mRNA_E_fasciculatus_S2_contig7531.15696.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7531.15696.1
Unique NamemRNA_E_fasciculatus_S2_contig7531.15696.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7531.15696.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY5_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 9.920e-43
Identity = 103/150 (68.67%), Postives = 114/150 (76.00%), Query Frame = 2 
Query:   59 VVRDMEAETAPELVQQGPDGGTNGVLNTVSDSATFPTEDIGALALNASGLDSAAASSSQIVVKEGGDLAGSVPEDMEYPTEETAPAAXXXXXXDAVLAEETTVXXXEAVPEPEAAPAAAETVEAVSGDGEKRGSWMSGLASSMGFGADAS 508
            + RDMEA TAPELVQ+G DGGT+GVLN VSDS+TFP E++GALA +A GLDSAA S +QIVV+EGG  A SVPED+EYPTEETAPAA      DAVLAEE        VPEP  A AA+ TV   SGDGEK GSWMSGLASSMGFG  AS
Sbjct:    1 MARDMEAATAPELVQEGLDGGTSGVLNPVSDSSTFPNEEMGALASSAGGLDSAAGSLAQIVVEEGGVRAASVPEDVEYPTEETAPAAAGTA--DAVLAEEAPAAAAAVVPEP--ATAASNTV---SGDGEKAGSWMSGLASSMGFGDGAS 143
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7531.15696.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized9.920e-4368.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7531contigE_fasciculatus_S2_contig7531:978..2139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size670
Hectar predicted targeting categoryother localisation
Exons2
Cds size600
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842414.9903364-CDS-E_fasciculatus_S2_contig7531:977..14751696842414.9903364-CDS-E_fasciculatus_S2_contig7531:977..1475Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7531 978..1475 -
1696842415.001159-CDS-E_fasciculatus_S2_contig7531:1967..20691696842415.001159-CDS-E_fasciculatus_S2_contig7531:1967..2069Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7531 1968..2069 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842415.0111356-UTR-E_fasciculatus_S2_contig7531:2069..21391696842415.0111356-UTR-E_fasciculatus_S2_contig7531:2069..2139Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7531 2070..2139 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7531.15696.1prot_E_fasciculatus_S2_contig7531.15696.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7531 978..2069 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7531.15696.1

>prot_E_fasciculatus_S2_contig7531.15696.1 ID=prot_E_fasciculatus_S2_contig7531.15696.1|Name=mRNA_E_fasciculatus_S2_contig7531.15696.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=200bp
MEAETAPELVQQGPDGGTNGVLNTVSDSATFPTEDIGALALNASGLDSAA
ASSSQIVVKEGGDLAGSVPEDMEYPTEETAPAAAAAAAADAVLAEETTVA
AAEAVPEPEAAPAAAETVEAVSGDGEKRGSWMSGLASSMGFGADASADKS
SVAAAGGEGGEAEEADEAEEEDEESVEVLEVVVEPSSSADGDGAAVATAA
