mRNA_E_fasciculatus_S2_contig7570.15733.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig7570.15733.1
Unique Name	mRNA_E_fasciculatus_S2_contig7570.15733.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig7570.15733.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q5_ECTSI)

HSP 1 Score: 348 bits (892), Expect = 4.540e-105
Identity = 230/309 (74.43%), Postives = 232/309 (75.08%), Query Frame = 1

Query:   40 NEERHQIEEALADGQEGLLALREALERTVDAARGLLERAEAVAAXXXXXXXXTLEAELRCLERRAPHSRRQASSTAAHQRRHSASPPRLPLPAGRGLRSAVDPSSSWP--------GLRVSSVGGEDIRYSGSRRLGAVRGAGGARHGQGDLDVGSDGGDRGAGATGVEAEAAAHEAATEMEEALFDVEMFVLRQGIAMAADARRREAAPQAESSRQEVSAAVEAEAATE------RAREARWEAERSSLEARLARLEEEXXXXXREADEQGAEVEALKTQRENLVRRVASAEAEAALARAVAERSSAS 924
            +EER QIEEA ADGQEGLLALREAL RT DAARGLLERAEAV A        TLEAELRCLERRAPHSRR+A STAAH RR SASPP LPLPAGRGLRSAVDPS SWP        GLRVSSVGGED RYSGSRRL AVRGAGGARHGQGDLDVGSDGG RGA                EMEEAL DVE FVLRQGIA A D RRREAA     SRQEVSAA E            RAREARWEAERSSLEARLA LEE      READEQ AEVEALK QRENLVRRVASAEAEAALARAVAERSSAS
Sbjct: 3436 SEERRQIEEAFADGQEGLLALREALGRTGDAARGLLERAEAVTADAEAGEVETLEAELRCLERRAPHSRRRAPSTAAHHRRRSASPPGLPLPAGRGLRSAVDPSFSWPQPRSPSTDGLRVSSVGGEDFRYSGSRRLWAVRGAGGARHGQGDLDVGSDGGGRGAXXXXXXXXXXXXXXXAEMEEALLDVETFVLRQGIARAVDVRRREAAE----SRQEVSAAAEEXXXXXXXXXXXRAREARWEAERSSLEARLANLEEXGASVRREADEQAAEVEALKIQRENLVRRVASAEAEAALARAVAERSSAS 3740

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig7570.15733.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP43_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.050e-18
Identity = 71/100 (71.00%), Postives = 76/100 (76.00%), Query Frame = 1

Query:  553 EMEEALFDVEMFVLRQGIAMAADARRREAAPQAESSRQEVSAAVEAEA----ATERAREARWEAERSSLEARLARLEEEXXXXXREADEQGAEVEALKTQ 840
            ++EEA+ DVE F+LRQGIA AADAR REAAPQAES RQ+VSA          ATERA  ARWEAERSSLEARLA LEEE     READEQ AEVEALKTQ
Sbjct:    9 QVEEAILDVETFLLRQGIARAADARHREAAPQAES-RQKVSAEXXXXXXXXXATERA--ARWEAERSSLEARLASLEEEGASVRREADEQAAEVEALKTQ 105

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig7570.15733.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig7570.15733.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
Uncharacterized	4.540e-105	74.43	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	1.050e-18	71.00	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig7570	contig	E_fasciculatus_S2_contig7570:2390..5725 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Stop	0
Start	0
Model size	1010
Hectar predicted targeting category	other localisation
Exons	6
Cds size	1008

