mRNA_E_fasciculatus_S2_contig7566.15727.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7566.15727.1
Unique NamemRNA_E_fasciculatus_S2_contig7566.15727.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7566.15727.1 vs.
Match: Exostoses ((Multiple) 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G197_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 3.940e-52
Identity = 78/94 (82.98%), Postives = 88/94 (93.62%), Query Frame = 1 
Query:    1 LQVMSAGAIPVIVVRDWVKPFPENVDWSSFSFTFSPDEVPRIPGVLRSLSLAEIEKMQRKAIEAYWKIYGGKTNYSWISRVTIKILNERLGYHR 282
            L+ +SAGAIPVIVVRDWVKPFPE VDWSSFSFTFSPDEVP++  VLRSLS+AE E+MQR+AIEAYWKIYGG TNYSWISR+TI+IL+ERLGYHR
Sbjct:   19 LKALSAGAIPVIVVRDWVKPFPEKVDWSSFSFTFSPDEVPQMIEVLRSLSMAETEEMQRRAIEAYWKIYGGTTNYSWISRITIEILSERLGYHR 112
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BLAST of mRNA_E_fasciculatus_S2_contig7566.15727.1 vs.
Match: GT47 (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9T2_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 5.690e-29
Identity = 55/93 (59.14%), Postives = 72/93 (77.42%), Query Frame = 1 
Query:    4 QVMSAGAIPVIVVRDWVKPFPENVDWSSFSFTFSPDEV-PRIPGVLRSLSLAEIEKMQRKAIEAYWKIYGGKTNYSWISRVTIKILNERLGYH 279
            +VMSAGAIPV VVRDW+KPF E +DW SFSF FSPD+V P +   LR++  A++ +MQRK++ AYWKI+GG TNYS I+   I +L +R+GYH
Sbjct:  435 EVMSAGAIPVFVVRDWIKPFQEQIDWPSFSFVFSPDDVGPIMMETLRAVQPAQLLEMQRKSLRAYWKIFGGVTNYSVIASNAIDMLVQRIGYH 527
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BLAST of mRNA_E_fasciculatus_S2_contig7566.15727.1 vs.
Match: GT47 (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRU9_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.420e-22
Identity = 49/94 (52.13%), Postives = 69/94 (73.40%), Query Frame = 1 
Query:    4 QVMSAGAIPVIVVRDWVKPFPENVDWSSFSFTFSPDEV-PRIPGVLRSLSLAEIEKMQRKAIEAYWKIYGGKTNYSWISRVTIKILNERLGYHR 282
            +VMSAGAIPV V RD V+PFPE VDW + SF+F P+EV P +   LRS++ AE+  MQRK+++A+++I+G +  Y  I+RV +  L  R+GYHR
Sbjct:  443 EVMSAGAIPVFVSRDMVRPFPERVDWPTLSFSFPPEEVGPAMMDTLRSVTPAELLGMQRKSVQAFYEIFGEEPGYDRIARVVVDELVLRVGYHR 536
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BLAST of mRNA_E_fasciculatus_S2_contig7566.15727.1 vs.
Match: Exostosin (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJY5_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 9.210e-14
Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    4 QVMSAGAIPVIVVRDWVKPFPENVDWSSFSFTFSPDEVPRIPGVLRSLSLAEIEKMQRKAIEAYWKIYG-GKTNYSWISRVTIKILNERLGY 276
            + +SAGAIPV + +D+VKPFP  + WS FSF+F P+E PRI   LR++   ++ +MQ  A+E +   +G G  N   +    + IL +RL +
Sbjct:   21 EALSAGAIPVFIHQDFVKPFPGQIPWSEFSFSFPPEEAPRILETLRAVPDKKLAQMQVTALEVFDTYFGPGMGN---MLHTVLDILEDRLHF 109
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BLAST of mRNA_E_fasciculatus_S2_contig7566.15727.1 vs.
Match: Glycosyltransferase, (family GT47 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY4_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.010e-13
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    4 QVMSAGAIPVIVVRDWVKPFPENVDWSSFSFTFSPDEV-PRIPGVLRSLSLAEIEKMQ 174
            +VMSAGAIPV VVRDW+KPF E +DW SFSF FSPD+V P +   LR++  A + +MQ
Sbjct:  130 EVMSAGAIPVFVVRDWIKPFQEQIDWPSFSFVFSPDDVGPIMMETLRAVEPARLLEMQ 187
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BLAST of mRNA_E_fasciculatus_S2_contig7566.15727.1 vs.
