mRNA_E_fasciculatus_S2_contig7535.15701.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7535.15701.1
Unique NamemRNA_E_fasciculatus_S2_contig7535.15701.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7535.15701.1 vs.
Match: SH2 (domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY6_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 4.740e-27
Identity = 55/79 (69.62%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:    1 DFISVQAFAKFTRWWAPLMKTLWTIRKDWASTKPLRVHGFIGRLEAERKLFGRKRGTFLLRFSERHPGKLVVSRAHHVS 237
            DFISV+ FAKF+RWW PLM TL  IR DWA T+P+ VHGFIGRLE +  L  R RG FLLRFSE HPGKLV+SRA+H S
Sbjct:  924 DFISVETFAKFSRWWVPLMGTLGIIRNDWARTRPVFVHGFIGRLETDENL-RRARGAFLLRFSESHPGKLVISRAYHHS 1001
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BLAST of mRNA_E_fasciculatus_S2_contig7535.15701.1 vs.
Match: SH2 (domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY4_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 1.360e-22
Identity = 48/73 (65.75%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    1 DFISVQAFAKFTRWWAPLMKTLWTIRKDWASTKPLRVHGFIGRLEAERKLFGRKRGTFLLRFSERHPGKLVVS 219
            DFISV+AFAKF++WWAPL+ TL  IR DWA T+P+RVHGF+ RL A+R L  R+ GTFLLRFSE   G LV+S
Sbjct:  755 DFISVEAFAKFSQWWAPLISTLGIIRNDWARTRPVRVHGFMSRLAAKRLLMQRECGTFLLRFSESKMGALVIS 827
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BLAST of mRNA_E_fasciculatus_S2_contig7535.15701.1 vs.
Match: SH2 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT3_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 6.590e-22
Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    1 DFISVQAFAKFTRWWAPLMKTLWTIRKDWASTKPLRVHGFIGRLEAERKLFGRKRGTFLLRFSERHPGKLVVS 219
            DF+SV+AFA F++WWAPLM TL  IR DWA+T+P+RVHGF+ R+ ++R L  R+ GTFLLRFSE   G LV+S
Sbjct:  258 DFVSVEAFANFSQWWAPLMATLGIIRNDWATTRPVRVHGFMSRVASKRLLMQRECGTFLLRFSESRMGALVIS 330
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7535.15701.1 vs.
Match: SH2 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC67_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.240e-21
Identity = 51/80 (63.75%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    1 DFISVQAFAKFTRWWAPLMKTLWTIRKDWASTKPLRVHGFIGRLEAERKLFGRKRGTFLLRFSERHPGKLVVSRAHHVSS 240
            D ISV  F++F++WW PLM TL  IR DWA   P+RVHGFIGR EA+  L   K   FLLRFSERHPGKLVVSRA H  S
Sbjct:  890 DPISVGTFSRFSQWWTPLMVTLGNIRNDWARIWPIRVHGFIGRHEAQ-ALLRMKPTAFLLRFSERHPGKLVVSRACHHHS 968
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7535.15701.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
SH24.740e-2769.62domain containing protein n=1 Tax=Ectocarpus silic... [more]
SH21.360e-2265.75domain containing protein n=1 Tax=Ectocarpus silic... [more]
SH26.590e-2261.64domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
SH22.240e-2163.75domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7535contigE_fasciculatus_S2_contig7535:6776..7024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score112.5
Seed ortholog evalue9.7e-23
Seed eggNOG ortholog2880.D7FNY6
Model size249
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs28NM8@1,2QV6X@2759
Cds size249
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842415.3135982-CDS-E_fasciculatus_S2_contig7535:6775..70241696842415.3135982-CDS-E_fasciculatus_S2_contig7535:6775..7024Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7535 6776..7024 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7535.15701.1prot_E_fasciculatus_S2_contig7535.15701.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7535 6776..7024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7535.15701.1

>prot_E_fasciculatus_S2_contig7535.15701.1 ID=prot_E_fasciculatus_S2_contig7535.15701.1|Name=mRNA_E_fasciculatus_S2_contig7535.15701.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=83bp
DFISVQAFAKFTRWWAPLMKTLWTIRKDWASTKPLRVHGFIGRLEAERKL
FGRKRGTFLLRFSERHPGKLVVSRAHHVSSTS*
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mRNA from alignment at E_fasciculatus_S2_contig7535:6776..7024-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7535.15701.1 ID=mRNA_E_fasciculatus_S2_contig7535.15701.1|Name=mRNA_E_fasciculatus_S2_contig7535.15701.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=249bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7535:6776..7024- (Ectocarpus fasciculatus EfasUO2)
GACTTCATCTCGGTCCAAGCGTTCGCGAAGTTCACGCGGTGGTGGGCTCC
GCTAATGAAGACGCTGTGGACCATCAGGAAAGACTGGGCGTCGACGAAGC
CGCTCAGGGTGCACGGGTTCATCGGCAGGCTCGAGGCGGAGAGGAAGCTG
TTCGGGCGGAAGCGCGGGACGTTCTTGCTGAGGTTCAGCGAGAGGCACCC
CGGGAAGCTGGTCGTCAGCCGCGCGCATCATGTGAGCAGCACCTCCTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7535:6776..7024-

>mRNA_E_fasciculatus_S2_contig7535.15701.1 ID=mRNA_E_fasciculatus_S2_contig7535.15701.1|Name=mRNA_E_fasciculatus_S2_contig7535.15701.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=249bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7535:6776..7024- (Ectocarpus fasciculatus EfasUO2)
GACTTCATCTCGGTCCAAGCGTTCGCGAAGTTCACGCGGTGGTGGGCTCC
GCTAATGAAGACGCTGTGGACCATCAGGAAAGACTGGGCGTCGACGAAGC
CGCTCAGGGTGCACGGGTTCATCGGCAGGCTCGAGGCGGAGAGGAAGCTG
TTCGGGCGGAAGCGCGGGACGTTCTTGCTGAGGTTCAGCGAGAGGCACCC
CGGGAAGCTGGTCGTCAGCCGCGCGCATCATGTGAGCAGCACCTCCTGA
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