mRNA_E_fasciculatus_S2_contig753.15692.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig753.15692.1 vs.
Match: DNL-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA9_9PHAE) HSP 1 Score: 421 bits (1082), Expect = 1.050e-145 Identity = 217/267 (81.27%), Postives = 229/267 (85.77%), Query Frame = 1
Query: 52 MNAIQYALVLLCAMAVDSFHVPVPLS-IGRNVVSCSAQHQLLHLLSAKGRGEGIEPEEPLFEGPILLPPADYSKPGRVVNLGDGDGAEVGHVMLNRKITLSFTCNVCDGQES--INRVSFMQGIVVLWCQHCNQKHLIADNLGKLDFPEFGRNLEEFMAKKGTPVRRVVMGRDGLSHVQVEVPGKDYPEVNPHLVTRDEDGEEVLREGFDGMSLLPGAHVGGAHYLPGVPPPP----LRQEVAGGGD--DIVEGDWEEDVVDGPPDV 825
M AIQYALVLLC MAV SFHVP+PLS I R++V CSA+ L LLSA+ RG GIEPEEPLFEGPILLPPADY+KPGRVVNLGD DGAEVGHVMLNRKITLSFTCNVCDG + INRVSFMQGIVVLWCQHCNQKHLIADNLGKLDFPEFGRNLEEFMAKKGTPV+RVVM RDGLSHVQV VPGKDYPEVNPH VTRDED EE LREGFD MSLLP AHVGGA YL GVP LRQEV G GD D+V+G+WE DVVDGPP+V
Sbjct: 1 MQAIQYALVLLCTMAVGSFHVPLPLSVISRSIVPCSARQHHLLLLSAERRGRGIEPEEPLFEGPILLPPADYTKPGRVVNLGDDDGAEVGHVMLNRKITLSFTCNVCDGHNTHQINRVSFMQGIVVLWCQHCNQKHLIADNLGKLDFPEFGRNLEEFMAKKGTPVKRVVMDRDGLSHVQVAVPGKDYPEVNPHQVTRDEDEEEALREGFDAMSLLPSAHVGGADYLRGVPXXXXXXXLRQEVGGAGDGEDVVDGEWEGDVVDGPPNV 267
BLAST of mRNA_E_fasciculatus_S2_contig753.15692.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G4_ECTSI) HSP 1 Score: 219 bits (559), Expect = 3.070e-68 Identity = 118/171 (69.01%), Postives = 122/171 (71.35%), Query Frame = 1
Query: 325 MLNRKITLSFTCNVCDGQESINRVSFMQGIVVLWCQHCNQKHLIADNLGKLDFPEFGRNLEEFMAKKGTPVRRVVMGRDGLSHVQVEVPGKDYPEVNPHLVTRDEDGEEVLREGFDGMSLLPGAHVGGAHYLPGVPPPP--LRQEVAGGGD--DIVEGDWEEDVVDGPPDV 825
MLNRKITLSFTCNVCDG N +LDFPEFGRNLEEFMAKKGTPV+RVVM GLSHVQV VPGKDYPEVNPHLVT DED EE L EGFD MSLLPGAHVGGA YLPGVPP LRQEV G GD D+V+GDWEEDVVDGPPDV
Sbjct: 1 MLNRKITLSFTCNVCDGH----------------------------NTHQLDFPEFGRNLEEFMAKKGTPVKRVVMDGHGLSHVQVPVPGKDYPEVNPHLVTGDEDEEEALHEGFDAMSLLPGAHVGGAGYLPGVPPXXXXLRQEVGGAGDGEDVVDGDWEEDVVDGPPDV 143
BLAST of mRNA_E_fasciculatus_S2_contig753.15692.1 vs.
Match: DNL-type (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLU7_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 2.100e-18 Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 1
Query: 340 ITLSFTCNVCDGQE--SINRVSFMQGIVVLWCQHCNQKHLIADNLGKLDFPEFGRNLEEFMAKKGTPVRRVVMGRDGLS 570
+TL+FTC CD + I+RV++ QGIV+ C C +HLIADN G LDFPEFGRN+E++M +G V+R+V+ G+S
Sbjct: 1 MTLAFTCKKCDTRNIYKISRVAYYQGIVICTCSGCQSRHLIADNKGLLDFPEFGRNIEDYMESQGESVQRLVLSNTGVS 79
BLAST of mRNA_E_fasciculatus_S2_contig753.15692.1 vs.
Match: Heat (shock protein, mitochondrial protein import, putative mitochondrial translocase complex subunit, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQE4_ECTSI) HSP 1 Score: 84.3 bits (207), Expect = 3.730e-14 Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 1
Query: 334 RKITLSFTCNVCDG--QESINRVSFMQGIVVLWCQHCNQKHLIADNLGKLDFPEFGRNLEEFMAKKGTP 534
R++ + FTCN+C+G Q IN+ ++ +GIV+ CQ C +HLIADNL KLDFP FG N+EE+M GTP
Sbjct: 547 RQLFMQFTCNLCEGVSQYMINKNAYEEGIVICTCQSCGARHLIADNLKKLDFPAFGNNIEEYMQSTGTP 615
BLAST of mRNA_E_fasciculatus_S2_contig753.15692.1 vs.
