mRNA_E_fasciculatus_S2_contig7526.15689.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7526.15689.1
Unique NamemRNA_E_fasciculatus_S2_contig7526.15689.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7526.15689.1 vs.
Match: Nitrite (transporter NAR1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSE1_ECTSI)

HSP 1 Score: 389 bits (1000), Expect = 3.460e-123
Identity = 198/204 (97.06%), Postives = 202/204 (99.02%), Query Frame = 3
Query:    3 SANPGLQKLLFGLFGLPFGLFMVLVAGGELFTGNTALVTAALVEGKATFANLVKNWTCSWAGNLLGSVLLAKLVVAAGINAAPGTAAAIAVSKVASPFLQTFLKGVVCNWMVCMAVWVAAGASSLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLGLFSGASKSVSWQDMFVKNILPVTLGNIVGGALCQTMPYAAVYGSLLK 614
            SANPGLQKLLFGLFGLPFGLFMVLVAGGELFTGNTALVTAALVEGKAT ANLVKNWTCSWAGNLLGSVLLAKLVVAAGINAAPGTAAAIAVSKV+SPFL TFLKG+VCNWMVCMAVWVAAGA+SLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLGLFSGASKSVSWQD+FVKNILPVTLGNIVGGALCQTMPYAAVYGSLLK
Sbjct:  126 SANPGLQKLLFGLFGLPFGLFMVLVAGGELFTGNTALVTAALVEGKATVANLVKNWTCSWAGNLLGSVLLAKLVVAAGINAAPGTAAAIAVSKVSSPFLPTFLKGIVCNWMVCMAVWVAAGATSLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLGLFSGASKSVSWQDLFVKNILPVTLGNIVGGALCQTMPYAAVYGSLLK 329          
BLAST of mRNA_E_fasciculatus_S2_contig7526.15689.1 vs.
Match: Formate/nitrite (transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ31_9STRA)

HSP 1 Score: 284 bits (726), Expect = 1.410e-84
Identity = 140/206 (67.96%), Postives = 166/206 (80.58%), Query Frame = 3
Query:    3 SANPGLQKLLFGLFGLPFGLFMVLVAGGELFTGNTALVTAALVEGKATFANLVKNWTCSWAGNLLGSVLLAKLVVAAGINAAPGTAAAIAVSKVASPFLQTFLKGVVCNWMVCMAVWVAAGASSLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLGLFSGASKSVSWQDMFVKNILPVTLGNIVGGALCQTMPYAAVYGSLLK*R 620
            + NPGLQKL FG FGLPFGLFMVLVAGGELFTGN A+V+AA  EGKA+   L+K+W+ S+ GN +G++L+ KL+VAAG+   P  A  IAV+KVA PFL TFL+G+VCNWMVCMAVWVA+G S+L EKYLAM+LPVSAFVAFGAEHS+ANM L+PLG+  GA   V W D   KN+LPVTLGNIVGGALCQ  PY +VYG+L K R
Sbjct:   55 TLNPGLQKLFFGAFGLPFGLFMVLVAGGELFTGNVAMVSAAFFEGKASLEGLLKSWSISFIGNFIGTILVCKLIVAAGMLTVPAIATEIAVAKVAKPFLTTFLRGIVCNWMVCMAVWVASGCSTLGEKYLAMVLPVSAFVAFGAEHSIANMALIPLGMAGGAK--VKWIDFLTKNLLPVTLGNIVGGALCQAAPYGSVYGTLGKKR 258          
BLAST of mRNA_E_fasciculatus_S2_contig7526.15689.1 vs.
