mRNA_E_fasciculatus_S2_contig7525.15688.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7525.15688.1 vs.
Match: Complex1_LYR_dom (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB99_9PHAE) HSP 1 Score: 301 bits (772), Expect = 2.230e-101 Identity = 178/216 (82.41%), Postives = 182/216 (84.26%), Query Frame = 2
Query: 86 MLCCSKRIKPGCGGRMLRDAREAFREGCQANNARPMAAPFRSASTIQQCAAASGTESTLAGWSCVDPWTGRP----SSSXXXXXXXXXXXXXGKVGG------------ALGLKEFMHRARVLDLYRGILKRARALEDKDVADEARRQFKSSLGETDPLKVQMMVADATNHLEAMQGSTRGAGSGAAGGGGGDSWLDIHDPEDKRGRVGEGFPWQR 685
MLCC+KRIKPGCGGRMLRD+ EAFREG NARP APFRSAST+QQCAAA GTEST A WSCVDPWTGRP SSSXXXXXXXXXXXXX G ALGLKEFMHRARVL+LYRGILKRARALEDKDVADEARRQFKS LGETDPLKVQMMVADATNHLEAMQGSTRGAGSG G GGGDSWLDIHDPEDKRGRVGEGFPWQR
Sbjct: 1 MLCCTKRIKPGCGGRMLRDSTEAFREGSHTKNARPRVAPFRSASTMQQCAAACGTESTAAVWSCVDPWTGRPRPRSSSSXXXXXXXXXXXXXXXXXGSXXXXXXXXXXXALGLKEFMHRARVLELYRGILKRARALEDKDVADEARRQFKSCLGETDPLKVQMMVADATNHLEAMQGSTRGAGSG--GRGGGDSWLDIHDPEDKRGRVGEGFPWQR 214
BLAST of mRNA_E_fasciculatus_S2_contig7525.15688.1 vs.
Match: Complex1_LYR_dom (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC8_ECTSI) HSP 1 Score: 177 bits (449), Expect = 5.840e-54 Identity = 91/100 (91.00%), Postives = 95/100 (95.00%), Query Frame = 2
Query: 386 MHRARVLDLYRGILKRARALEDKDVADEARRQFKSSLGETDPLKVQMMVADATNHLEAMQGSTRGAGSGAAGGGGGDSWLDIHDPEDKRGRVGEGFPWQR 685
MHRARVL+LYRGILKRARALEDKDVADEAR+QFKS LGETDPLKVQMMVADATNHLEAMQGSTRGAGSG GGGG SWLDIHDPEDKRGRVG+GFPWQ+
Sbjct: 1 MHRARVLELYRGILKRARALEDKDVADEARKQFKSCLGETDPLKVQMMVADATNHLEAMQGSTRGAGSG--GGGGDHSWLDIHDPEDKRGRVGKGFPWQQ 98
BLAST of mRNA_E_fasciculatus_S2_contig7525.15688.1 vs.
Match: Complex1_LYR_dom (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQF9_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 3.100e-19 Identity = 48/108 (44.44%), Postives = 72/108 (66.67%), Query Frame = 2
Query: 374 LKEFMHRARVLDLYRGILKRARALEDK----DVADEARRQFKSSLGETDPLKVQMMVADATNHLEAMQGSTRGAGSGAAGGGGGDSWLDIHDPEDKRGRVGEGFPWQR 685
LK+F+ + +VL YR +LK ARA+ED+ +VA + R ++++ ETD LK++M++A+A H++ +QG+ G SWLD+ DPED+RGRVG GFPWQR
Sbjct: 31 LKDFVRKRQVLHSYRQLLKCARAMEDRPSGQEVAAQVRERYRAYAHETDSLKLRMLLAEAAQHIDTLQGTVARTSPDMPPPPG--SWLDVDDPEDRRGRVGVGFPWQR 136
BLAST of mRNA_E_fasciculatus_S2_contig7525.15688.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K2A3_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 7.700e-10 Identity = 44/109 (40.37%), Postives = 55/109 (50.46%), Query Frame = 2
Query: 374 LKEFMHRARVLDLYRGILKRARALEDKD-----VADEARRQFKSSLGETDPLKVQMMVADATNHLEAMQGSTRGAGSGAAGGGG-GDSWLDIHDPEDKRGRVGEGFPWQ 682
LKEFMHR+RV+ YR L+ R + + D VA E R F+ ETD L V M V D L +Q G DSWL+I D D+RGRVG +PW+
Sbjct: 35 LKEFMHRSRVIKQYRSYLRAIRCIPEDDAWREQVAREIRDSFRLKATETDKLSVTMAVTDGDRKLVQLQSMVGYQQKNDVNDSGDNDSWLNIVDEGDQRGRVGMQWPWE 143
BLAST of mRNA_E_fasciculatus_S2_contig7525.15688.1 vs.
