mRNA_E_fasciculatus_S2_contig7560.15723.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7560.15723.1 vs.
Match: Mitochondrial (ribosomal protein L46 isoform 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Q3_ECTSI) HSP 1 Score: 575 bits (1483), Expect = 2.010e-203 Identity = 288/308 (93.51%), Postives = 296/308 (96.10%), Query Frame = 1
Query: 67 MLARRCAMLASSSARIAKLRPLAVLVAPSCREVSSSNLTKKQQIEGFTIKDRRPPRPRVAKQKRKQYLAERKAAFEAEQEKAESLGLDWGTRSALILERLPVIVEEYTDWQRDFWDIQTTQAHYGAKFPAEMGFKYDDEKSLTMEQVLEQSPVPLAARRTPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWEPGETIRQTAERTAQQLLQKTATRKGQRDDVAQLHFVGNCPAGWFWRTANGEQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYLGESMGVYLKHLI 990
M ARRC ML+SS+ R KLRPLAVL+AP+CRE+SSSNLTKKQQIEGFTIKDRRPPRPRVAKQKRKQYLAERK AFEAEQEKA SLGLDWG RSALILERLPVIVEEYTDWQRDFWD+QT QAHYGAKFPAEMGFKYDDEKSLTMEQVLEQSPVPLA RRTPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWEPGETIRQTAERTAQQLL K+ATRKGQRDDVAQLHFVGNCPAGWFWRTA+ EQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYLGESMGVYLKHLI
Sbjct: 1 MFARRCTMLSSSAVRRVKLRPLAVLLAPNCRELSSSNLTKKQQIEGFTIKDRRPPRPRVAKQKRKQYLAERKDAFEAEQEKATSLGLDWGIRSALILERLPVIVEEYTDWQRDFWDLQTKQAHYGAKFPAEMGFKYDDEKSLTMEQVLEQSPVPLAPRRTPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWEPGETIRQTAERTAQQLLLKSATRKGQRDDVAQLHFVGNCPAGWFWRTADEEQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYLGESMGVYLKHLI 308
BLAST of mRNA_E_fasciculatus_S2_contig7560.15723.1 vs.
Match: Mitochondrial (ribosomal protein l46 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRZ1_9STRA) HSP 1 Score: 123 bits (308), Expect = 1.870e-27 Identity = 84/247 (34.01%), Postives = 126/247 (51.01%), Query Frame = 1
Query: 265 YLAERKAAFEAEQEKAESLGLDWGTRSALILERLPVIVEEYTDWQRDFWDIQTTQAHYGAKFPAEMGFKYDD-EKSLTMEQVLEQSPVPLAARRTPADESNDRTTLDRALDERLVLIVK-PRSGDEWRLPESAWEPGE--------TIRQTAERTAQQLLQKTATRKGQRDDVAQLHFVGNCPAGWFWRT----ANGEQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYLGES 963
YL R A + A+ L W +A I+ER P+I++E DW+ + ++Q A +G FP E+ E + ++VL + P LA R T AD NDRTTL+RAL ERL L+++ P + W LP + E G ++R+T E T ++ L D + + N P G WR + G+ GG+ + +GDKVF R Q + G+ VV E +WVT+ E+GEYL ++
Sbjct: 102 YLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFL----------GDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGE-QTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQA 337
BLAST of mRNA_E_fasciculatus_S2_contig7560.15723.1 vs.