Match: Nitrite (transporter NAR1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4R6_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 7.010e-66
Identity = 113/202 (55.94%), Postives = 148/202 (73.27%), Query Frame = 3
Query:    3 SANPGLQKLLFGLFGLPFGLFMVLVAGGELFTGNTALVTAALVEGKATFANLVKNWTCSWAGNLLGSVLLAKLVVAAGINAAPGTAAAIAVSKVASPFLQTFLKGVVCNWMVCMAVWVAAGASSLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLGLFSGASKSVSWQDMFVKNILPVTLGNIVGGALCQTMPYAAVYGSL 608
            + NPGLQK++FG FGLPFGLFM +V GGELFTGNTA+VTAA++EGKA+   L+KNW  S+ GN +GS+LL  L V  G+   PG+A  IA +K +  F+Q F +G++CNW+VCMAVW++  AS    K+ A+ LP+SAFVA G +HSVANMFL+PLG+  GA   V+W    + N+LPVTLGNIVGGA+     Y+  +GSL
Sbjct:  140 ATNPGLQKIIFGAFGLPFGLFMTVVGGGELFTGNTAVVTAAVIEGKASIGGLLKNWVFSYLGNFVGSLLLVFLAVQGGVVVNPGSAMGIATAKTSLTFVQAFARGILCNWLVCMAVWMSVSASDAAGKFFAIFLPISAFVALGLDHSVANMFLIPLGMALGAG--VTWSQFLLANLLPVTLGNIVGGAVAVCGLYSGAFGSL 339          
BLAST of mRNA_E_fasciculatus_S2_contig7526.15689.1 vs.
Match: Putative (formate/nitrite transporter n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1B4P7_EMIHU)

HSP 1 Score: 233 bits (594), Expect = 1.460e-65
Identity = 122/202 (60.40%), Postives = 152/202 (75.25%), Query Frame = 3
Query:    3 SANPGLQKLLFGLFGLPFGLFMVLVAGGELFTGNTALVTAALVEGKATFANLVKNWTCSWAGNLLGSVLLAKLVVAAGINAAPGTAAA-IAVSKVASPFLQTFLKGVVCNWMVCMAVWVAAGASSLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLGLFSGASKSVSWQDMFVKNILPVTLGNIVGGALCQTMPYAAVYGS 605
             +NPGL KL+ G FGLPFGL M L++G ELFTGNTALVT AL+EGKAT A LVK+W  S+AGNL GS+LLA LV AAG+ A  G AAA +AV+K +  FL T LKGV+CNW+VCMAV++A+ A     K + +   +S+FVA G EHSVANMFL+PLG+ SGA   VSW+   +KN+LPVTLGNIVGGA+C    + +V+GS
Sbjct:   95 ESNPGLHKLVLGAFGLPFGLMMTLLSGAELFTGNTALVTMALIEGKATTAGLVKSWVSSYAGNLAGSLLLAGLVSAAGVLAGGGAAAAKVAVAKTSGAFLPTLLKGVLCNWLVCMAVYLASFAKDAAGKMVIIGFIISSFVAMGLEHSVANMFLIPLGILSGAD--VSWKAFLLKNLLPVTLGNIVGGAVCVGAAFCSVFGS 294          
BLAST of mRNA_E_fasciculatus_S2_contig7526.15689.1 vs.
Match: Hypothetical (protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5HVT6_9STRA)

HSP 1 Score: 233 bits (593), Expect = 6.570e-65
Identity = 110/201 (54.73%), Postives = 153/201 (76.12%), Query Frame = 3
Query:    3 SANPGLQKLLFGLFGLPFGLFMVLVAGGELFTGNTALVTAALVEGKATFANLVKNWTCSWAGNLLGSVLLAKLVVAAGINAAPGTAAAIAVSKVASPFLQTFLKGVVCNWMVCMAVWVAAGASSLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLGLFSGASKSVSWQDMFVKNILPVTLGNIVGGALCQTMPYAAVYGS 605
            S+NPGLQK++FG FGLPFGL M L+ GGELFTGNTALVTAA  EGK + ++L+KNW+ S+ GN +GS+LLA L    G   +   +AAIA +K + PFL  F++G++CNW+VCMAV++A+G S++  K +A+  P+SAFVA G +HS+ANMFL+PLG+  GA  +++   MF+KN++PVTLGNIVGGALC    + + +G+
Sbjct:  129 SSNPGLQKIIFGSFGLPFGLIMTLITGGELFTGNTALVTAAYAEGKTSMSDLIKNWSASYLGNFVGSLLLAYLAYTGGTLGSAPASAAIATAKCSMPFLTAFVRGILCNWLVCMAVYMASGISTMGGKMVAVYFPISAFVALGLDHSIANMFLIPLGMMRGAEVTIA--QMFMKNLIPVTLGNIVGGALCVAGGFGSAFGN 327          
BLAST of mRNA_E_fasciculatus_S2_contig7526.15689.1 vs.
