mRNA_E_fasciculatus_S2_contig7538.15705.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7538.15705.1
Unique NamemRNA_E_fasciculatus_S2_contig7538.15705.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7538.15705.1 vs.
Match: PPM-type (phosphatase domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKT0_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 3.910e-21
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    1 LKKASQGEDSDSDDGEDEVVDMDMLSKINPGAQMQIMEQMKRAMRDQFQSAGDLAEG 171
            LKKASQGEDSDSDDGED VVDM MLSKI P  Q+QIMEQMKRAMRDQFQSAGDLAEG
Sbjct:  126 LKKASQGEDSDSDDGED-VVDMGMLSKIKPETQLQIMEQMKRAMRDQFQSAGDLAEG 181
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7538.15705.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
PPM-type3.910e-2189.47phosphatase domain-containing protein (Fragment) n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7538contigE_fasciculatus_S2_contig7538:424..1623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score85.1
Seed ortholog evalue1.6e-14
Seed eggNOG ortholog2880.D7G3N0
Model size247
KEGG koko:K01090,ko:K14803,ko:K17499,ko:K19705
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0071704,GO:0140096,GO:1901564
Exons3
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
Cds size246
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842415.5370457-CDS-E_fasciculatus_S2_contig7538:424..5361696842415.5370457-CDS-E_fasciculatus_S2_contig7538:424..536Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7538 425..536 -
1696842415.55411-CDS-E_fasciculatus_S2_contig7538:885..9671696842415.55411-CDS-E_fasciculatus_S2_contig7538:885..967Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7538 886..967 -
1696842415.5731719-CDS-E_fasciculatus_S2_contig7538:1571..16231696842415.5731719-CDS-E_fasciculatus_S2_contig7538:1571..1623Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7538 1572..1623 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7538.15705.1prot_E_fasciculatus_S2_contig7538.15705.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7538 425..1623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7538.15705.1

>prot_E_fasciculatus_S2_contig7538.15705.1 ID=prot_E_fasciculatus_S2_contig7538.15705.1|Name=mRNA_E_fasciculatus_S2_contig7538.15705.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=82bp
LKKASQGEDSDSDDGEDEVVDMDMLSKINPGAQMQIMEQMKRAMRDQFQS
AGDLAEGGGGDDDDDDSDGSEHDDDSKYSSEE
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mRNA from alignment at E_fasciculatus_S2_contig7538:424..1623-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7538.15705.1 ID=mRNA_E_fasciculatus_S2_contig7538.15705.1|Name=mRNA_E_fasciculatus_S2_contig7538.15705.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1200bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7538:424..1623- (Ectocarpus fasciculatus EfasUO2)
CTCAAGAAGGCATCACAGGGTGAAGACAGCGACAGCGACGACGGAGAAGA
CGGTGAGAAGAAAAAAAACAGAAAAGTTCCGTTTCGCATCTTGCCGCGAA
CACCAGACTTACTACTCCCCCCCCCAGCGTTAGGGGAGAGGATAAGCAAG
GGAGGTTTGCGTTGCGACGTAGCACCGCCGAGGAGTTGATTCTGCGTGGC
CTCTGATCGGGGGTCTTCAGCTGTAGAGAGGCAAGGCTGTGGTTTGAAGT
TGGACCGGCGGGAGGCAAGAGGAGAAACGTTTCATAATGTTGTTTATTGT
GTGCTGTTTGCGTACATGTGGTTTGGAGTGAGTGCGAGTGACGTGGTATA
TCGCTTCCTCCGTAGGCGCTCATTGGCTTAACTGTACAAATAGAACACTC
GCACGGAGCCCCCACAAGTTGACGCCTATGGAATCAGCGCCGGGCATATA
TTGACGTCTCACGTCTCATAGCGGTCGTGTGCATCTGTTTTTTAGAGATT
ATCCATACACGGTGACAGAAAGACTACCCGTACAAGACAATTACGTACCA
CAGCAGTCGAATATATTCCTGCTTATGTGGTAGTACACCAAGGCGTGTTT
CCTTTATTTTTTTTTAGGTCTCTCCCTTTTTGTGTTTTTTGTGTGTGTTC
TTCCAGAAGTGGTCGACATGGACATGTTGTCGAAGATCAACCCGGGAGCC
CAGATGCAGATCATGGAGCAGATGAAGAGGGCCATGAGGTGAGTAAGCGT
AAAGCGAAGCCACCAAGAGTCAGGTCCTTCTCCCCGCCCCTGGATCTGTG
TGATGCACCCGCATCCTGCGACAAGCTCGGGGAACAGGCATAACGAAAGG
AAGCTGCACGCTTGTGCCCATGCAACGCGGATGTACATAAGAACAGGCCT
TTTCTACATAAGAATAGACCTTTTCTTTCTGTTCGTTTTGGTGTAGTCGC
CACCCGCCTCTGCCTAAGACAGCGCAAAGCAGGCCTTTTTTCTATTTTCT
TGTTGGTTGTTCGATTTGTTCATCTGTCCGGCTAAATGTCACAGCCGCCA
TCGATCATTGCCACACTGTTGCTGCTGCATCCGACAGAGATCAGTTCCAG
AGCGCGGGGGATTTGGCTGAAGGAGGCGGTGGCGACGACGACGACGACGA
CTCCGACGGCTCTGAACACGACGATGATTCAAAATACAGCTCGGAAGAGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7538:424..1623-

>mRNA_E_fasciculatus_S2_contig7538.15705.1 ID=mRNA_E_fasciculatus_S2_contig7538.15705.1|Name=mRNA_E_fasciculatus_S2_contig7538.15705.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=246bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7538:424..1623- (Ectocarpus fasciculatus EfasUO2)
CTCAAGAAGGCATCACAGGGTGAAGACAGCGACAGCGACGACGGAGAAGA
CGAAGTGGTCGACATGGACATGTTGTCGAAGATCAACCCGGGAGCCCAGA
TGCAGATCATGGAGCAGATGAAGAGGGCCATGAGAGATCAGTTCCAGAGC
GCGGGGGATTTGGCTGAAGGAGGCGGTGGCGACGACGACGACGACGACTC
CGACGGCTCTGAACACGACGATGATTCAAAATACAGCTCGGAAGAG
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