Match: Serine (threonine-kinase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VD62_9CHLO) HSP 1 Score: 112 bits (281), Expect = 1.910e-22 Identity = 87/261 (33.33%), Postives = 127/261 (48.66%), Query Frame = 1
Query: 346 ALILERLPVIVEEYTDWQRDFWDIQTTQAHYGAKFPAEMGFKYDDEKSLTMEQVLEQSPVPLAARRTPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWEPGETIRQTAERTAQQLLQKTATRKGQRDDVAQLHFVGNCPAGWFWRTANGEQGGQHEKFGDK--VFINRVQLICGQPTVVKRQA-AEHLWVTKHEIGEYLGESMGVYLKHLI*KFGERP---NFDVFGKDTRVSHDKVGGQITACEGTYLCGVPA 1110
A++ ERLPV+V E +W+R++++ Q A K+ E+ ++ D K M++ S P A R T AD +NDR +L R LD+RL ++V+ + G W LP+ GET+RQTAER ++ A R +FVGN PAG H GD +F +R QLI G P + +EH+WVTK E+GEYL + + + + E+ + G D R + G Q A G L A
Sbjct: 52 AVVFERLPVVVPEDPEWEREYFEWQDGLA---GKYRKELPREFTDLKDSEMKEDAGASYEP-APRVTAADHANDRRSLKRRLDQRLFMLVRQKGG--WTLPQQENAEGETMRQTAERALADAVELEAVRP---------YFVGNAPAG-------------HAPLGDAGTLFFHRCQLIQGVPALRGGSGYSEHVWVTKEELGEYLQQPDVLAVMQKMLHANEQDLIVSHPENGTDLRWGLNDAGRQQAAAAGAQLAAALA 284
BLAST of mRNA_E_fasciculatus_S2_contig7560.15723.1 vs.
Match: 39S (ribosomal protein L46, mitochondrial n=6 Tax=Canidae TaxID=9608 RepID=A0A3Q7SNB8_VULVU) HSP 1 Score: 103 bits (258), Expect = 3.010e-21 Identity = 78/238 (32.77%), Postives = 115/238 (48.32%), Query Frame = 1
Query: 316 SLGLDWGTRSALILERLPVIVEEYTDWQRD----FWDIQTTQAHYG-------------AKFPAEMGFKYDDEKSLTM----EQVLEQSPVPL--AARRTPADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWEPGETIRQTAERTAQQLLQKTATRKGQRDDVAQLHFVGNCPAGWFWRTANGEQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYL 954
S G W AL L+R P++ + T Q + F I+ ++ Y AK A++ + DDE+ + + E V EQ + AR T AD+ NDRT+L R LD LVL+VK + GD+ W LP++ W+PGET+R TAERT L + K F+GN P G + + + G KVF + L+ G + ++ H+WV K E+G+YL
Sbjct: 40 SSGSPWRLLGALCLQRPPLVSKPLTPLQEEMAALFQQIEVERSRYSDHELRALDEARRLAKKKADLNDEEDDEQDILLVQDLEDVWEQKFLQFKPGARVTEADKKNDRTSLQRKLDRNLVLLVKEKLGDQDVWMLPQAEWQPGETLRGTAERTLATLSENNLEAK----------FLGNAPCGHY-KFKFPQALRTESSLGAKVFFFKALLLTGDFSRTSKKD-HHVWVCKEELGDYL 265
BLAST of mRNA_E_fasciculatus_S2_contig7560.15723.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2E5_9STRA) HSP 1 Score: 100 bits (250), Expect = 8.860e-21 Identity = 69/210 (32.86%), Postives = 107/210 (50.95%), Query Frame = 1
Query: 376 VEEYTDWQRDFWDIQTTQAHYGAKFPAEMGFK-YDDEKSLTMEQVLEQSPVPLAARRTPADESNDRTTLDRALDERLVLIVK-PRSGDEWRLPESAWEPGE--------TIRQTAERTAQQLLQKTATRKGQRDDVAQLHFVGNCPAGWFWRT----ANGEQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYLGES 963
++E DW+ + ++Q A +G FP E+ + E + + VL + P LA R T AD NDRTTL+RAL ERL L+++ P + W LP + E G ++R T E T ++ + + + + N P G WR + G+ GG+ + +GDKVF R Q + G+ VV E +WVT+ E+GEYL ++
Sbjct: 1 MKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGHAAELDRSDDDVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRNTHEATVRRFM----------GEKFEAYVPSNAPVGVHWRVPSEPSTGKTGGE-QAYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQA 199
BLAST of mRNA_E_fasciculatus_S2_contig7560.15723.1 vs.