Match: Hypothetical (protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GAY3_9STRA)

HSP 1 Score: 231 bits (588), Expect = 1.550e-64
Identity = 115/201 (57.21%), Postives = 148/201 (73.63%), Query Frame = 3
Query:    3 SANPGLQKLLFGLFGLPFGLFMVLVAGGELFTGNTALVTAALVEGKATFANLVKNWTCSWAGNLLGSVLLAKLVVAAGINAAPGTAAAIAVSKVASPFLQTFLKGVVCNWMVCMAVWVAAGASSLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLGLFSGASKSVSWQDMFVKNILPVTLGNIVGGALCQTMPYAAVYGS 605
            +ANPGLQK++FG FGLPFGL M LV G ELFTGNTALVTAA +EGK T  +L+K+W  S+ GN +GS+LLA L    G       AAAIA +K + PF   F++G++CNW+VCMAV +A+G SS+  K  A+  P+SAFVA G +HSVANMFL+PLG+  GA  +++  DMF+KN++PVTLGNIVGGA+C   PY   +GS
Sbjct:  106 AANPGLQKIIFGAFGLPFGLIMTLVTGAELFTGNTALVTAARMEGKITTKDLIKSWVSSYLGNFVGSLLLAYLAFNGGTLGNGPAAAAIATAKCSLPFKVAFIRGILCNWLVCMAVLMASGCSSMIGKMTAVWFPISAFVALGLDHSVANMFLIPLGMMRGAEITIA--DMFIKNLIPVTLGNIVGGAVCVMAPYGKTFGS 304          
BLAST of mRNA_E_fasciculatus_S2_contig7526.15689.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9B5G3_9STRA)

HSP 1 Score: 229 bits (583), Expect = 6.900e-64
Identity = 115/204 (56.37%), Postives = 147/204 (72.06%), Query Frame = 3
Query:    3 SANPGLQKLLFGLFGLPFGLFMVLVAGGELFTGNTALVTAALVEGKATFANLVKNWTCSWAGNLLGSVLLAKLVVAAGINAAPGTAAAIAVSKVASPFLQTFLKGVVCNWMVCMAVWVAAGASSLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLGLFSGASKSVSWQDMFVKNILPVTLGNIVGGALCQTMPYAAVYGSLLK 614
            SANPGLQK++ G FGLPFGL M LV GGELFTGNTALVTAA+ EGKAT  +L KNW  S+AGN +GS+LLA L   +G       A A+A +K + PF   F++G++CNW+VCMAV++A+G +SL  K  A+  P+SAFVA G +HSVANMF++PL +  GA  +V  +DMFVKN++PVTLGNIVGGA     P+   +G   K
Sbjct:  103 SANPGLQKIILGAFGLPFGLIMTLVTGGELFTGNTALVTAAVAEGKATKQDLAKNWIASYAGNFVGSLLLAYLAFKSGTLGDAPAAVAVATAKCSLPFDVAFVRGILCNWLVCMAVYMASGCTSLVGKMTAVWFPISAFVALGLDHSVANMFMIPLAILRGAEITV--KDMFVKNLIPVTLGNIVGGAFFVMAPFGTTFGKWFK 304          
BLAST of mRNA_E_fasciculatus_S2_contig7526.15689.1 vs.
