mRNA_E_fasciculatus_S2_contig7530.15695.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7530.15695.1
Unique NamemRNA_E_fasciculatus_S2_contig7530.15695.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7530.15695.1 vs.
Match: RNA-directed (DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 6.680e-33
Identity = 61/77 (79.22%), Postives = 70/77 (90.91%), Query Frame = 1 
Query:  271 VRKRIVGDKSCPVYAGPSAGPLTLANSAVMLQDKVMSVLRNIDSGRMRLEPDVFVDGKYTTVADSLTPRRVELLSDL 501
            +RKRI GDK CPVY GPS+GPLT+ANSAVMLQDKVMSVLRN++SG+MRLEPDV+VDG+Y T AD  TPRRVEL+SDL
Sbjct:    1 MRKRIAGDKPCPVYGGPSSGPLTIANSAVMLQDKVMSVLRNVESGKMRLEPDVYVDGRYVTFADEFTPRRVELISDL 77
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BLAST of mRNA_E_fasciculatus_S2_contig7530.15695.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D8_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.020e-29
Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:    1 ALRDAGWSYTGAPATGGLLAAGRPGPGQHYAGGADTGVLPASAWDPRGVDSPHDGARPAAAYERSSGRDSAPA 219
            ALRDAGWSYT APATGGL A+  PGPGQ+YAGGAD GVLPA A +PRGVDSPHDGARPAAA ERSS RDSAP+
Sbjct:   21 ALRDAGWSYTEAPATGGLHASSHPGPGQYYAGGADAGVLPAPAGEPRGVDSPHDGARPAAAEERSSWRDSAPS 93
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BLAST of mRNA_E_fasciculatus_S2_contig7530.15695.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY5_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.520e-29
Identity = 56/71 (78.87%), Postives = 66/71 (92.96%), Query Frame = 1 
Query:  289 GDKSCPVYAGPSAGPLTLANSAVMLQDKVMSVLRNIDSGRMRLEPDVFVDGKYTTVADSLTPRRVELLSDL 501
            GD+ CPVY GPS+GPLT+ANSAVMLQDKVMSVLRN++SG+MRLEPDV+VDG++ TVAD  TPRRVEL+SDL
Sbjct:  190 GDQPCPVYGGPSSGPLTIANSAVMLQDKVMSVLRNVESGKMRLEPDVYVDGRFVTVADEFTPRRVELISDL 260
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7530.15695.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J849_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 3.400e-28
Identity = 58/87 (66.67%), Postives = 67/87 (77.01%), Query Frame = 1 
Query:  271 VRKRIVGDKSCPVYAGPSAGPLTLANSAVM-----------LQDKVMSVLRNIDSGRMRLEPDVFVDGKYTTVADSLTPRRVELLSD 498
            +RKRI GDK CPVY GPS+GPLT+ANSAVM           L DKVMSVL N++SG+MRLEPDV+VDG+Y T AD  TPRRVEL+SD
Sbjct:    1 MRKRIAGDKPCPVYGGPSSGPLTIANSAVMXXXXXXXXXXMLLDKVMSVLHNVESGKMRLEPDVYVDGRYVTFADEFTPRRVELISD 87
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7530.15695.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ17_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 6.400e-18
Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:  253 AKLVDRVRKRIVGDKSCPVYAGPSAGPLTLANSAVMLQDKVMSVLRNIDSGRMRLEPDVFVDGKYTTVADSLTPRRVELLSDL 501
            +K+++R RKR+    S PVYAGP  G L++ N AV LQ KVMS+LR +DSG + LEPDVF++G + T  D  T RR ELL+DL
Sbjct:    2 SKVIERARKRVTDKVSGPVYAGPGPGELSINNCAVRLQQKVMSILRTLDSGVIALEPDVFLNGYWATQPDVHTRRR-ELLTDL 83
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7530.15695.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7F8_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.540e-15
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:  358 MLQDKVMSVLRNIDSGRMRLEPDVFVDGKYTTVADSLTPRRVELLSDL 501
            MLQDKVMSVLR +DSG MRLEPDV+V+G+Y TVAD LTPRRVELLSDL
Sbjct:    1 MLQDKVMSVLRTVDSGMMRLEPDVYVNGQYITVADDLTPRRVELLSDL 48
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7530.15695.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFF6_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.270e-11
Identity = 41/86 (47.67%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:  244 NQTAKLVDRVRKRIVGDKSCPVYAGPSAGPLTLANSAVMLQDKVMSVLRNIDSGRMRLEPDVFVDGKYTTVADSLTPRRVELLSDL 501
            NQ +K+            S  VYAGP  G L++ N AV L+ KV+SVLR +DSG + LEPDVF +G   T  D  T RR ELL+DL