Match: 39S (ribosomal protein L46, mitochondrial n=8 Tax=Simiiformes TaxID=314293 RepID=F7GBZ6_CALJA) HSP 1 Score: 100 bits (250), Expect = 3.460e-20 Identity = 75/237 (31.65%), Postives = 111/237 (46.84%), Query Frame = 1
Query: 316 SLGLDWGTRSALILERLPVIVEEYTDWQRD--------------FWDIQTTQAHYGAKFPAEMGFKYD--DEKSLTMEQVLEQS------PVPLAARRTPADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWEPGETIRQTAERTAQQLLQKTATRKGQRDDVAQLHFVGNCPAGWFWRTANGEQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYL 954
S G W AL L+R P++ + +T Q + + D + + + YD DE+ + + Q LE L AR T ADE NDRT+L+R LD LVL+V+ + GDE W LP++ W+PGET+R TAERT L + K F+GN P G + + + G KVF + L+ G + ++ +H+WVTK E+ +YL
Sbjct: 39 SSGSPWRLLGALCLQRPPLVSKPFTPLQEEMASLLQQIEIERSLYSDHELRALEESKRLEKKKADLYDEEDEQDILLVQDLEDMWEQRFVQFKLGARVTEADEKNDRTSLNRKLDRNLVLLVREKLGDEDVWMLPQAEWQPGETLRGTAERTLVTLSENNMEAK----------FLGNAPCGHY-KFKFPQAMRTESNLGAKVFFFKALLLTGDFSEAGKKG-QHVWVTKDELSDYL 263
BLAST of mRNA_E_fasciculatus_S2_contig7560.15723.1 vs.
Match: 39S (ribosomal protein L46, mitochondrial n=32 Tax=Catarrhini TaxID=9526 RepID=RM46_HUMAN) HSP 1 Score: 100 bits (250), Expect = 3.520e-20 Identity = 81/238 (34.03%), Postives = 116/238 (48.74%), Query Frame = 1
Query: 316 SLGLDWGTRSALILERLPVIVEEYTDWQRDF----WDIQTTQAHYG-------------AKFPAEMGFKYDDEKSLT---MEQVLEQS--PVPLAARRTPADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWEPGETIRQTAERTAQQLLQKTATRKGQRDDVAQLHFVGNCPAGWFWRTANGEQGGQHEK-FGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYL 954
S G W AL L+R PV+ + T Q + I+ ++ Y AK A++ + D++ L +E + EQ L AR T ADE NDRT+L+R LD LVL+V+ + GD+ W LP++ W+PGET+R TAERT L + K F+GN P G + T Q + E G KVF + L+ G + + H+WVTK E+G+YL
Sbjct: 40 SNGSPWRLLGALCLQRPPVVSKPLTPLQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEEDEQDILLAQDLEDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQAEWQPGETLRGTAERTLATLSENNMEAK----------FLGNAPCGHY--TFKFPQAMRTESNLGAKVFFFKALLLTGDFSQAGNKG-HHVWVTKDELGDYL 264
BLAST of mRNA_E_fasciculatus_S2_contig7560.15723.1 vs.
Match: 39S (ribosomal protein L46, mitochondrial n=2 Tax=Manis TaxID=9973 RepID=UPI0018763CE2) HSP 1 Score: 100 bits (250), Expect = 3.520e-20 Identity = 78/236 (33.05%), Postives = 113/236 (47.88%), Query Frame = 1
Query: 322 GLDWGTRSALILERLPVIVEEYTDWQRDFW----DIQTTQAHYG-------------AKFPAEMGFKYDDEKSLTMEQVLEQS------PVPLAARRTPADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWEPGETIRQTAERTAQQLLQKTATRKGQRDDVAQLHFVGNCPAGWFWRTANGEQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYL 954
G W AL L+R P++ + T Q + I+ ++ Y AK A+ G + DDE+++ + Q LE + AR T ADE NDRT+L R LD LVL+VK + GDE W LP++ W+PGET+R TAER L + K F+GN P G + + + G KVF + L+ G + +Q H+WV+K E+G+YL
Sbjct: 42 GSPWRLLGALCLQRPPLVSKPLTPLQEEMAALLEQIEIERSLYSDHELRALDEAQQLAKRKADFGDE-DDEQNILLVQDLEDAWEQKFLQFKPGARITEADEKNDRTSLHRQLDRNLVLLVKEKLGDEDVWMLPQAEWQPGETLRGTAERILATLSENNMEAK----------FLGNAPCGHY-KFKFPQAVRTERSLGAKVFFFKALLLTGDFSQAGKQG-RHVWVSKEELGDYL 264
BLAST of mRNA_E_fasciculatus_S2_contig7560.15723.1 vs.
