mRNA_E_fasciculatus_S2_contig7544.15708.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7544.15708.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU31_ECTSI) HSP 1 Score: 244 bits (623), Expect = 1.260e-80 Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 1
Query: 1 VPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKPTRKQVAKTRFVKAGGGVEV 363
VPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVD LYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKPTRKQVAKTRFVKAGGGVEV
Sbjct: 89 VPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDSLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKPTRKQVAKTRFVKAGGGVEV 209
BLAST of mRNA_E_fasciculatus_S2_contig7544.15708.1 vs.
Match: 60s (ribosomal protein l17-2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUF4_9STRA) HSP 1 Score: 150 bits (378), Expect = 9.490e-44 Identity = 75/106 (70.75%), Postives = 84/106 (79.25%), Query Frame = 1
Query: 37 PGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKPTRKQVAKTRFVKAGGG 354
PGS+C WPQKAT+IVLD++ NAESNAE K +D D LYIVH Q NRAPKQRRRTYRAHGRINPYMSSPAH+E+IL+EK V VKK K TRKQ A+ R GGG
Sbjct: 79 PGSQCAWPQKATKIVLDMLTNAESNAEVKGMDTDNLYIVHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVPVKKEPGAPKLTRKQAARVRV---GGG 181
BLAST of mRNA_E_fasciculatus_S2_contig7544.15708.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UCU8_HETAK) HSP 1 Score: 149 bits (376), Expect = 2.350e-43 Identity = 75/112 (66.96%), Postives = 91/112 (81.25%), Query Frame = 1
Query: 34 SPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPK----KPTRKQVAKTRFVKAGGGV 357
+PG+KCRWPQKAT+IVLDL+KNAE+NAE K LD++ L + H+Q NRAPKQRRRTYRAHGRINPYMSSPAHIEL+L+E+ V KG+E + K +RKQ A+ R V GGGV
Sbjct: 77 APGNKCRWPQKATKIVLDLLKNAEANAEVKGLDIESLVVTHIQTNRAPKQRRRTYRAHGRINPYMSSPAHIELLLAEEGSNVAKGEEEEGKQLKLSRKQAARRR-VTVGGGV 187
BLAST of mRNA_E_fasciculatus_S2_contig7544.15708.1 vs.
Match: Aste57867_17649 (protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A485L8A8_9STRA) HSP 1 Score: 147 bits (370), Expect = 1.910e-42 Identity = 76/110 (69.09%), Postives = 88/110 (80.00%), Query Frame = 1
Query: 34 SPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPK--KPTRKQVAKTRFVKAGGGV 357
+PG KCRWPQKATRI+LDLVKNAE+NAE K LDV+ LYI H Q N A KQRRRTYRAHGRI PYM++PAHIELIL+EK+ V K +EPK K +RK+ A R K+GGGV
Sbjct: 78 APGDKCRWPQKATRIILDLVKNAEANAELKGLDVEKLYIAHTQANMAIKQRRRTYRAHGRIGPYMANPAHIELILTEKKENVAKAEEPKAAKVSRKRQAVLRL-KSGGGV 186
BLAST of mRNA_E_fasciculatus_S2_contig7544.15708.1 vs.
Match: Ribosomal (protein L22/L17 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7U9_9STRA) HSP 1 Score: 146 bits (368), Expect = 3.830e-42 Identity = 75/111 (67.57%), Postives = 85/111 (76.58%), Query Frame = 1
Query: 34 SPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKPTRKQVAKTRF--VKAGGGVE 360
+PG K RWPQKAT++VL LVKNAESNA +K LDVD L I H+ N AP+QRRRTYRAHGRIN YMS+P H ELIL+EK VQV K E K +RKQVA RF VK GGG+E
Sbjct: 78 APGDKVRWPQKATKVVLGLVKNAESNAVTKGLDVDKLVITHIMANHAPQQRRRTYRAHGRINAYMSTPGHFELILAEKAVQVPKAAEAPKLSRKQVAAARFKSVKVGGGLE 188
BLAST of mRNA_E_fasciculatus_S2_contig7544.15708.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FZJ5_9STRA) HSP 1 Score: 146 bits (369), Expect = 5.730e-42 Identity = 76/112 (67.86%), Postives = 89/112 (79.46%), Query Frame = 1
Query: 28 FVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKP---TRKQVAKTRFVKAGGG 354
F +PGSK RWPQKA++I+LDL+KNAE+NAE K LDVD L +VH QCNRA +QRRRTYRAHGRINPYMS PAHIEL+L + VKK DE KK TRKQ A+ R +K+GGG
Sbjct: 104 FKAPGSKGRWPQKASKIILDLLKNAEANAEFKGLDVDDLEVVHAQCNRAQQQRRRTYRAHGRINPYMSHPAHIELVLENPKNPVKKEDEDKKVPRLTRKQQAQLR-IKSGGG 214
BLAST of mRNA_E_fasciculatus_S2_contig7544.15708.1 vs.