Match: Zim17 (protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J554_9EUKA) HSP 1 Score: 73.9 bits (180), Expect = 6.070e-12 Identity = 44/117 (37.61%), Postives = 66/117 (56.41%), Query Frame = 1
Query: 337 KITLSFTCNVCD--GQESINRVSFMQGIVVLWCQHCNQKHLIADNLGKLDFPEFGRNLEEFMAKKGTPVRRVVMGRDGLSHVQVEVPGKDYPEVNPHLVTRDEDGEEVLREGFDGMS 681
+ L FTCNVC+ SI+R ++ +G V++ C CN HLIAD+L ++ +F + LE++MAK+GTPVR +V G G+S DY E P ED + + +G+S
Sbjct: 59 RFQLRFTCNVCETPNAHSISRHAYTKGTVIVNCPGCNSTHLIADHLNWIE-DDF-KTLEQYMAKRGTPVRNLVTGGAGVSAAAQAATLLDYDEDEP------EDANQPVSRPIEGIS 167
BLAST of mRNA_E_fasciculatus_S2_contig753.15692.1 vs.
Match: Hypothetical (protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B2Z3_9EUKA) HSP 1 Score: 73.9 bits (180), Expect = 9.520e-12 Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 1
Query: 337 KITLSFTCNVCDGQE--SINRVSFMQGIVVLWCQHCNQKHLIADNLGKLDFPEFGRNLEEFMAKKGTPVRRVVMGRDGLS 570
+ L F CNVC+ + SI+R ++ +G V++ C CN HLIADNL ++ +F RNLEEFMAK+G+PV RVV G G++
Sbjct: 77 RFELQFVCNVCETKNTHSISRHAYNKGTVIVTCPGCNSTHLIADNLNWIE-DDF-RNLEEFMAKRGSPVTRVVTGGAGVT 154
BLAST of mRNA_E_fasciculatus_S2_contig753.15692.1 vs.
Match: Hypothetical (protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2E315_9EUKA) HSP 1 Score: 74.7 bits (182), Expect = 1.040e-11 Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 1
Query: 337 KITLSFTCNVCDG--QESINRVSFMQGIVVLWCQHCNQKHLIADNLGKLDFPEFGRNLEEFMAKKGTPVRRVVMGRDGLS 570
+ L FTCNVCDG SI+R ++ +G V++ C CN HLIADNL ++ +F NLEEFMAK+GTP R+V DG++
Sbjct: 124 RFRLQFTCNVCDGPNSHSISRHAYTKGTVIVQCPTCNATHLIADNLNWIE-DDFS-NLEEFMAKRGTPATRIV--NDGVA 199
BLAST of mRNA_E_fasciculatus_S2_contig753.15692.1 vs.
Match: DNL-type (domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWU7_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 3.930e-11 Identity = 37/88 (42.05%), Postives = 55/88 (62.50%), Query Frame = 1
Query: 232 EGPILLPPADYSKPGRVVNLGD--GDGAEVGHVMLNRKITLSFTCNVCDGQE--SINRVSFMQGIVVLWCQHCNQKHLIADNLGKLDF 483
EGP ++ P +S G N + G+ V +RK + +TCN+C+G+ ++RV+F +GIVV C+HC+ KHL+ADNL KLDF
Sbjct: 135 EGPSIIRPT-FSHRGSSANAAEVTTTGSSVAPSSPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNLSKLDF 221
BLAST of mRNA_E_fasciculatus_S2_contig753.15692.1 vs.
Match: Dnl-type (zinc finger n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U207_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 5.750e-10 Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 1
Query: 232 EGPILLPPADYSKPGRVVNLGD--GDGAEVGHVMLNRKITLSFTCNVCDGQE--SINRVSFMQGIVVLWCQHCNQKHLIADNLGKLDF 483
EGP ++ P +S G N G+ +RK + +TCN+C+G+ ++RV+F +GIVV C+HC+ KHL+ADNL KLDF
Sbjct: 150 EGPSIIRPT-FSHRGSSANAAGVTTTGSSAAPSPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNLSKLDF 236
BLAST of mRNA_E_fasciculatus_S2_contig753.15692.1 vs.
Match: CLUMA_CG009871, (isoform A n=1 Tax=Clunio marinus TaxID=568069 RepID=A0A1J1IA57_9DIPT) HSP 1 Score: 66.6 bits (161), Expect = 1.240e-9 Identity = 32/86 (37.21%), Postives = 54/86 (62.79%), Query Frame = 1
Query: 328 LNRKITLSFTCNVCDGQES--INRVSFMQGIVVLWCQHCNQKHLIADNLGKLDFPEFGRNLEEFMAKKGTPVRRVVMGRDGLSHVQ 579
L +K+ + +TC VC + S I++V++ QG+V++ C C HL+ADNLG F + N+E+ + +KG VR+V +G + + VQ
Sbjct: 68 LEKKMQMMYTCKVCGTRNSQTISKVAYTQGVVIVRCSGCENNHLVADNLGW--FKDKKVNIEDILREKGEEVRKVTLGNEIVEIVQ 151 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig753.15692.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig753.15692.1 >prot_E_fasciculatus_S2_contig753.15692.1 ID=prot_E_fasciculatus_S2_contig753.15692.1|Name=mRNA_E_fasciculatus_S2_contig753.15692.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=259bp MNAIQYALVLLCAMAVDSFHVPVPLSIGRNVVSCSAQHQLLHLLSAKGRGback to top mRNA from alignment at E_fasciculatus_S2_contig753:5138..9654- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig753.15692.1 ID=mRNA_E_fasciculatus_S2_contig753.15692.1|Name=mRNA_E_fasciculatus_S2_contig753.15692.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4517bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig753:5138..9654- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig753:5138..9654- >mRNA_E_fasciculatus_S2_contig753.15692.1 ID=mRNA_E_fasciculatus_S2_contig753.15692.1|Name=mRNA_E_fasciculatus_S2_contig753.15692.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=777bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig753:5138..9654- (Ectocarpus fasciculatus EfasUO2)back to top |