Match: 39S (ribosomal protein L46, mitochondrial n=4 Tax=Suina TaxID=35497 RepID=F1SRT0_PIG) HSP 1 Score: 100 bits (249), Expect = 4.800e-20 Identity = 72/233 (30.90%), Postives = 114/233 (48.93%), Query Frame = 1
Query: 331 WGTRSALILERLPVIVEEYTDWQRDFWDI-----------------QTTQAHYGAKFPAEMGFKYDDEKSLTMEQVLEQS------PVPLAARRTPADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWEPGETIRQTAERTAQQLLQKTATRKGQRDDVAQLHFVGNCPAGWFWRTANGEQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYL 954
W AL L+R P++ + T Q + D+ +A AK +++ ++ +DE+++ + Q LE L AR T AD+ +DRT+L R LD L+L+V+ + GD+ W LP+S W+PGET+RQTAERT L + K F+GN P G + + + G KVF + L+ G + ++ H+WV+K E+G+YL
Sbjct: 45 WRLLGALCLQRPPLVTKPLTPLQEEMADLLQQIEIERSLYSDHELRALDEAQQLAKKKSDL-YEEEDEQNILLAQDLEDMWEQKFLHFKLGARLTEADKKDDRTSLHRKLDRNLILLVREKLGDQDIWMLPQSDWQPGETLRQTAERTLATLSENNMEAK----------FLGNAPCGHY-KFKFPQAMRTETSLGAKVFFFKALLLTGDFSQAGKKG-HHVWVSKEELGDYL 264
BLAST of mRNA_E_fasciculatus_S2_contig7560.15723.1 vs.
Match: 39S (ribosomal protein L46, mitochondrial n=25 Tax=Caniformia TaxID=379584 RepID=A0A384BTS8_URSMA) HSP 1 Score: 100 bits (249), Expect = 4.890e-20 Identity = 77/238 (32.35%), Postives = 115/238 (48.32%), Query Frame = 1
Query: 316 SLGLDWGTRSALILERLPVIVEEYTDWQRDF----WDIQTTQAHYG-------------AKFPAEMGFKYDDEKSLTM----EQVLEQSPVPL--AARRTPADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWEPGETIRQTAERTAQQLLQKTATRKGQRDDVAQLHFVGNCPAGWFWRTANGEQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYL 954
S G W AL L+R P++ + T Q + I+ ++ Y AK A++ + +DE+++ + E V EQ + AR T ADE NDRT+L R LD LVL+VK + GD+ W LP++ W+PGET+R TAERT L + K F+GN P G + + + G KVF + L+ G + ++ H+WV K E+G+YL
Sbjct: 40 SSGSPWRLLGALCLQRPPLVSKALTPLQEEMAALLQQIEVERSMYSDHELRALDEAQRLAKKKADLYDEEEDEQNILLVQDLEDVWEQKFLQFKPGARITEADEKNDRTSLHRKLDRNLVLLVKEKLGDQDVWMLPQTEWQPGETLRGTAERTLATLSENNLEAK----------FLGNAPCGHY-KFKFPQAMRTESSLGAKVFFFKALLLTGDFSQTGKKG-HHVWVCKEELGDYL 265 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7560.15723.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7560.15723.1 >prot_E_fasciculatus_S2_contig7560.15723.1 ID=prot_E_fasciculatus_S2_contig7560.15723.1|Name=mRNA_E_fasciculatus_S2_contig7560.15723.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=309bp MLARRCAMLASSSARIAKLRPLAVLVAPSCREVSSSNLTKKQQIEGFTIKback to top mRNA from alignment at E_fasciculatus_S2_contig7560:327..4918+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7560.15723.1 ID=mRNA_E_fasciculatus_S2_contig7560.15723.1|Name=mRNA_E_fasciculatus_S2_contig7560.15723.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4592bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7560:327..4918+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7560:327..4918+ >mRNA_E_fasciculatus_S2_contig7560.15723.1 ID=mRNA_E_fasciculatus_S2_contig7560.15723.1|Name=mRNA_E_fasciculatus_S2_contig7560.15723.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=927bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7560:327..4918+ (Ectocarpus fasciculatus EfasUO2)back to top |