Match: Formate/nitrite (transporter family member n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXN4_THAPS)

HSP 1 Score: 227 bits (579), Expect = 8.040e-64
Identity = 112/204 (54.90%), Postives = 148/204 (72.55%), Query Frame = 3
Query:    3 SANPGLQKLLFGLFGLPFGLFMVLVAGGELFTGNTALVTAALVEGKATFANLVKNWTCSWAGNLLGSVLLAKLVVAAGINAAPGTAAAIAVSKVASPFLQTFLKGVVCNWMVCMAVWVAAGASSLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLGLFSGASKSVSWQDMFVKNILPVTLGNIVGGALCQTMPYAAVYGSLLK 614
             ANPGLQK++FG FGLPFGL M LV G ELFTGNTALVTAA++EGK T  +L+KNW  S+AGN++GS++LA L   +G       + AIA +K + PF   F++G++CNW+VCMAV++A+G +SL  K +A+  P+SAFVA G +HSVANMF++PLG+  GA  +V   D   KN++PVTLGNIVGGALC    Y + +G   K
Sbjct:   66 EANPGLQKIIFGAFGLPFGLIMTLVTGAELFTGNTALVTAAVMEGKTTTKDLIKNWVASYAGNVVGSLILAYLAFKSGTLGNAPASVAIATAKCSLPFETAFVRGILCNWLVCMAVYMASGCASLAGKMVAVWFPISAFVALGLDHSVANMFIIPLGMMRGAQITVG--DFITKNLIPVTLGNIVGGALCVMGIYGSAFGKWFK 267          
BLAST of mRNA_E_fasciculatus_S2_contig7526.15689.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2DZW8_9STRA)

HSP 1 Score: 228 bits (581), Expect = 1.300e-63
Identity = 113/204 (55.39%), Postives = 148/204 (72.55%), Query Frame = 3
Query:    3 SANPGLQKLLFGLFGLPFGLFMVLVAGGELFTGNTALVTAALVEGKATFANLVKNWTCSWAGNLLGSVLLAKLVVAAGINAAPGTAAAIAVSKVASPFLQTFLKGVVCNWMVCMAVWVAAGASSLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLGLFSGASKSVSWQDMFVKNILPVTLGNIVGGALCQTMPYAAVYGSLLK 614
             +NPGLQK++ G FGLPFGL M LV+GGELFTGNTALVTAA+ EGKAT  +L KNW  S+ GN +GS+LLA L   +        A A+A +K + PF   F++G++CNW+VCMAV++A+G SS+  K  A+  P+SAFVA G +HSVANMF++PLG+  GA  +++  DMF KN++PVTLGNIVGGALC   P+   +GS  K
Sbjct:  102 QSNPGLQKIILGAFGLPFGLIMTLVSGGELFTGNTALVTAAVNEGKATKKDLAKNWIASYLGNFVGSLLLAFLAYKSQTLGTGPAAVAVATAKCSLPFEVAFVRGILCNWLVCMAVYMASGCSSMIGKMTAVWFPISAFVALGLDHSVANMFMIPLGIMRGAEITIA--DMFTKNLIPVTLGNIVGGALCVMAPFGTTFGSWFK 303          
BLAST of mRNA_E_fasciculatus_S2_contig7526.15689.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQ46_9STRA)

HSP 1 Score: 228 bits (580), Expect = 2.140e-63
Identity = 112/201 (55.72%), Postives = 151/201 (75.12%), Query Frame = 3
Query:    3 SANPGLQKLLFGLFGLPFGLFMVLVAGGELFTGNTALVTAALVEGKATFANLVKNWTCSWAGNLLGSVLLAKLVVAAGINAAPGTAAAIAVSKVASPFLQTFLKGVVCNWMVCMAVWVAAGASSLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLGLFSGASKSVSWQDMFVKNILPVTLGNIVGGALCQTMPYAAVYGS 605
            + NPGLQK++FG FGLPFGL M LV GGELFTGNTALVTAA  EGK +  +L+KNW  S+ GNL+GS+LLA L   +G  AA   +AAIA +K + P+   F++G++CNW+VCMAV++A+G +S+  K  A+  P+SAFVA G +HSVANMF++PLG+  GA  ++  +   +KN++PVTLGNIVGGALC   P+ +V+GS