Match: Glycosyltransferase, (family GT47 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNT2_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 4.740e-13
Identity = 39/95 (41.05%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:    4 QVMSAGAIPVIVVRDWVKPFPENVDWSSFSFTFSPDEVPRIPGVLRSLSLAEIEKMQRKAIEAYWKIYG-GKTNYSWISRVTIKILNERLGYHRA 285
            + +SAGA+PV + +D+VKPFP  + WS FSF+F P+EVPR+   LR++   E+ +MQ  A+E +   +G G  N   +    + IL +RL Y R+
Sbjct:  497 EALSAGALPVFIHQDFVKPFPGKIPWSDFSFSFPPEEVPRMLKTLRAVPDRELAQMQATALEVFDTYFGPGMDN---MLHTVLDILEDRL-YFRS 587
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BLAST of mRNA_E_fasciculatus_S2_contig7566.15727.1 vs.
Match: Glycosyltransferase, (family GT47 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN9_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 4.180e-12
Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    4 QVMSAGAIPVIVVRDWVKPFPENVDWSSFSFTFSPDEVPRIPGVLRSLSLAEIEKMQRKAIEAYWKIYG-GKTNYSWISRVTIKILNERLGY 276
            + +SAGA+PV + +D+VKPFP  V WS FSF+F P+E PRI   LR++   ++ +MQ  A+E +   +G G  N   +    + IL +RL +
Sbjct:  464 EALSAGALPVFIHQDFVKPFPGQVPWSEFSFSFPPEEAPRILETLRAVPDKKLAQMQVTALEVFDTYFGPGMGN---MLHTVLDILEDRLHF 552
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BLAST of mRNA_E_fasciculatus_S2_contig7566.15727.1 vs.
Match: exostosin (family protein n=1 Tax=Synechococcus elongatus TaxID=32046 RepID=UPI0012AA7731)

HSP 1 Score: 62.0 bits (149), Expect = 4.060e-9
Identity = 30/93 (32.26%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:    1 LQVMSAGAIPVIVVRDWVKPFPENVDWSSFSFTFSPDEVPRIPGVLRSLSLAEIEKMQRKAIEAYWKIYGGKTNYSWISRVT--IKILNERLG 273
            L++++AGA+PV++  DWV PF E +DWS FS   + ++   +P +L+++S  + + MQ+++ + Y + +     YS   +V   + IL++R G
Sbjct:  229 LEIIAAGAVPVVLADDWVLPFSELLDWSEFSLPVAEEQCLDLPQILQAISAEQWQSMQQRSQQVYQQYF-----YSLARQVNTLLLILDQRSG 316
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BLAST of mRNA_E_fasciculatus_S2_contig7566.15727.1 vs.
Match: Uncharacterized (protein n=1 Tax=Synechococcus elongatus PCC 11801 TaxID=2219813 RepID=A0A3G6WWM9_SYNEL)

HSP 1 Score: 61.6 bits (148), Expect = 5.550e-9
Identity = 32/93 (34.41%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:    1 LQVMSAGAIPVIVVRDWVKPFPENVDWSSFSFTFSPDEVPRIPGVLRSLSLAEIEKMQRKAIEAYWKIYGGKTNYSWISRVT--IKILNERLG 273
            L+VM+AGA+PV++  DWV PF E +DWS FS   + ++   +P  L+ +S  + + MQ+++ + Y + +     YS   +V   + IL++R G
Sbjct:  229 LEVMAAGAVPVVLADDWVLPFSELLDWSKFSLQVAEEQCLELPQKLQVISTEQWQAMQQRSQQVYQQYF-----YSLAQQVNTLLLILDQRSG 316
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BLAST of mRNA_E_fasciculatus_S2_contig7566.15727.1 vs.