Sbjct:  126 NQMSKVXXXXXXXXXDKVSGQVYAGPGPGELSMNNRAVRLRQKVISVLRTLDSGVIALEPDVFPNGFRATQPDVHTGRRRELLTDL 211
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7530.15695.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
RNA-directed6.680e-3379.22DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
Uncharacterized1.020e-2982.19protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Integrase1.520e-2978.87catalytic domain-containing protein n=1 Tax=Ectoca... [more]
Uncharacterized3.400e-2866.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.400e-1854.22protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Integrase2.540e-1583.33catalytic domain-containing protein n=1 Tax=Ectoca... [more]
Uncharacterized1.270e-1147.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7530contigE_fasciculatus_S2_contig7530:73..573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size501
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_007420.1
Cds size501
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842414.9485712-CDS-E_fasciculatus_S2_contig7530:72..5731696842414.9485712-CDS-E_fasciculatus_S2_contig7530:72..573Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7530 73..573 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7530.15695.1prot_E_fasciculatus_S2_contig7530.15695.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7530 73..573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7530.15695.1

>prot_E_fasciculatus_S2_contig7530.15695.1 ID=prot_E_fasciculatus_S2_contig7530.15695.1|Name=mRNA_E_fasciculatus_S2_contig7530.15695.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=167bp
ALRDAGWSYTGAPATGGLLAAGRPGPGQHYAGGADTGVLPASAWDPRGVD
SPHDGARPAAAYERSSGRDSAPAPGRQGYDHNQTAKLVDRVRKRIVGDKS
CPVYAGPSAGPLTLANSAVMLQDKVMSVLRNIDSGRMRLEPDVFVDGKYT
TVADSLTPRRVELLSDL
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mRNA from alignment at E_fasciculatus_S2_contig7530:73..573+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7530.15695.1 ID=mRNA_E_fasciculatus_S2_contig7530.15695.1|Name=mRNA_E_fasciculatus_S2_contig7530.15695.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=501bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7530:73..573+ (Ectocarpus fasciculatus EfasUO2)
GCTCTACGGGACGCCGGCTGGTCCTACACGGGAGCTCCTGCTACCGGGGG
GCTGCTCGCGGCCGGTCGTCCTGGACCTGGCCAGCACTACGCGGGGGGAG
CGGACACCGGAGTACTGCCCGCTTCTGCTTGGGACCCTCGGGGAGTCGAC
TCGCCCCACGACGGTGCCAGGCCGGCTGCTGCATACGAGCGTTCTTCAGG
GAGGGACTCGGCCCCGGCACCAGGTAGACAGGGGTATGATCACAACCAGA
CGGCTAAGCTCGTAGATCGTGTGCGTAAGAGGATCGTTGGAGACAAGTCG
TGCCCGGTGTATGCAGGCCCTTCCGCAGGCCCTCTCACACTAGCCAATTC
CGCCGTTATGCTGCAAGACAAAGTCATGAGTGTGCTTCGAAACATCGATT
CGGGTAGGATGAGGTTGGAACCGGATGTGTTTGTCGACGGCAAGTACACC
ACTGTAGCCGACTCCCTCACCCCTCGCCGTGTAGAGCTCCTCTCCGACTT
G
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7530:73..573+

>mRNA_E_fasciculatus_S2_contig7530.15695.1 ID=mRNA_E_fasciculatus_S2_contig7530.15695.1|Name=mRNA_E_fasciculatus_S2_contig7530.15695.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=501bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7530:73..573+ (Ectocarpus fasciculatus EfasUO2)
GCTCTACGGGACGCCGGCTGGTCCTACACGGGAGCTCCTGCTACCGGGGG
GCTGCTCGCGGCCGGTCGTCCTGGACCTGGCCAGCACTACGCGGGGGGAG
CGGACACCGGAGTACTGCCCGCTTCTGCTTGGGACCCTCGGGGAGTCGAC
TCGCCCCACGACGGTGCCAGGCCGGCTGCTGCATACGAGCGTTCTTCAGG
GAGGGACTCGGCCCCGGCACCAGGTAGACAGGGGTATGATCACAACCAGA
CGGCTAAGCTCGTAGATCGTGTGCGTAAGAGGATCGTTGGAGACAAGTCG
TGCCCGGTGTATGCAGGCCCTTCCGCAGGCCCTCTCACACTAGCCAATTC
CGCCGTTATGCTGCAAGACAAAGTCATGAGTGTGCTTCGAAACATCGATT
CGGGTAGGATGAGGTTGGAACCGGATGTGTTTGTCGACGGCAAGTACACC
ACTGTAGCCGACTCCCTCACCCCTCGCCGTGTAGAGCTCCTCTCCGACTT
G
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