Sbjct:  109 AENPGLQKIIFGSFGLPFGLIMTLVTGGELFTGNTALVTAAYKEGKISGKDLIKNWVSSYTGNLVGSLLLAYLAYKSGTLAASPASAAIATAKCSLPWDVAFVRGILCNWLVCMAVYMASGCASMAGKMTAVYFPISAFVALGLDHSVANMFIIPLGMLRGADITI--KAFLMKNLIPVTLGNIVGGALCVMAPFGSVFGS 307          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7526.15689.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Nitrite3.460e-12397.06transporter NAR1 n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
Formate/nitrite1.410e-8467.96transporter n=1 Tax=Tribonema minus TaxID=303371 R... [more]
Nitrite7.010e-6655.94transporter NAR1 n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
Putative1.460e-6560.40formate/nitrite transporter n=1 Tax=Emiliania huxl... [more]
Hypothetical6.570e-6554.73protein n=1 Tax=Corethron hystrix TaxID=216773 Rep... [more]
Hypothetical1.550e-6457.21protein n=2 Tax=Proboscia inermis TaxID=420281 Rep... [more]
Hypothetical6.900e-6456.37protein n=2 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Formate/nitrite8.040e-6454.90transporter family member n=1 Tax=Thalassiosira ps... [more]
Hypothetical1.300e-6355.39protein n=1 Tax=Helicotheca tamesis TaxID=374047 R... [more]
Uncharacterized2.140e-6355.72protein n=1 Tax=Pseudo-nitzschia multistriata TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7526contigE_fasciculatus_S2_contig7526:1619..6634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score345.9
Seed ortholog evalue1.2e-92
Seed eggNOG ortholog2880.D8LSE1
Preferred nameNAR1
Model size3257
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Formate/nitrite transporter
EggNOG OGs2QUGF@2759,COG2116@1
Cds size552
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7526.15689.1prot_E_fasciculatus_S2_contig7526.15689.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7526 4259..6569 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842414.21143-UTR-E_fasciculatus_S2_contig7526:1618..42581696842414.21143-UTR-E_fasciculatus_S2_contig7526:1618..4258Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7526 1619..4258 -
1696842414.2781212-UTR-E_fasciculatus_S2_contig7526:6569..66341696842414.2781212-UTR-E_fasciculatus_S2_contig7526:6569..6634Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7526 6570..6634 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842414.2235706-CDS-E_fasciculatus_S2_contig7526:4258..44321696842414.2235706-CDS-E_fasciculatus_S2_contig7526:4258..4432Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7526 4259..4432 -