Match: exostosin-1c-like (isoform X2 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=UPI000D16496E)

HSP 1 Score: 53.9 bits (128), Expect = 2.430e-6
Identity = 31/90 (34.44%), Postives = 48/90 (53.33%), Query Frame = 1 
Query:    1 LQVMSAGAIPVIVVRDWVKPFPENVDWSSFSFTFSPDEVPRIPGVLRSLSLAEIEKMQRKAIEAYWKIYGGKTNYSWISRVTIKILNERL 270
            L+V+SAGAIPV+V  ++VKPF   + W      F   E+ RI   LR+LS  E+E  QR   + +  +     + S + +  ++ L ER 
Sbjct:  203 LEVLSAGAIPVLVADNYVKPFETLIKWQRCLLQFPTSEIHRIVPTLRALSKKEVEMRQRYCQQIFQSVL---KDDSTLMQSVMRSLRERF 289
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7566.15727.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
Exostoses3.940e-5282.98(Multiple) 2 n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
GT475.690e-2959.14protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
GT471.420e-2252.13protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Exostosin9.210e-1440.22domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Glycosyltransferase,1.010e-1360.34family GT47 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
Glycosyltransferase,4.740e-1341.05family GT47 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
Glycosyltransferase,4.180e-1240.22family GT47 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
exostosin4.060e-932.26family protein n=1 Tax=Synechococcus elongatus Tax... [more]
Uncharacterized5.550e-934.41protein n=1 Tax=Synechococcus elongatus PCC 11801 ... [more]
exostosin-1c-like2.430e-634.44isoform X2 n=1 Tax=Physcomitrium patens TaxID=3218... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7566contigE_fasciculatus_S2_contig7566:1585..2739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score100.9
Seed ortholog evalue3.3e-19
Seed eggNOG ortholog2880.D7FYQ6
Preferred nameEXTL1
Model size288
KEGG koko:K02366,ko:K02368,ko:K21988
KEGG TC1.A.17.4
KEGG ReactionR05935,R05936,R10138,R10139
KEGG Pathwayko00534,ko01100,map00534,map01100
KEGG ModuleM00059
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0000271,GO:0000902,GO:0000904,GO:0001501,GO:0001503,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005975,GO:0005976,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006040,GO:0006044,GO:0006082,GO:0006790,GO:0006807,GO:0006810,GO:0006897,GO:0006928,GO:0006935,GO:0006950,GO:0006986,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007369,GO:0007399,GO:0007409,GO:0007411,GO:0007417,GO:0007420,GO:0007492,GO:0007498,GO:0008150,GO:0008152,GO:0008194,GO:0008354,GO:0008375,GO:0008589,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010646,GO:0010647,GO:0012505,GO:0015012,GO:0015014,GO:0015020,GO:0016020,GO:0016021,GO:0016043,GO:0016051,GO:0016192,GO:0016477,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0019899,GO:0019953,GO:0021537,GO:0021772,GO:0021988,GO:0022008,GO:0022412,GO:0022414,GO:0023051,GO:0023052,GO:0023056,GO:0030030,GO:0030111,GO:0030154,GO:0030166,GO:0030176,GO:0030177,GO:0030182,GO:0030201,GO:0030202,GO:0030203,GO:0030210,GO:0030900,GO:0030968,GO:0031090,GO:0031175,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032990,GO:0033554,GO:0033692,GO:0034620,GO:0034637,GO:0034645,GO:0034976,GO:0035295,GO:0035966,GO:0035967,GO:0036465,GO:0036498,GO:0040011,GO:0042175,GO:0042221,GO:0042328,GO:0042330,GO:0042802,GO:0042803,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045880,GO:0046982,GO:0046983,GO:0048311,GO:0048312,GO:0048468,GO:0048488,GO:0048513,GO:0048518,GO:0048522,GO:0048565,GO:0048583,GO:0048584,GO:0048598,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048706,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050508,GO:0050509,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051646,GO:0051649,GO:0051674,GO:0051704,GO:0051716,GO:0055123,GO:0060322,GO:0060465,GO:0060828,GO:0061564,GO:0065007,GO:0070887,GO:0071310,GO:0071704,GO:0071840,GO:0072498,GO:0090092,GO:0090097,GO:0090098,GO:0090100,GO:0090263,GO:0097485,GO:0098588,GO:0098657,GO:0098791,GO:0098827,GO:0099003,GO:0099504,GO:0120036,GO:0120039,GO:1901071,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903510