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig7570.15733.1	prot_E_fasciculatus_S2_contig7570.15733.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig7570 2390..5724 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842418.518461-CDS-E_fasciculatus_S2_contig7570:2389..2452	1696842418.518461-CDS-E_fasciculatus_S2_contig7570:2389..2452	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig7570 2390..2452 +
1696842418.532264-CDS-E_fasciculatus_S2_contig7570:2831..2957	1696842418.532264-CDS-E_fasciculatus_S2_contig7570:2831..2957	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig7570 2832..2957 +
1696842418.543651-CDS-E_fasciculatus_S2_contig7570:3451..3817	1696842418.543651-CDS-E_fasciculatus_S2_contig7570:3451..3817	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig7570 3452..3817 +
1696842418.5543053-CDS-E_fasciculatus_S2_contig7570:4226..4382	1696842418.5543053-CDS-E_fasciculatus_S2_contig7570:4226..4382	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig7570 4227..4382 +
1696842418.5655098-CDS-E_fasciculatus_S2_contig7570:5257..5386	1696842418.5655098-CDS-E_fasciculatus_S2_contig7570:5257..5386	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig7570 5258..5386 +
1696842418.5764947-CDS-E_fasciculatus_S2_contig7570:5556..5724	1696842418.5764947-CDS-E_fasciculatus_S2_contig7570:5556..5724	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig7570 5557..5724 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig7570:2390..5725+
coding sequence from alignment at E_fasciculatus_S2_contig7570:2390..5725+

protein sequence of mRNA_E_fasciculatus_S2_contig7570.15733.1

>prot_E_fasciculatus_S2_contig7570.15733.1 ID=prot_E_fasciculatus_S2_contig7570.15733.1|Name=mRNA_E_fasciculatus_S2_contig7570.15733.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=336bp
AELEASERKVFAVNEERHQIEEALADGQEGLLALREALERTVDAARGLLE
RAEAVAADAEAAEVETLEAELRCLERRAPHSRRQASSTAAHQRRHSASPP
RLPLPAGRGLRSAVDPSSSWPGLRVSSVGGEDIRYSGSRRLGAVRGAGGA
RHGQGDLDVGSDGGDRGAGATGVEAEAAAHEAATEMEEALFDVEMFVLRQ
GIAMAADARRREAAPQAESSRQEVSAAVEAEAATERAREARWEAERSSLE
ARLARLEEEAASVRREADEQGAEVEALKTQRENLVRRVASAEAEAALARA
VAERSSASSSSSSSSAPPSQQQQQQQQQGSGGEDSS