Match: 50S (ribosomal protein L22 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CFI1_SAPPC) HSP 1 Score: 145 bits (365), Expect = 1.060e-41 Identity = 75/113 (66.37%), Postives = 88/113 (77.88%), Query Frame = 1
Query: 25 TFVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDE--PKKPTRKQVAKTRFVKAGGGV 357
T +PG KCRWPQKAT+I+LDLVKNAE+NAE K LD D LYI H Q N A KQRRRTYRAHGRI PYMS+PAHIELIL+EK+ V K ++ P K +RK+ A+ R K+GGGV
Sbjct: 75 TLNAPGDKCRWPQKATKIILDLVKNAEANAELKGLDTDKLYIAHTQANAAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKKENVAKAEDAAPAKISRKRNAQLRL-KSGGGV 186
BLAST of mRNA_E_fasciculatus_S2_contig7544.15708.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WRP5_9STRA) HSP 1 Score: 143 bits (360), Expect = 8.840e-41 Identity = 75/108 (69.44%), Postives = 87/108 (80.56%), Query Frame = 1
Query: 34 SPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKG-DEPKKPTRKQVAKTRFVKAGGG 354
+PGSK RWPQKAT++VLDLVKNAE+NAE+K LD D L++ H Q NRA KQRRRTYRAHGRINPYMSSPAHIELIL+ E V K D P+K TR++ A+ R VK GGG
Sbjct: 93 APGSKGRWPQKATKVVLDLVKNAEANAETKGLDTDKLFVKHAQANRAQKQRRRTYRAHGRINPYMSSPAHIELILASIEDPVAKAEDAPQKLTRRRQAQLR-VKVGGG 199
BLAST of mRNA_E_fasciculatus_S2_contig7544.15708.1 vs.
Match: Uncharacterized (protein n=25 Tax=Oomycota TaxID=4762 RepID=A0A5D6XKD7_9STRA) HSP 1 Score: 142 bits (357), Expect = 1.780e-40 Identity = 72/110 (65.45%), Postives = 87/110 (79.09%), Query Frame = 1
Query: 34 SPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPK--KPTRKQVAKTRFVKAGGGV 357
+PG KC+WPQKAT+I+LDLVKNAE+NAE K LD D LY+ H Q N A KQRRRTYRAHGRI PYM++PAHIELIL+EK V+K D+ K K +RK+ A+ R K+GGGV
Sbjct: 78 APGDKCKWPQKATKIILDLVKNAEANAEVKGLDTDKLYVSHAQANAAIKQRRRTYRAHGRIGPYMANPAHIELILTEKRDNVQKSDDKKEVKVSRKRQAQLRL-KSGGGV 186
BLAST of mRNA_E_fasciculatus_S2_contig7544.15708.1 vs.
Match: Hypothetical (protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQM1_9STRA) HSP 1 Score: 139 bits (351), Expect = 1.400e-39 Identity = 71/111 (63.96%), Postives = 86/111 (77.48%), Query Frame = 1
Query: 34 SPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDE--PKKPTRKQVAKTRFVKAGGGVE 360
+PGSK RWPQKA++IVLDL+ NAE+NAE K LD D LY+ H QCNRAP RRRTYRAHGRIN YMS PAH+E+IL+E++ V + DE P K +RK+ A+ R K GGGVE
Sbjct: 78 APGSKGRWPQKASKIVLDLLTNAEANAEVKGLDTDALYVTHTQCNRAPPGRRRTYRAHGRINAYMSQPAHVEIILTEQDDAVARADEEKPLKLSRKRKAQLRL-KQGGGVE 187 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7544.15708.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7544.15708.1 >prot_E_fasciculatus_S2_contig7544.15708.1 ID=prot_E_fasciculatus_S2_contig7544.15708.1|Name=mRNA_E_fasciculatus_S2_contig7544.15708.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=122bp VPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIback to top mRNA from alignment at E_fasciculatus_S2_contig7544:204..2007+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7544.15708.1 ID=mRNA_E_fasciculatus_S2_contig7544.15708.1|Name=mRNA_E_fasciculatus_S2_contig7544.15708.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1804bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7544:204..2007+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7544:204..2007+ >mRNA_E_fasciculatus_S2_contig7544.15708.1 ID=mRNA_E_fasciculatus_S2_contig7544.15708.1|Name=mRNA_E_fasciculatus_S2_contig7544.15708.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=366bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7544:204..2007+ (Ectocarpus fasciculatus EfasUO2)back to top |