Exons2
EggNOG free text desc.macromolecule glycosylation
EggNOG OGsKOG1021@1,KOG1021@2759
Ec32 ortholog descriptionExostosin-like
Ec32 orthologEc-00_005510.1
EC2.4.1.224,2.4.1.225
Cds size279
COG Functional cat.S
CAZyGT47,GT64
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842417.8175945-CDS-E_fasciculatus_S2_contig7566:1584..16981696842417.8175945-CDS-E_fasciculatus_S2_contig7566:1584..1698Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7566 1585..1698 -
1696842417.8330984-CDS-E_fasciculatus_S2_contig7566:2565..27301696842417.8330984-CDS-E_fasciculatus_S2_contig7566:2565..2730Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7566 2566..2730 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842417.8442087-UTR-E_fasciculatus_S2_contig7566:2730..27391696842417.8442087-UTR-E_fasciculatus_S2_contig7566:2730..2739Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7566 2731..2739 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7566.15727.1prot_E_fasciculatus_S2_contig7566.15727.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7566 1585..2730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7566.15727.1

>prot_E_fasciculatus_S2_contig7566.15727.1 ID=prot_E_fasciculatus_S2_contig7566.15727.1|Name=mRNA_E_fasciculatus_S2_contig7566.15727.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=93bp
MSAGAIPVIVVRDWVKPFPENVDWSSFSFTFSPDEVPRIPGVLRSLSLAE
IEKMQRKAIEAYWKIYGGKTNYSWISRVTIKILNERLGYHRA*
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mRNA from alignment at E_fasciculatus_S2_contig7566:1585..2739-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7566.15727.1 ID=mRNA_E_fasciculatus_S2_contig7566.15727.1|Name=mRNA_E_fasciculatus_S2_contig7566.15727.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1155bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7566:1585..2739- (Ectocarpus fasciculatus EfasUO2)
CTTCAGGTTATGAGCGCTGGGGCCATACCCGTGATTGTGGTGAGGGATTG
GGTGAAGCCTTTCCCGGAGAACGTCGACTGGTCTTCCTTCTCCTTCACCT
TTAGCCCAGACGAAGTGCCTCGGATACCCGGAGTCTTGAGATCACTCTCT
CTGGCCGAGATAGAGAAAATGCAGGTGGGTTTTATGATGCTTGATACCGA
AGGGACACCTGGAGTTGTACCTGGAGTTGTAGCGTCTTCGACACGAAACC
GTTTGAAAAGTCGTTGATAGTTCTTCACAGTACGAGGTGACGACAACCTC
GGCAATCAGGTTCTATTCTGCATCCAAGATATTAGGAGATATGAAAATCG
AAAACGGCCTTCCGGTCAAGAGAGTGTGCAATGTTCGTTGGGAAATCAGT
AGAGGACATCATGGAGCAGCGACCGTTCGCATGCCCAGGTCTGCTGTTCG
GGCCGTGCTGTGTCGGAAGGATGCAGCTGCGGCGTTACGGTCCGCAAATC
CGAATTGTTTGGCCCAGATTTTGACCCGGAATTATTTGCGGACGTTTCGG
GCGGCAGCTAGCTGCAGACTCACGAAAGCACGCCCCCAGCAACAGAACTG
GGCGTGCGAACGGTCGCTGCCCCATGATATCCTCTACTGCCGCCTGCTTC
GTCGTCAAATACAGACTGGTGTATTATTGTCTTGATTAGAGAGAAGCAAT
ATGGAGGAGGTGGACTGTGTGACGTGCAGGAAAAGGCGCTTCCCGACCGC
TGGTCTGTGGGACAGTTGGAGTATTTTCTCCTCATTCCCACACTGACTGG
TCTCAAGCATCCGTGTGTGATCCCTGGGTGCTCTTGTGGTCGTTTTCGAA
ATAAGTGAAAATCACTGCGGATGTTTACGAAGCGGAATGCTTTATGTGCT
GTTGTGAGAAACCCTTCAAACAAAACTCCCCGCCGTTACAAGTACATCAA
ACGCGCAAAGAAATACGGGTCTCCTTGCTGTCTAACGTTTGCACGACCGA
TACCCACCCGCGTTTCTGCCCCCCCCCGTTGTTCTCCCCAGCGCAAAGCA
ATCGAGGCATATTGGAAAATTTACGGCGGCAAGACGAACTATTCCTGGAT
TTCTCGCGTCACCATCAAGATTCTTAACGAACGGCTAGGGTATCACAGGG
CATGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7566:1585..2739-

>mRNA_E_fasciculatus_S2_contig7566.15727.1 ID=mRNA_E_fasciculatus_S2_contig7566.15727.1|Name=mRNA_E_fasciculatus_S2_contig7566.15727.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=279bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7566:1585..2739- (Ectocarpus fasciculatus EfasUO2)
ATGAGCGCTGGGGCCATACCCGTGATTGTGGTGAGGGATTGGGTGAAGCC
TTTCCCGGAGAACGTCGACTGGTCTTCCTTCTCCTTCACCTTTAGCCCAG
ACGAAGTGCCTCGGATACCCGGAGTCTTGAGATCACTCTCTCTGGCCGAG
ATAGAGAAAATGCAGCGCAAAGCAATCGAGGCATATTGGAAAATTTACGG
CGGCAAGACGAACTATTCCTGGATTTCTCGCGTCACCATCAAGATTCTTA
ACGAACGGCTAGGGTATCACAGGGCATGA
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