mRNA from alignment at E_fasciculatus_S2_contig7570:2390..5725+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig7570.15733.1 ID=mRNA_E_fasciculatus_S2_contig7570.15733.1|Name=mRNA_E_fasciculatus_S2_contig7570.15733.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3336bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7570:2390..5725+ (Ectocarpus fasciculatus EfasUO2)
GCAGAGCTGGAAGCTTCCGAGAGAAAGGTTTTTGCCGTGAACGAGGAGAG
GCACCAGATCGAGGTAAGGCATTGCTGTTTTGCTGCTGTTGCTGTGCTGT
TGCTGTGCTGCTGCTGCTGCTGCTGCTACTGCTGCTGCTGCTGTTGCTGT
GCTGTTGCTGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTGCTGCT
GCTGCTGCTGCTGCTGTGTGGCGGCCGTTCGTTGTGCCTGCTGTGGCTGC
GTGTGTGTTGTGTGGTTCTTGTCACCACCGTCGAGCGAGGTCCAACGTGC
TTCGTTTTTCATTCTGTCTGCCCATTAGCCGCATCGACCATTCGTCATTC
GTCGGTACGAAACGGTTCAAGATCACATCACTCACGACTGTCAGACCCGC
TCCCGCGGTGCCCTTTACAACAACAATGACAACCTCGTGCAGGAGGCGTT
AGCCGATGGGCAGGAAGGGTTGCTGGCTCTACGAGAGGCCCTTGAGCGTA
CCGTCGACGCAGCACGGGGTCTGCTAGAGAGAGCAGAGGCGGTTGCGGCG
GATGCTGAAGCCGCAGAGGTGAGGTTGACCACGCTGCACCTATGAATCAC
GATCAAGCGCTCTATGCCGCTGTCAGCCGGAGTTTTTTTTTTTGTCAAGG
AAGGTACAGTGGAAGCATGGCCGGACTATGCCACTAGTGAATTCCTCGTG
CCTCTCCCTCTTCACGTAAGCTGCACGCACGCACGGTGCTCCATGGATCG
ACCTTGCACACGAAACGCCCGCGCAACCAAAAGGGAGTTGGCCAGCTAGC
TACCTAACTAGAGAAGAGACCATCCGCAACCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCAGACCCCCCCACGCCCCGCCC
ACGCCGGCCGGNNNNNNNNNNTTTTTTTTTTTTTTAAAAAAAAAGACGCA
ATACAATTTGGGGGGGTGAGGGGATTCAAGAGGTGTCCTCCCCCCTTCAA
AAAAACCACCCCCCCCCCCCCCCCCCCCCCCCCCCCGACCGCCGCCTAAA
AACACGCTGCAGGTGGAAACCCTCGAGGCCGAGCTTCGATGCCTGGAACG
CCGCGCTCCTCACAGCCGGAGACAAGCATCATCGACAGCTGCACACCAGC
GCCGCCACTCCGCTTCCCCCCCCCGCCTCCCGCTGCCTGCTGGACGGGGA
CTGCGCTCCGCGGTAGACCCCAGTTCCTCGTGGCCGGGGCTCCGTGTTTC
GTCGGTGGGTGGCGAAGATATCCGATACAGCGGAAGTCGGCGCTTGGGGG
CTGTGCGCGGGGCGGGTGGTGCGCGACATGGGCAGGGTGACCTGGATGTG
GGTTCGGATGGAGGAGACCGCGGGGCGGGGGCGACGGGGGTTGAGGCGGA
GGCGGCGGCGCACGAGGCCGCAACGGAGGTGAGGCGCGGCGAGCGTGGGG
GGGTACACGTGGGAGAGGGGTGGGGGTGGAGGGCAGGAGCGGGAGGGGTG
GAGGGAGAAAGAGGGAGAGGGATATATACATATACATATACATATACATA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGATACAGACAGAGACGGAGACAGAGATACAAAGACGAAGACGCTAA
GGGACCAGTCCCCCCTTCGACAACATTGTGTCGGAAGGACAGAACCTTTT
CTCTTCCTGCAACAAATAGGTGAGAAAATCAGCCGTTTTTTTTTCTTTGT
TCCTCTCGGCGTGATGCCTTCTTTTTTTGACGAGCGCGTCTCTCTCGTAT
GCCTCCGTTCATGTGAACATCCACCCAATCCATCCAGATGGAAGAAGCGC
TCTTCGACGTGGAGATGTTTGTCCTGCGACAGGGGATCGCTATGGCGGCG
GACGCGAGACGCCGGGAGGCTGCTCCCCAGGCGGAGTCGTCCCGGCAAGA
GGTTTCCGCTGCGGTGGAGGCGGAGGCAGCGACCGAACGAGCGGTGAGAT
GCGGCGAGATAAAGATAAATATACGTTCCGTCCCGCGTGGCTTCACGGGA
TGGGATTCGATTGGCTTGTTGCCGTTGCGTTGGGTGCGAGAACACCCCCA
GGAGTAGTGCAGCGTAGAATGAACTCTACTCCCTGCTGGATGGAAGCCAG
GGTCCCCTTGGTGATATGTGTAAACTGACTGCATTCGTATTTATCCAACC
ACAATAAACCCGTCGGTGACCTCGGCTGGTGTGTCCAAACATGCGGAAAG
GTGTACGAAAGTGTTGTCACGTCCAGTATCAACGTCACGACTAATAACAC
CATTCAAATCTCAAGGAGTTGTGAGGGGGGCGGGGGCGGGGGGGATTCTC
GCTCTCGTTCTGTTTCATTTTGTGTTTAGTGTTGGCGTGCGCGGGGCCTT
GCCTATACAAGTGGCTTTTCTGTTTTGGCACCAGTGTGTATATCGAGAAA
GTCCTGGGTCGTAACTGTCTCTGTTCAGTCATCGTCCAAAGAAACGATAT
TTGGGGTGGGGAAGTATTGCACCTCTTTTTACGAATTTCGTGACACGTCT
CCGCACGGTGCGGAGGAACTTCGGAACGCACATGCGCCGATCTTGGCGAA
GGTGTTTTGCGGCGGAATTATTGGCCCTCAAACAGTTCACGGGGGAGGGA
GGGGGCGCGTGTTTGTGCCAGTCCACCACGATCGATGTGTGTACATGTAT
GACATCCACGATGGACCATCTAAAGAAACTATTGCGTGTCATGTAAGTAG
TGTGTGGTACTGACGTGGCCCACGAAGGAGTAAGGTACGCCCTTCGCAGA
TTCAATTGAATACCGCCCCGGCCTTTTGAACCATCGTTGGTTTTGTTGTT
TCTTTTGCGCTTGCTCAGCGGGAGGCCCGATGGGAAGCTGAGAGGTCGTC
GCTAGAGGCGCGCTTGGCTCGTCTGGAAGAAGAGGCCGCAAGCGTGAGGC
GAGAAGCAGACGAGCAGGGGGCAGAAGTGGAGGCTCTCAAGACTCAGGTA
ACGCTGTCTCCTATCAGTCTCTCCCTCTGTGTACGCACGTACTCAGCGAA
GCGAGGGATTTCTACCGCGCTTGGTGTTGTAAGTACGCAATACGCCGTAG
CTTGTTTTAGTGTTTAATTTGCTCCCCTTCCTTACGTGCTCCTCTTCGCG
CGGCATTGACGAAGCAGCGCGAGAACCTCGTCCGGCGCGTGGCGTCGGCG
GAAGCGGAAGCGGCACTGGCCCGCGCGGTGGCGGAGCGCTCTTCCGCCTC
CTCCTCCTCCTCCTCTTCCTCCGCCCCGCCCTCGCAGCAACAGCAGCAGC
AACAGCAGCAAGGAAGCGGCGGCGAGGATTCTAGCG

