mRNA_E_fasciculatus_S2_contig7533.15698.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7533.15698.1
Unique NamemRNA_E_fasciculatus_S2_contig7533.15698.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7533.15698.1 vs.
Match: Ribosomal_L18_c (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JCG3_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 7.050e-71
Identity = 112/117 (95.73%), Postives = 114/117 (97.44%), Query Frame = 1 
Query:   22 DHPHQAFVKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQDKNKYNSPKYRLVVRFTNKYVLAQIIYATIQGDVCMCQASSTELPRYGCKVGLKNYAAAYCTGLLVARRLLRQL 372
            D   +AFVKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQDKNKYNSPKYRLVVRFTNK+VLAQIIYATIQGDVCMCQASSTELPRYGCKVGLKNYAAAYCTGLLVARRLLRQL
Sbjct:    3 DGSFEAFVKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQDKNKYNSPKYRLVVRFTNKFVLAQIIYATIQGDVCMCQASSTELPRYGCKVGLKNYAAAYCTGLLVARRLLRQL 119
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BLAST of mRNA_E_fasciculatus_S2_contig7533.15698.1 vs.
Match: RL5, (ribosomal protein 5 60S large ribosomal subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBG0_9STRA)

HSP 1 Score: 182 bits (462), Expect = 9.890e-55
Identity = 90/111 (81.08%), Postives = 99/111 (89.19%), Query Frame = 1 
Query:   40 FVKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQDKNKYNSPKYRLVVRFTNKYVLAQIIYATIQGDVCMCQASSTELPRYGCKVGLKNYAAAYCTGLLVARRLLRQL 372
            FVKV K KAYFKRYQVK+RRRREGKTDYRARKRLICQDKNKYN+PKYRLVVRF+N+YV  QI YAT++GD  +CQA+S EL RYG K GLKNYAAAYCTGLL ARRLL+QL
Sbjct:    3 FVKVLKNKAYFKRYQVKYRRRREGKTDYRARKRLICQDKNKYNAPKYRLVVRFSNRYVNCQIAYATVEGDKILCQANSRELERYGLKTGLKNYAAAYCTGLLCARRLLKQL 113
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BLAST of mRNA_E_fasciculatus_S2_contig7533.15698.1 vs.
Match: 60s (ribosomal protein l5 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YST5_NANGC)

HSP 1 Score: 176 bits (446), Expect = 4.410e-54
Identity = 87/114 (76.32%), Postives = 97/114 (85.09%), Query Frame = 1 
Query:   31 HQAFVKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQDKNKYNSPKYRLVVRFTNKYVLAQIIYATIQGDVCMCQASSTELPRYGCKVGLKNYAAAYCTGLLVARRLLRQL 372
            H  FVKV K K YFKRYQ KFRRRREGKTDYRARKR++ QDKNKYN+PKYRLVVRFTN+Y +AQI+YATI GD  +  A+S EL RYG KVGLKNYAAAYCTGLL+ARRLL +L
Sbjct:    6 HIPFVKVLKNKQYFKRYQTKFRRRREGKTDYRARKRMVAQDKNKYNTPKYRLVVRFTNRYCIAQIVYATIDGDKVLAAANSKELARYGLKVGLKNYAAAYCTGLLIARRLLNKL 119
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BLAST of mRNA_E_fasciculatus_S2_contig7533.15698.1 vs.
Match: 60S (ribosomal protein L5 n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NSE8_PHYIT)