1696842414.2329953-CDS-E_fasciculatus_S2_contig7526:5113..52081696842414.2329953-CDS-E_fasciculatus_S2_contig7526:5113..5208Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7526 5114..5208 -
1696842414.2432714-CDS-E_fasciculatus_S2_contig7526:5669..58661696842414.2432714-CDS-E_fasciculatus_S2_contig7526:5669..5866Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7526 5670..5866 -
1696842414.2663157-CDS-E_fasciculatus_S2_contig7526:6483..65691696842414.2663157-CDS-E_fasciculatus_S2_contig7526:6483..6569Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7526 6484..6569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7526.15689.1

>prot_E_fasciculatus_S2_contig7526.15689.1 ID=prot_E_fasciculatus_S2_contig7526.15689.1|Name=mRNA_E_fasciculatus_S2_contig7526.15689.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=184bp
MVLVAGGELFTGNTALVTAALVEGKATFANLVKNWTCSWAGNLLGSVLLA
KLVVAAGINAAPGTAAAIAVSKVASPFLQTFLKGVVCNWMVCMAVWVAAG
ASSLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLGLFSGASKSVSWQDM
FVKNILPVTLGNIVGGALCQTMPYAAVYGSLLK*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7526:1619..6634-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7526.15689.1 ID=mRNA_E_fasciculatus_S2_contig7526.15689.1|Name=mRNA_E_fasciculatus_S2_contig7526.15689.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5016bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7526:1619..6634- (Ectocarpus fasciculatus EfasUO2)
AGTCGGCTAACCCCGGGCTCCAGAAGTTATTGTTCGGTCTGTTCGGCCTC CCGTTCGGGCTGTTCATGGTCCTGGTCGCCGGAGGCGAGCTGTTCACCGG GAACACGGCGCTCGTCACTGCCGCCCTTGTAGAGGGAAAGGCCACCTTCG CGTGAGTTGTTGCTGTTGTTATTCTCGCTAGAGTGGTGGTGGTGGTGGTG GCGTGGTGATCCATATTATTGGTATTGGTAGCGGTGTTCGGTGTTGATGC AGCCTTGACGTTAGCACCGACCCGTCGTCCAGTGGTCTACAGCAGCACCA AGGCTCTTAGCTGCCGACGTGAGTGAGGAGGGGACCCTTTCTTCTTTTTT CGGCATGAAGAGAACTTCTTGCGATCGTGTGGTTTTTGGCAGAGAGGATA CTTTTAAGGTTAGATAGATACAGGTTCATCGGTCTTCTTCGCGAACGAAG TCCCAGCATACGTTCGAAAAAGCAGTGACCAGGCATTCGAAACGCAGCAT ACCTTCGTCACATGTAGTACGTTGTGCAGGGCAACAACGGCACGTGCAAG CCGAGAGAGCCGCCCTGAGTAGATGCTGGAGATGCCTACAGCGGTAGATG CACCTACGAGCTGCCCGGGCGAACAATGCTTCCCAATTGTTCTTCGCCCC CGAGACGCGAAGACTCCAGGGTGAAAGTACCAGCGGAAGAGGGAGGGAGG GTTGCTGAAAGAGCATTTTCTTGTCCGCCGTCGCCTTGTGCCTTATTTTC TGCTTGTTTTTTTTTCAGGAACTTGGTTAAGAACTGGACCTGCTCGTGGG CCGGCAACCTCTTGGGCTCCGTCCTGCTGGCGAAGCTCGTCGTTGCGGCG GGGATCAACGCCGCCCCCGGCACGGCGGCAGCCATCGCGGTGTCCAAGGT GGCCAGCCCGTTCCTGCAGACCTTCCTCAAGGGGGTGGTCTGCAACTGGA TGGTGTGCATGGCCGGTGAGGTGCCGTTCGTTGATGGTGCAAAAAGCGAG CGTGTTTATACGAGGGAAAGACAAAGTTGGGTCGTGTTAGTTTTTACGCT