mRNA_E_fasciculatus_S2_contig7525.15687.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7525.15687.1
Unique NamemRNA_E_fasciculatus_S2_contig7525.15687.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7525.15687.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC9_ECTSI)

HSP 1 Score: 408 bits (1049), Expect = 7.690e-142
Identity = 234/263 (88.97%), Postives = 237/263 (90.11%), Query Frame = 1 
Query:   76 MEYERALFRVYDKSMEGFHSRGVRSACNLLQKLFLVASAGLFAALVLLHHQFVNKPGCLAPLLEEAARREGVLILPTVRSVTANVTLGEIDTDPEGVIVGGPGQVAGXXXXXXXXXXXXXXXXE-RHPSKIQLPSGNWVPYDVMDEAVAAAAGGXXXXXXGEASSNDTAVVDAGGAENGANVSAVNDTGFTADYTFAFEPIVLLLPDKIQEGHDFKWVNFTMEPSVCLREAGFMSRLLAATVIGYDEIMVNMFMYSMKSKGLL 861
            MEYERALFRVYDKSMEGFHSRGVRSACNLLQKL LVASAGLFAAL LLHHQFVNKPGCLAPLLEEAA REGVLILPTVRSVTAN TLGEIDTDPEGVIVGGP Q   XXXXXXXXXXXXXXXX  RHPSKIQLPSGNWVPYDVMDEA A +A G      GEASSNDTAVVD    E G NVSAVNDTGFTADYTFAFEPIVLLLPDKIQEGH FKWVNFTMEPSVCLREAGF+SRLLAATVIGYDEIMVNMFMYSM+SKGLL
Sbjct:    1 MEYERALFRVYDKSMEGFHSRGVRSACNLLQKLVLVASAGLFAALFLLHHQFVNKPGCLAPLLEEAASREGVLILPTVRSVTANTTLGEIDTDPEGVIVGGPNQAGXXXXXXXXXXXXXXXXXXXRHPSKIQLPSGNWVPYDVMDEAAAGSAEGGEGG--GEASSNDTAVVDGXXGEIGVNVSAVNDTGFTADYTFAFEPIVLLLPDKIQEGHGFKWVNFTMEPSVCLREAGFVSRLLAATVIGYDEIMVNMFMYSMRSKGLL 261
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BLAST of mRNA_E_fasciculatus_S2_contig7525.15687.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH19_9PHAE)

HSP 1 Score: 360 bits (924), Expect = 3.260e-116
Identity = 228/378 (60.32%), Postives = 236/378 (62.43%), Query Frame = 1 
Query:   76 MEYERALFRVYDKSMEGFHSRGVRSACNLLQKLFLVASAGLFAALVLLHHQFVNKPGCLAPLLEEAARREGVLILPTVRSVTANVTLGEIDTDPEGVIVGGPGQVAGXXXXXXXXXXXXXXXX---------------ERHPSKIQLPSGNWVPYDVM-----------------------------------------------------------------------------------------------------DEAVAAAAGGXXXXXXGEASSNDTAVVDAGGAENGANVSAVNDTGFTADYTFAFEPIVLLLPDKIQEGHDFKWVNFTMEPSVCLREAGFMSRLLAATVIGYDEIMVNMFMYSMKSKGLL 861
            MEYERALFRVYDKSMEGFHSR VRSACNLLQKLFLVASAGLFAALVLLHHQFVNKPGCLAPLLEEAA REGVLILPTVRS+TAN TLGEIDTDPEGVIVGGP Q  GXXXXXXXXXXXX  XX               +RHPSKIQLPSGNW+PYDVM                                                                                                      +  AA  G       G+ASSNDTAV+ AGG E G NVSAVNDT FTADYTFAFEPIVLLLPDKIQEGH FKWVNFTMEPSVCLREAGF+SRLLAATVIGYDEIMVNMFMYSM+SKGLL
Sbjct:    1 MEYERALFRVYDKSMEGFHSREVRSACNLLQKLFLVASAGLFAALVLLHHQFVNKPGCLAPLLEEAASREGVLILPTVRSITANTTLGEIDTDPEGVIVGGPNQAGGXXXXXXXXXXXXGGXXXXXXXXXXXXXXXXXDRHPSKIQLPSGNWMPYDVMVGVSIGNGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRTADAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGGGQDEAAVEGAEGSEGGGQASSNDTAVIGAGGGEIGMNVSAVNDTEFTADYTFAFEPIVLLLPDKIQEGHGFKWVNFTMEPSVCLREAGFVSRLLAATVIGYDEIMVNMFMYSMRSKGLL 378
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7525.15687.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized7.690e-14288.97protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.260e-11660.32protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7525contigE_fasciculatus_S2_contig7525:124..3973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size862
Hectar predicted targeting categorysignal anchor
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_003000.1
Cds size861
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842414.0247288-CDS-E_fasciculatus_S2_contig7525:123..2611696842414.0247288-CDS-E_fasciculatus_S2_contig7525:123..261Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7525 124..261 -
1696842414.0363488-CDS-E_fasciculatus_S2_contig7525:1116..12011696842414.0363488-CDS-E_fasciculatus_S2_contig7525:1116..1201Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7525 1117..1201 -
1696842414.0499709-CDS-E_fasciculatus_S2_contig7525:1679..18131696842414.0499709-CDS-E_fasciculatus_S2_contig7525:1679..1813Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7525 1680..1813 -
1696842414.061892-CDS-E_fasciculatus_S2_contig7525:1966..22261696842414.061892-CDS-E_fasciculatus_S2_contig7525:1966..2226Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7525 1967..2226 -
1696842414.0709474-CDS-E_fasciculatus_S2_contig7525:3729..39731696842414.0709474-CDS-E_fasciculatus_S2_contig7525:3729..3973Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7525 3730..3973 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7525.15687.1prot_E_fasciculatus_S2_contig7525.15687.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7525 124..3973 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7525.15687.1