HSP 1 Score: 175 bits (443), Expect = 1.890e-53
Identity = 91/124 (73.39%), Postives = 98/124 (79.03%), Query Frame = 1 
Query:    1 LLNLGTNDHPHQAFVKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQDKNKYNSPKYRLVVRFTNKYVLAQIIYATIQGDVCMCQASSTELPRYGCKVGLKNYAAAYCTGLLVARRLLRQL 372
            LL  G        FVKV K KAYFKRYQVK+RRRREGKTDYRARKRLI QDKNKYNSPKYRLVVR TNK V+ QI YA I GD  +CQA+S ELPRYG  VGLKNYAAAY TGLLV RR+L++L
Sbjct:    2 LLFFGNFHQVRMGFVKVLKNKAYFKRYQVKYRRRREGKTDYRARKRLITQDKNKYNSPKYRLVVRITNKQVICQIAYAEIDGDKILCQATSAELPRYGLTVGLKNYAAAYATGLLVGRRVLQKL 125
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BLAST of mRNA_E_fasciculatus_S2_contig7533.15698.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C5V7_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.980e-52
Identity = 88/111 (79.28%), Postives = 98/111 (88.29%), Query Frame = 1 
Query:   40 FVKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQDKNKYNSPKYRLVVRFTNKYVLAQIIYATIQGDVCMCQASSTELPRYGCKVGLKNYAAAYCTGLLVARRLLRQL 372
            FVKV K KAYFKRYQVKFRRRREGKTDYRARKRL+CQD+NKYN+PKYRLVVRF+NK  + QI+Y+ I GD  MC ASSTEL RYG KVGLKNYAAAYCTGLL ARRLL+++
Sbjct:    3 FVKVVKNKAYFKRYQVKFRRRREGKTDYRARKRLVCQDRNKYNTPKYRLVVRFSNKACICQIVYSEIVGDKVMCCASSTELGRYGLKVGLKNYAAAYCTGLLCARRLLKKI 113
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BLAST of mRNA_E_fasciculatus_S2_contig7533.15698.1 vs.
Match: Hypothetical (protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BVS7_9STRA)

HSP 1 Score: 175 bits (443), Expect = 9.550e-52
Identity = 88/110 (80.00%), Postives = 95/110 (86.36%), Query Frame = 1 
Query:   40 FVKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQDKNKYNSPKYRLVVRFTNKYVLAQIIYATIQGDVCMCQASSTELPRYGCKVGLKNYAAAYCTGLLVARRLLRQ 369
            FVKVQK+KAYF R+QVKFRRRREGKTDYR RKRL CQDKNKY SPKYRLVVRFTN+ V+ QI YA I GD  +CQASSTEL RYG  VGLKNYAAAYCTGLL ARRLL++
Sbjct:   21 FVKVQKSKAYFSRFQVKFRRRREGKTDYRQRKRLCCQDKNKYQSPKYRLVVRFTNRQVICQIAYALIDGDRILCQASSTELGRYGLSVGLKNYAAAYCTGLLCARRLLQK 130
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BLAST of mRNA_E_fasciculatus_S2_contig7533.15698.1 vs.
Match: Ribosomal_L18_c (domain-containing protein n=4 Tax=cellular organisms TaxID=131567 RepID=A0A4D9DC45_9STRA)

HSP 1 Score: 174 bits (442), Expect = 9.610e-52
Identity = 86/111 (77.48%), Postives = 96/111 (86.49%), Query Frame = 1 
Query:   40 FVKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQDKNKYNSPKYRLVVRFTNKYVLAQIIYATIQGDVCMCQASSTELPRYGCKVGLKNYAAAYCTGLLVARRLLRQL 372
            FVKV K K YFKRYQ KFRRRREGKTDYRARKR++ QDKNKYN+PKYRLVVRFTN+Y +AQI+YATI GD  +  A+S EL RYG KVGLKNYAAAYCTGLL+ARRLL +L
Sbjct:    3 FVKVLKNKQYFKRYQTKFRRRREGKTDYRARKRMVAQDKNKYNTPKYRLVVRFTNRYCIAQIVYATIDGDKVLAAANSKELARYGLKVGLKNYAAAYCTGLLIARRLLNKL 113
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BLAST of mRNA_E_fasciculatus_S2_contig7533.15698.1 vs.
Match: Ribosomal (protein L5 (Fragment) n=1 Tax=Artemia franciscana TaxID=6661 RepID=B7TJH5_ARTSF)