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mRNA from alignment at E_fasciculatus_S2_contig7531:978..2139-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7531.15696.1 ID=mRNA_E_fasciculatus_S2_contig7531.15696.1|Name=mRNA_E_fasciculatus_S2_contig7531.15696.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1162bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7531:978..2139- (Ectocarpus fasciculatus EfasUO2)
AGAGAAGGAGGAGGAGGAGTTTATTTCATAAGGGTATTACATATACGGGG
GGGAAGAGGTTGTGAGAGATATGGAGGCAGAGACCGCGCCGGAGTTGGTC
CAGCAGGGACCGGACGGTGGCACAAACGGTGTGCTCAACACGGTTTCCGA
CTCCGCCACGTTCCCTACTGAGGTGAGCAGCATGCCGTGTGTTGTCCCAG
TTGGGTCGAGGCCGCTGCCGCAGCCGCTTCACGCAGACCGTGCAAATAGA
TGCATAACGATGAGTGTGTGAGGTTGTTTGGAAGGGCCTGTTTGTCTTCC
GTTCTTTCACGCTCGTCTCCGTTGGAATGGTGAGGCGGAGAGGTGGCGGA
CGGTAGTCGTTTATCAGAGCCATCGCAGGGCTGGCACCGGGAGCCTGTCG
GTACTGTACTGGCACCAGCACATGGACGTTTTTTTTATCGAAATTCATTT
TTTGAGGCGTGAGAAACGTCCGAGACGTCTAACGCTTGAATTTTTGTTTT
CGCCGCCATTTGGCATTTTATCTTTCTTCTCTTCCTCTCACCCCGCACAC
GCGAATGTCACCCCTGGAAATAACGCAAGACGCCTCTTAGATGGACATAT
CCTTTGACCGTCATGCCTCCTCCCCCTTGCCTCCTCCCAAAATAATCCGA
CCTTCTCCTTCCAGGATATCGGGGCTCTGGCGTTAAACGCATCAGGGCTT
GACTCGGCCGCGGCATCTTCGTCGCAAATCGTGGTTAAGGAAGGTGGCGA
TCTTGCCGGCTCTGTCCCCGAGGACATGGAGTACCCTACAGAAGAGACAG
CCCCGGCAGCAGCAGCAGCAGCAGCAGCAGATGCGGTGCTAGCGGAAGAA
ACAACGGTGGCTGCGGCGGAAGCGGTGCCGGAACCGGAAGCGGCGCCTGC
GGCGGCGGAAACGGTGGAAGCGGTGTCCGGCGACGGAGAGAAGAGAGGCA
GTTGGATGTCGGGACTGGCGTCCAGCATGGGGTTCGGGGCCGATGCTAGC
GCCGACAAAAGCAGCGTCGCCGCCGCCGGTGGGGAAGGGGGGGAGGCGGA
GGAGGCGGACGAGGCGGAAGAAGAGGATGAGGAATCAGTCGAGGTCCTCG
AGGTCGTCGTCGAACCGTCATCGTCGGCTGACGGCGACGGTGCGGCGGTG
GCGACAGCAGCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7531:978..2139-

>mRNA_E_fasciculatus_S2_contig7531.15696.1 ID=mRNA_E_fasciculatus_S2_contig7531.15696.1|Name=mRNA_E_fasciculatus_S2_contig7531.15696.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=600bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7531:978..2139- (Ectocarpus fasciculatus EfasUO2)
ATGGAGGCAGAGACCGCGCCGGAGTTGGTCCAGCAGGGACCGGACGGTGG
CACAAACGGTGTGCTCAACACGGTTTCCGACTCCGCCACGTTCCCTACTG
AGGATATCGGGGCTCTGGCGTTAAACGCATCAGGGCTTGACTCGGCCGCG
GCATCTTCGTCGCAAATCGTGGTTAAGGAAGGTGGCGATCTTGCCGGCTC
TGTCCCCGAGGACATGGAGTACCCTACAGAAGAGACAGCCCCGGCAGCAG
CAGCAGCAGCAGCAGCAGATGCGGTGCTAGCGGAAGAAACAACGGTGGCT
GCGGCGGAAGCGGTGCCGGAACCGGAAGCGGCGCCTGCGGCGGCGGAAAC
GGTGGAAGCGGTGTCCGGCGACGGAGAGAAGAGAGGCAGTTGGATGTCGG
GACTGGCGTCCAGCATGGGGTTCGGGGCCGATGCTAGCGCCGACAAAAGC
AGCGTCGCCGCCGCCGGTGGGGAAGGGGGGGAGGCGGAGGAGGCGGACGA
GGCGGAAGAAGAGGATGAGGAATCAGTCGAGGTCCTCGAGGTCGTCGTCG
AACCGTCATCGTCGGCTGACGGCGACGGTGCGGCGGTGGCGACAGCAGCG
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