (Ectocarpus fasciculatus EfasUO2)
GGAAGACGAGAAGTACCTCTACGAGGACACACTCGACTGGGACGAGAACA
GGCTGCAGGCCTGCCTGGCGGGAGGCGTCGCCATAGGGGTCCTCGTGCCG
ATTGCCGGACTGCTACACCTGGGGATCTTCAGGCTGCGAGAAGCACTCTA
CGGAAGGGTTCGAGAGAAAGACATCGCTACCCTGAAACGAGGACATTCGT
TGGACACGGAGGACGCTTCTCGCCATTCGCTGCGGGTGGCAGCAAGCAGA
GAACCGCTCTGAGTAGA
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