HSP 1 Score: 167 bits (423), Expect = 1.580e-51
Identity = 83/108 (76.85%), Postives = 94/108 (87.04%), Query Frame = 1 
Query:   40 FVKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQDKNKYNSPKYRLVVRFTNKYVLAQIIYATIQGDVCMCQASSTELPRYGCKVGLKNYAAAYCTGLLVARRLL 363
            FVKV K KAYFKR+QVKFRRRREGKTDY AR+RL+ QDKNKYN+PKYR+VVRFTNK ++ QI YA I+GDV +C A + ELPRYG KVGL NYAAAYCTGLL+ARRLL
Sbjct:    3 FVKVVKNKAYFKRFQVKFRRRREGKTDYYARRRLVIQDKNKYNTPKYRMVVRFTNKDIVCQIAYARIEGDVIVCAAYAHELPRYGIKVGLTNYAAAYCTGLLLARRLL 110
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BLAST of mRNA_E_fasciculatus_S2_contig7533.15698.1 vs.
Match: Hypothetical (protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3XCV7_9CHLO)

HSP 1 Score: 172 bits (437), Expect = 2.860e-51
Identity = 87/112 (77.68%), Postives = 96/112 (85.71%), Query Frame = 1 
Query:   37 AFVKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQDKNKYNSPKYRLVVRFTNKYVLAQIIYATIQGDVCMCQASSTELPRYGCKVGLKNYAAAYCTGLLVARRLLRQL 372
            A +KV KTKAYFKRYQVKFRRRREGKTDYRAR RL+ QDKNKY +PKYRLV RF+NK VLAQ+  AT+ GDV +C ASS ELPRYG KVGL NYAAAYC GLLVARR+L+QL
Sbjct:    2 AVMKVTKTKAYFKRYQVKFRRRREGKTDYRARTRLVLQDKNKYGAPKYRLVARFSNKQVLAQVTKATLAGDVVVCSASSAELPRYGLKVGLTNYAAAYCVGLLVARRMLQQL 113
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BLAST of mRNA_E_fasciculatus_S2_contig7533.15698.1 vs.
Match: Ribosomal_L18_c (domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NKC3_PICSI)

HSP 1 Score: 172 bits (437), Expect = 3.270e-51
Identity = 88/111 (79.28%), Postives = 99/111 (89.19%), Query Frame = 1 
Query:   40 FVKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQDKNKYNSPKYRLVVRFTNKYVLAQIIYATIQGDVCMCQASSTELPRYGCKVGLKNYAAAYCTGLLVARRLLRQL 372
            FVK QKT+AYFKR+QVKF+RRREGKTDYRAR RLI QDKNKYN+PKYRLVVRF+NK V+AQIIYAT+ GDV M  A S ELPRYG +VGL NYAAAYCTGLL+ARR+L+QL
Sbjct:    3 FVKAQKTRAYFKRFQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRLVVRFSNKDVVAQIIYATLAGDVVMAAAYSRELPRYGLEVGLTNYAAAYCTGLLLARRVLKQL 113
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7533.15698.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Ribosomal_L18_c7.050e-7195.73domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
RL5,9.890e-5581.08ribosomal protein 5 60S large ribosomal subunit n=... [more]
60s4.410e-5476.32ribosomal protein l5 n=1 Tax=Nannochloropsis gadit... [more]
60S1.890e-5373.39ribosomal protein L5 n=1 Tax=Phytophthora infestan... [more]
Hypothetical1.980e-5279.28protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Hypothetical9.550e-5280.00protein n=1 Tax=Proboscia inermis TaxID=420281 Rep... [more]
Ribosomal_L18_c9.610e-5277.48domain-containing protein n=4 Tax=cellular organis... [more]
Ribosomal1.580e-5176.85protein L5 (Fragment) n=1 Tax=Artemia franciscana ... [more]
Hypothetical2.860e-5177.68protein n=1 Tax=Picocystis salinarum TaxID=88271 R... [more]
Ribosomal_L18_c3.270e-5179.28domain-containing protein n=1 Tax=Picea sitchensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7533contigE_fasciculatus_S2_contig7533:330..701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score223.8
Seed ortholog evalue4.5e-56
Seed eggNOG ortholog2880.D8LR22
Preferred nameRPL5
Model size372
KEGG koko:K02932
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0003735,GO:0004857,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009987,GO:0010035,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010921,GO:0010922,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0017101,GO:0019220,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0023051,GO:0030162,GO:0030234,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031625,GO:0031647,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032991,GO:0033036,GO:0033365,GO:0034248,GO:0034250,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035303,GO:0035306,GO:0042176,GO:0042177,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0042886,GO:0043043,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044389,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045727,GO:0045861,GO:0045937,GO:0046483,GO:0046700,GO:0046907,GO:0048027,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051248,GO:0051336,GO:0051338,GO:0051340,GO:0051345,GO:0051348,GO:0051351,GO:0051438,GO:0051444,GO:0051641,GO:0051649,GO:0051716,GO:0055105,GO:0055106,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070887,GO:0070925,GO:0070972,GO:0071241,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0098772,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901796,GO:1902531,GO:1903050,GO:1903051,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1903630,GO:1903632,GO:1904666,GO:1904667,GO:1905015,GO:1905017,GO:1905018,GO:1905020,GO:1905021,GO:1905023,GO:1990904,GO:1990948,GO:2000058,GO:2000059,GO:2000112,GO:2000434,GO:2000435
Exons1
EggNOG free text desc.5S rRNA binding
EggNOG OGsCOG0256@1,KOG0875@2759
Cds size372
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01009,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842415.086479-CDS-E_fasciculatus_S2_contig7533:329..7011696842415.086479-CDS-E_fasciculatus_S2_contig7533:329..701Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7533 330..701 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7533.15698.1prot_E_fasciculatus_S2_contig7533.15698.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7533 330..701 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7533.15698.1