GCTGCTGCTGCTGCCGCCGCTGCTGCCATTCGGAGGTTTATTGCTTCCTA GAGGATGTAGAAAGAGGGACACAAGCAGACAGATCTAGAGACATAAAACG AACAGTCTGTGGGTTTGTTGTGCACGCGTTCCACGTGTTGTCTGCGGCTG TGACTATCGTTGCTGTTGACAACCAAATTGGGATCAGTAGACGACAATCC GAAGTTGCTGGCGTAGCCGCCGGTCACCCCCCCCCCCCATGCTCAAGCCT TGTCGCCAAGGGTTAAACAAAGCAGCCGCAGAACAAGAGCATGAAACCGC CAAGACGGCATACGCTCCCAACGAACTGACTCTCTCCGTCCCATGGATAT TTGGCCCAACGGAACGGAAATTGCAGTGTGGGTTGCGGCTGGGGCGAGTT CCCTCACGGAGAAGTACCTGGCGATGATTCTCCCGGTCTCGGCGTTCGTA GCCTTTGGGGCTGAGCACTCGGTAAGCGGTTGGTGTACATTATTGATAGT CCATTCATTTCGGTCCATCGCTTCGGTTTGTACTATTCGGTTTTTGGTTT GATGAAACGCAGTGTTGCTGCACGGCTGTGTGCTACATGTTGCTTTTATA ATTTTGCTTGGAAGAGGACGGGCCGGCCAGTGAGACCGCCTGTTTTGCCT CTTGTTTGTGGTGGATGTTGCTGTTGTATGTAGGTCACCAGTCATCACAC CTATTCTCCTAGACGTCATTCTGTCCACACATCGACACCCACGGAGTACG CGCTGCGGGTTTTGTAGGTGCACCCACCCACAAACACGTACCGTCATACT CGCCAGTACTGCTGGCGGTTTGTAGATTCACACGCGGGTTTGGATAGACC GAACTCAGCCAATTGTCCTCATCTTGATTGCGTACGCATGTCTTTGCTTC GTCTGGCATCCTCGCCGTATGGTTGATCAGAAGCAAGGCACCAAGAAGAC GACGAGGCGTCGACAGCAGAAGGCGAAAAAATGAACACAATGAAGAAAAA TAAATACGAAATGTAGAAAACTACTGCATACCGCCAAAACGACGGCTCCA CAACGTACAGCCGAAGCTTTCTACCTCCCCCAACTTTTCTTTTTTTGTCG ACCGGACTTGATTTCTTCTCCACGACCCGGGATGCGCCCTCCACGCGTCC AGGTTGCCAACATGTTCCTGCTCCCTCTGGGCTTGTTCAGCGGGGCGTCG AAGAGCGTGTCCTGGCAAGACATGTTCGTCAAGAACATCTTGCCCGTCAC GCTCGGCAACATCGTCGGCGGGGCGCTGTGCCAAACGATGCCTTACGCTG CCGTGTACGGGTCGCTACTCAAGTAGCGGACGTTAGCGCTAGCGGGAGGT GGTATTAGTCGTGGGTCGTTACGTATTGCGTAAATAACAGCTCGTTCGTG CCTTCCGTGCACGACAAAACGAATCGTTCGTGCACCGTCAGTGGTATCCA AACGGGGCGTTTCTTGCTATCTATCCCCCTCTCACCTGTTGTTGATCTTG TTATTTTCCCTTCTTGGTGGTTTTTCGATAATTTTTTTCTTGTTCTTGTT TCTTGATGTACTCTGCCTGCATTCCGACAACGACACCTACGATGTAGAAC CCGTTTCCGGGAAGAGAACGGATGGTTTCTGCAGCGCAAGGTGTTTAGTT TGTTGTCCCATTTTTGTTTTGTCTCTCGAATCGTTTGGCTTTCCTCAGCT GCTGCAGCACCAACACGCGTAGCGGGACAACTTTAACATTTTTCTCAGCT TACCTACGAGTCCATCAAGCCCCCACTTTACTTTTTTGTTTTGCTGAAAT GGCGATGGCAGTTGTGATGGCTTGAGCGCGGACACGGTGGAACCCGCCAG GCGGAATCGATTTGCATCATGTCTTGCCATGCCACGCCTCCGAGGGTACG GCTGGCTGACTGGTTATTACCTACGTCGACTGCAACCACGGCAGTATGCA TACTATGCCCCACTCTTGTCAAGCGGGTGGTGGAGACATTCTTCTGTGGC GTTTCAGTCTGCAGCGTTTTGTGTGTGCGGCTTTCTCTCTTTCCCAAGAG CTTTCGCGTGTGCTGCGGCACGTGTGTCTTTTTGCTTAACGCTGGCGAGG GTGATGCAACAACGCGTTCCGCCCATGATTGTTTTGCTGCCGGAACCCCT CTACGGTTTGATTTCTTCGAACCGGGGGAGATAAAGGCCGTACCGTAGAC TCCCATGGAAAAGGTCTCATCGTGATCTTGAGCGCGGCCTGCCCCCGTTT CTGGATTGGGTTGTCAGCCAGGAAAGATAAGTCATCCTGACATGGGTTTT GGCAATATCACCCTTACCTTGTCGTAGCACGTGCACGAGACCTCCTGTTT TTTATTTGTCTCCGTCCGGGGTGATGATGTCAGTCGGAGAAGCGGGGAAG GTGGGGATCGTTCGCCCCCCCCTTCCGTAGCCACTGCTGTCGCCGCTGGT