Match: LYR (motif-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDI4_9ARCH) HSP 1 Score: 63.9 bits (154), Expect = 1.330e-9 Identity = 38/121 (31.40%), Postives = 63/121 (52.07%), Query Frame = 2
Query: 356 VGGALGLKEFMHRARVLDLYRGILKRARALED----KDVADEARRQFKSSLGETDPLKVQMMVADATNHLEAMQG---------STRGAGSGAAGGGGGDSWLDIHDPEDKRGRVGEGFPW 679
+G L L+ F+ R +VL LYR +++ A + D +D+ + R F+ + D L ++ ++ + ++L+ +QG S R GS W++ DP DKRGRVGEG+PW
Sbjct: 6 LGETLPLRFFIRRKQVLSLYRNLIRNATRVHDESVQRDIISQIRTDFRRNAHVQDSLVIKSLIQEGNSNLKILQGMAYKDSKAHSIRAQGS----------WIEQEDPVDKRGRVGEGWPW 116
BLAST of mRNA_E_fasciculatus_S2_contig7525.15688.1 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JFV4_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 2.960e-8 Identity = 44/123 (35.77%), Postives = 61/123 (49.59%), Query Frame = 2
Query: 350 GKVGGALG----LKEFMHRARVLDLYRGILKRARALEDK----DVADEARRQFKSSLGETDPLKVQMMVADA---TNHLEAMQGSTRGAGSGAAGGGGGDSWLDIHDPEDKRGRVGEGFPWQR 685
GK+ LG LKEF+H+ V+ YR L+ + D+ DE RR F+ TD + + M VAD N + +M G + + DSWL+I D EDKRGRVG +PW +
Sbjct: 49 GKIKSRLGNLPSLKEFVHKTAVVRQYRDFLRAVVMIPDETFRQSALDEVRRTFRQHSFMTDKIAIDMEVADGGRRLNQVRSMVGYVDPRSNDDS-----DSWLNIDDKEDKRGRVGVEWPWDQ 166
BLAST of mRNA_E_fasciculatus_S2_contig7525.15688.1 vs.
Match: LYR (motif-containing protein 2 n=2 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C3AAP9_CYCLU) HSP 1 Score: 58.5 bits (140), Expect = 1.390e-7 Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 2
Query: 365 ALGLKEFMHRARVLDLYRGILKRARALED----KDVADEARRQFKSSLGETDPLKVQMMVADATNHLEAMQGSTRGAGS 589
AL LK+F+ R RVL +YR +++ R + D K ++D AR +FK + TD ++MM+ A NHLE +QGS AGS
Sbjct: 41 ALSLKQFLQRQRVLGIYRNMIRTIRKVPDEADRKYLSDWARDEFKRNKSATDQDAIRMMITQANNHLEELQGSLALAGS 119
BLAST of mRNA_E_fasciculatus_S2_contig7525.15688.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XK87_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 1.550e-7 Identity = 40/111 (36.04%), Postives = 53/111 (47.75%), Query Frame = 2
Query: 374 LKEFMHRARVLDLYRGILKRARALEDK----DVADEARRQFKSSLGETDPLKVQMMVADATNHLE---AMQGSTRGAGSGAAGGGGGDSWLDIHDPEDKRGRVGEGFPWQR 685
LKEF+HR V+ YR L+ + D E R F+ + ETD + ++M VAD L+ +M G DSWL+I D ED RGRVG +PW R
Sbjct: 49 LKEFLHRTTVVRQYRAFLRAVAVIPDTPWRIQAQTEVRTTFRRNATETDRMALKMTVADGARRLQQVRSMVGYKNPQTESDE-----DSWLNIKDEEDPRGRVGVQWPWSR 154
BLAST of mRNA_E_fasciculatus_S2_contig7525.15688.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z286_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 1.180e-6 Identity = 39/108 (36.11%), Postives = 53/108 (49.07%), Query Frame = 2
Query: 374 LKEFMHRARVLDLYRGILKRARALEDKDVADEARRQFKSSLG----ETDPLKVQMMVADATNHLEAMQGSTRGAGSGAAGGGGGDSWLDIHDPEDKRGRVGEGFPWQR 685
+KEF+HR V YR LK + EA R+ KS+ ET+P+ ++M V D L +Q S DSWL+I D D+RGRVG +PW+R
Sbjct: 72 MKEFLHRQTVTHQYRSFLKAVKLFPKGTEQAEAFREVKSAFRVCSRETNPISIRMAVTDGQRKLAQVQSLVGYQPSNNDE----DSWLNIKDDLDQRGRVGVQWPWER 175
BLAST of mRNA_E_fasciculatus_S2_contig7525.15688.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V411_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 7.440e-6 Identity = 35/116 (30.17%), Postives = 56/116 (48.28%), Query Frame = 2
Query: 374 LKEFMHRARVLDLYRGILKRARALEDKDVADEARRQFKSSLG---------ETDPLKVQMMVADATN---HLEAMQGSTRGAGSGAAGGGGGDSWLDIHDPEDKRGRVGEGFPWQR 685
LKEF+HR +V+ YRG + + ++D+ + + + K S E + L + M + + L++M G G DSWL+I D ED RGR+G +PWQ+
Sbjct: 89 LKEFVHRQKVIRQYRGFFRVLKYIDDEQHKVQMKNEIKQSYSILKNANNAIEEEKLAISMSLTEGERKLKELKSMVGYVDGKEKSDP-----DSWLNIKDKEDPRGRIGSSWPWQK 199 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7525.15688.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7525.15688.1 >prot_E_fasciculatus_S2_contig7525.15688.1 ID=prot_E_fasciculatus_S2_contig7525.15688.1|Name=mRNA_E_fasciculatus_S2_contig7525.15688.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=201bp MLCCSKRIKPGCGGRMLRDAREAFREGCQANNARPMAAPFRSASTIQQCAback to top mRNA from alignment at E_fasciculatus_S2_contig7525:4110..7048+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7525.15688.1 ID=mRNA_E_fasciculatus_S2_contig7525.15688.1|Name=mRNA_E_fasciculatus_S2_contig7525.15688.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2939bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7525:4110..7048+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7525:4110..7048+ >mRNA_E_fasciculatus_S2_contig7525.15688.1 ID=mRNA_E_fasciculatus_S2_contig7525.15688.1|Name=mRNA_E_fasciculatus_S2_contig7525.15688.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=603bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7525:4110..7048+ (Ectocarpus fasciculatus EfasUO2)back to top |