>prot_E_fasciculatus_S2_contig7533.15698.1 ID=prot_E_fasciculatus_S2_contig7533.15698.1|Name=mRNA_E_fasciculatus_S2_contig7533.15698.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=124bp
LLNLGTNDHPHQAFVKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQ
DKNKYNSPKYRLVVRFTNKYVLAQIIYATIQGDVCMCQASSTELPRYGCK
VGLKNYAAAYCTGLLVARRLLRQL
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mRNA from alignment at E_fasciculatus_S2_contig7533:330..701-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7533.15698.1 ID=mRNA_E_fasciculatus_S2_contig7533.15698.1|Name=mRNA_E_fasciculatus_S2_contig7533.15698.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=372bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7533:330..701- (Ectocarpus fasciculatus EfasUO2)
CTTTTGAATCTGGGGACGAACGACCACCCTCACCAGGCGTTCGTCAAGGT
CCAGAAGACGAAGGCGTACTTCAAGCGCTACCAGGTGAAGTTCCGCCGCA
GGCGCGAGGGCAAGACCGACTACCGGGCCCGCAAGAGGCTCATCTGCCAG
GACAAGAACAAGTACAACTCCCCCAAGTACAGGCTGGTCGTGCGCTTCAC
CAACAAGTACGTGCTGGCGCAGATCATCTACGCCACCATCCAGGGGGACG
TGTGCATGTGCCAGGCCTCCTCCACGGAGCTCCCCCGGTACGGCTGCAAG
GTCGGGCTCAAGAACTACGCCGCGGCGTACTGCACTGGGCTCCTGGTGGC
CCGCCGCCTGCTCCGTCAGCTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7533:330..701-

>mRNA_E_fasciculatus_S2_contig7533.15698.1 ID=mRNA_E_fasciculatus_S2_contig7533.15698.1|Name=mRNA_E_fasciculatus_S2_contig7533.15698.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=372bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7533:330..701- (Ectocarpus fasciculatus EfasUO2)
CTTTTGAATCTGGGGACGAACGACCACCCTCACCAGGCGTTCGTCAAGGT
CCAGAAGACGAAGGCGTACTTCAAGCGCTACCAGGTGAAGTTCCGCCGCA
GGCGCGAGGGCAAGACCGACTACCGGGCCCGCAAGAGGCTCATCTGCCAG
GACAAGAACAAGTACAACTCCCCCAAGTACAGGCTGGTCGTGCGCTTCAC
CAACAAGTACGTGCTGGCGCAGATCATCTACGCCACCATCCAGGGGGACG
TGTGCATGTGCCAGGCCTCCTCCACGGAGCTCCCCCGGTACGGCTGCAAG
GTCGGGCTCAAGAACTACGCCGCGGCGTACTGCACTGGGCTCCTGGTGGC
CCGCCGCCTGCTCCGTCAGCTG
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