CCTGCGCAGAGATCATGGGCGTCTGTCATCGATCGAAAGCGCACCTCTGT GCTGGCCCCTTTCTTTGTTTTGTTGTGTTTTTGTTGTTCCTTTTGGCGGG TGGGCAAGGGGTGACTTTGGCTTCACTCTCCACGCTCAATTCCGTGCGAG CGGGCGTATGCACGTACTGTGTTGGGAGCCCTCTTAATCGGTCTGGTAAG CACAGGTTACTCCTGTACCTGTCACGCGCCTCGCCACCCCCTTTATGTCC TAGTTTGGTTGGGCTTTTCCAGTGAAGAGATGCCTCACCATTTGTTACAG TGTTTCTCAAGCTTGTCGTTCCCCAGTACCGTGCCGGGGATGTCACAGAG AGAGAGGGGTCTTTTCCACGAGTTTTTACTAGAGGGGGGGGGGGTATTGG TGTGGGGGCAAGGTAGCTCTTCTGCGTGACATAGTGTCCTTGTGGGAGCT CGATAAAAGAAGGGTGCCTTTCGTGGGAGGGGCGGGTCGTTGGTGTCCAC CGGTCGGTCTATCATGTATTATGCTGGAGAAGGGGGTGGAGGTGCCAACT CGTGTGTGTGGGTGTGTGCCCACTGCATTTTGCTATACATGACCCAAGCT TTGGTTCTCGTATGGTGGCGGCGTGTCCGTCGTTTTTCTGTTTCCTTCTT CCGTATATACATTCCGTTCTTTGGCCGCTGACTGGCGACATCGATCTCGG CGTCGTGTGTGGGCAGGGGGGGCAAAGATTCACCATTGAGTCATTCTGAC ATATTTTTGGGCTTGGCTGTTTCGGGTATTTTGCCTACGACGGAATAATA TAGTAGCACACAGAACAGAAACAAACGAACGTGGAGTAGCCAGAGGAAGG TGTCCTTGGACCTACCTAAAATCAATGCGAGAGAATTCTTGTGGGTAAAT GGTTTCTTCGTTCCTGACTTTCTTTTTTTGTGTCTCGCTCGGGGGTGCGA CATCACCACCAACACCGACCGGTGGTAAGAAAGCTGCTCGGTACAATACG TACGTACGTACGTACGTACGTGCGGTATCATCATCGATGATCCCCGTGAC GACAATCGAATAATTTTAGTAATTTCGACTCAACAACATCATCAAGCGTT CATCATCGCATGTGGGAAACGTACGTGCGATACGTATACGGCCAGTCAGT ACTATACTGCTGTGAGTGAGTGTGATTACTACACTGCTGTACGTACTGAC CTGTGACATACGTGTCAGATGGCCTTGTCTCTGGTTGCGTTGTGAAGTGC CAAGATTGAACCAAGGGGGTGTACCTACCTCGTTCTCTCTGGCCCGTGCG TGATGCTGACTCCTAGTCTCAGTTGTTACCTCGCATACCATGCAGAGGGA GGAGCGGAGGACTCCAGAATAATAATATCTGTCGTTGATTTTTTTTACTG AACTTGCGGACCCCTCGGGGCCAGTTAATTAGTGTACCTTTTTGGGTGAG TTAGCCTGTGACCACGGGAATCGACCGCGTCAATCAATCAAGTGTTGTTG GTTTATTTAGTCTAGT
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7526:1619..6634-

>mRNA_E_fasciculatus_S2_contig7526.15689.1 ID=mRNA_E_fasciculatus_S2_contig7526.15689.1|Name=mRNA_E_fasciculatus_S2_contig7526.15689.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=552bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7526:1619..6634- (Ectocarpus fasciculatus EfasUO2)
ATGGTCCTGGTCGCCGGAGGCGAGCTGTTCACCGGGAACACGGCGCTCGT
CACTGCCGCCCTTGTAGAGGGAAAGGCCACCTTCGCGAACTTGGTTAAGA
ACTGGACCTGCTCGTGGGCCGGCAACCTCTTGGGCTCCGTCCTGCTGGCG
AAGCTCGTCGTTGCGGCGGGGATCAACGCCGCCCCCGGCACGGCGGCAGC
CATCGCGGTGTCCAAGGTGGCCAGCCCGTTCCTGCAGACCTTCCTCAAGG
GGGTGGTCTGCAACTGGATGGTGTGCATGGCCGTGTGGGTTGCGGCTGGG
GCGAGTTCCCTCACGGAGAAGTACCTGGCGATGATTCTCCCGGTCTCGGC
GTTCGTAGCCTTTGGGGCTGAGCACTCGGTTGCCAACATGTTCCTGCTCC
CTCTGGGCTTGTTCAGCGGGGCGTCGAAGAGCGTGTCCTGGCAAGACATG
TTCGTCAAGAACATCTTGCCCGTCACGCTCGGCAACATCGTCGGCGGGGC
GCTGTGCCAAACGATGCCTTACGCTGCCGTGTACGGGTCGCTACTCAAGT
AG
back to top