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7570:2390..5725+

>mRNA_E_fasciculatus_S2_contig7570.15733.1 ID=mRNA_E_fasciculatus_S2_contig7570.15733.1|Name=mRNA_E_fasciculatus_S2_contig7570.15733.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1008bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7570:2390..5725+ (Ectocarpus fasciculatus EfasUO2)
GCAGAGCTGGAAGCTTCCGAGAGAAAGGTTTTTGCCGTGAACGAGGAGAG
GCACCAGATCGAGGAGGCGTTAGCCGATGGGCAGGAAGGGTTGCTGGCTC
TACGAGAGGCCCTTGAGCGTACCGTCGACGCAGCACGGGGTCTGCTAGAG
AGAGCAGAGGCGGTTGCGGCGGATGCTGAAGCCGCAGAGGTGGAAACCCT
CGAGGCCGAGCTTCGATGCCTGGAACGCCGCGCTCCTCACAGCCGGAGAC
AAGCATCATCGACAGCTGCACACCAGCGCCGCCACTCCGCTTCCCCCCCC
CGCCTCCCGCTGCCTGCTGGACGGGGACTGCGCTCCGCGGTAGACCCCAG
TTCCTCGTGGCCGGGGCTCCGTGTTTCGTCGGTGGGTGGCGAAGATATCC
GATACAGCGGAAGTCGGCGCTTGGGGGCTGTGCGCGGGGCGGGTGGTGCG
CGACATGGGCAGGGTGACCTGGATGTGGGTTCGGATGGAGGAGACCGCGG
GGCGGGGGCGACGGGGGTTGAGGCGGAGGCGGCGGCGCACGAGGCCGCAA
CGGAGATGGAAGAAGCGCTCTTCGACGTGGAGATGTTTGTCCTGCGACAG
GGGATCGCTATGGCGGCGGACGCGAGACGCCGGGAGGCTGCTCCCCAGGC
GGAGTCGTCCCGGCAAGAGGTTTCCGCTGCGGTGGAGGCGGAGGCAGCGA
CCGAACGAGCGCGGGAGGCCCGATGGGAAGCTGAGAGGTCGTCGCTAGAG
GCGCGCTTGGCTCGTCTGGAAGAAGAGGCCGCAAGCGTGAGGCGAGAAGC
AGACGAGCAGGGGGCAGAAGTGGAGGCTCTCAAGACTCAGCGCGAGAACC
TCGTCCGGCGCGTGGCGTCGGCGGAAGCGGAAGCGGCACTGGCCCGCGCG
GTGGCGGAGCGCTCTTCCGCCTCCTCCTCCTCCTCCTCTTCCTCCGCCCC
GCCCTCGCAGCAACAGCAGCAGCAACAGCAGCAAGGAAGCGGCGGCGAGG
ATTCTAGC