mRNA_E_fasciculatus_S2_contig7531.15697.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7531.15697.1
Unique NamemRNA_E_fasciculatus_S2_contig7531.15697.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7531.15697.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B8_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 7.520e-16
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 MSTISKAEGQRKLSQILSSKRKQDPVGLLRAQRNGTLNE 117
            MSTISKAEGQRKLSQILSSKRK+DPVGLLRAQRNGTLNE
Sbjct:    1 MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNE 39
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BLAST of mRNA_E_fasciculatus_S2_contig7531.15697.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRQ3_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.070e-13
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 MSTISKAEGQRKLSQILSSKRKQDPVGLLRAQRNGTLNE 117
            MSTISKAEGQRKLSQILSSKRK+DPVGLLRAQRNGTLNE
Sbjct:    1 MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNE 39
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7531.15697.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized7.520e-1697.44protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.070e-1397.44protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7531contigE_fasciculatus_S2_contig7531:4951..5600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size117
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_002100.1
Cds size117
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842415.0430934-CDS-E_fasciculatus_S2_contig7531:4950..49981696842415.0430934-CDS-E_fasciculatus_S2_contig7531:4950..4998Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7531 4951..4998 -
1696842415.0582645-CDS-E_fasciculatus_S2_contig7531:5531..56001696842415.0582645-CDS-E_fasciculatus_S2_contig7531:5531..5600Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7531 5532..5600 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7531.15697.1prot_E_fasciculatus_S2_contig7531.15697.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7531 4951..5600 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7531.15697.1

>prot_E_fasciculatus_S2_contig7531.15697.1 ID=prot_E_fasciculatus_S2_contig7531.15697.1|Name=mRNA_E_fasciculatus_S2_contig7531.15697.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=39bp
MSTISKAEGQRKLSQILSSKRKQDPVGLLRAQRNGTLNE
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mRNA from alignment at E_fasciculatus_S2_contig7531:4951..5600-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7531.15697.1 ID=mRNA_E_fasciculatus_S2_contig7531.15697.1|Name=mRNA_E_fasciculatus_S2_contig7531.15697.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=650bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7531:4951..5600- (Ectocarpus fasciculatus EfasUO2)
ATGAGCACCATCAGCAAAGCGGAAGGACAGAGGAAACTCAGCCAAATCCT
AAGCTCGAAGCGCAAACAGGTATGCACATTAGAACGGGGGTTCTAATGTG
TCAAGTGTTGCGCGTGTGTCGTGCTCCGCAGGTTTCCGTCCAGTTCCCTG
CGCCGAGATTGTATGTTTTTTATTGAGCCGGTTCTTCTTTGTTGGAGCAA
CAACACCGCCGCCCTGCTGTCCTGCTGTGCTGTGTGTACCTCGCCTCGCT
TGTCCACGCCCCTAACCCTCGCTGGAACGATCTTGCTTGTTCGCCGTGCG
CGCGGGGGGGGGTCGTGCGCACTTGGACCACAAATCAATTCAAAACGACG
ACGAGGATTAGGTGCGTGCTGCGTGCACACAAGAAATTTACGCCCACAGA
CCACGCTAATCTTCGGTGCGTGTTTTTGGCTGTTTGGGCGTGGAACCCAG
CTTGCCGACGATGTCACTTTTGGAACAACAACACGCGCTTTTGTTTAAAA
CCCTTGCTCTCTCTCTCTCCTGCCCCCGCGCGCGCACTCGCCTGTGCAAT
TGTTCTCTTGCGGCGGTGTCGGCCGGTATCGCACGCTGACTGACCGAATC
AGGACCCCGTGGGCCTGCTCCGAGCTCAGCGAAACGGAACACTCAACGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7531:4951..5600-

>mRNA_E_fasciculatus_S2_contig7531.15697.1 ID=mRNA_E_fasciculatus_S2_contig7531.15697.1|Name=mRNA_E_fasciculatus_S2_contig7531.15697.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=117bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7531:4951..5600- (Ectocarpus fasciculatus EfasUO2)
ATGAGCACCATCAGCAAAGCGGAAGGACAGAGGAAACTCAGCCAAATCCT
AAGCTCGAAGCGCAAACAGGACCCCGTGGGCCTGCTCCGAGCTCAGCGAA
ACGGAACACTCAACGAG
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