>prot_E_fasciculatus_S2_contig7525.15687.1 ID=prot_E_fasciculatus_S2_contig7525.15687.1|Name=mRNA_E_fasciculatus_S2_contig7525.15687.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=287bp
EGRRLAGRTAHGTERDRGHSPSGGAMEYERALFRVYDKSMEGFHSRGVRS
ACNLLQKLFLVASAGLFAALVLLHHQFVNKPGCLAPLLEEAARREGVLIL
PTVRSVTANVTLGEIDTDPEGVIVGGPGQVAGGGGGDDADDDEEEEEDER
HPSKIQLPSGNWVPYDVMDEAVAAAAGGAEGSEGGEASSNDTAVVDAGGA
ENGANVSAVNDTGFTADYTFAFEPIVLLLPDKIQEGHDFKWVNFTMEPSV
CLREAGFMSRLLAATVIGYDEIMVNMFMYSMKSKGLL
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mRNA from alignment at E_fasciculatus_S2_contig7525:124..3973-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7525.15687.1 ID=mRNA_E_fasciculatus_S2_contig7525.15687.1|Name=mRNA_E_fasciculatus_S2_contig7525.15687.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3850bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7525:124..3973- (Ectocarpus fasciculatus EfasUO2)
GAGGGTAGACGACTAGCAGGGCGGACGGCGCATGGGACAGAGAGAGACAG
AGGCCACTCCCCCTCCGGCGGAGCCATGGAGTACGAGAGGGCGCTCTTCC
GCGTGTACGACAAGTCGATGGAAGGCTTCCACTCTCGAGGCGTGAGGAGC
GCGTGCAACCTGCTGCAGAAGTTGTTCTTGGTCGCATCGGCCGGCCTTTT
CGCCGCACTCGTCCTCTTGCACCACCAGTTCGTCAACAAGCCAGGTATGC
ACGGATACGTGTTTCGTCCACAGGGGAGCGCAACGGCGGCTTATGTAGGG
GCGAGGTCTCGATGGTATTTCGCCGCGTTTGGGTGGGACGTCCCAGGCTG
TGCCGGGAGTCCTACTACAAACAATATTACGCCGGCGGATGCGGTACCGT
CGATGAAATTGCCGTGCCTTGCCGTAGCTGCTGGTGCGGTACTGTAGCTC
GCTGTGTACTTATGGGGCGTGGGTTGTCCTATGAAATAATTATACGCCCT
TGATTTCTGTGACCTATACAAGCGGGTGTAGCGTCGTATCGCATGCGTCG
GCTGAATACTGCCATATATTTACATAGTTCCACCGCCTGGTCAAGATTGC
GCGATTGACCTGTAACCGTGCTTTCTAGTGCTTTCCCGACTGCTTTCTCT
TCGTTTACGGGTAACGGCGGAGAGATTCATCTTCGTTTACACTACAGTAT
ACCAGGCACGCACGCATATGCGTACCTACATGAATCGGTCATCAGCCCTC
CGAACAATGCTAACATACTCAAGGGGCGTCCTTTTTGTATGTATTGCGTA
AATGCTGTGTTTGGTGGTTCGCGGACCGGTTATCTTTACAACCATCGGCC
TGCTGGCTGAGCGGGAACCCCCCGTTGAATTCATGCACTACACTACTACA
ATATGCACACCAGAGGGTACTGGATACGTCCTTTATGGTGATCAAGGTCA
TGGGTTCTTTGCGGACATGGCACGTTCGGACTTCGCTTGCTCGAGAGTAT
TCAAAGCAACGCAAGAGTACCATATAGTTGCGGGAGAACGAGGGATGCCG
AAAACCTGTCGCGAAGGAAGGAATGGGAGAGACAGACAGGGAGAGAGAGA
GGGGGGGGGGGGGGGGGAGCGAGCGCTACAAGGTGCTGTGGATGTTGTCG
TCCCGTTGGTTCTGGAGGTCGGTGTTATTCCTCTGGGTGCATACACTTGG
GACGTACCAGCCAGGCCCACACAAGGTTTGTTACACAAGAGTTGGGAGAT
GATTCCAGAATTTCTAGAATTTGGGGAGTAGGCTCGACGAAACGACTACA
AGTATAGTAGTTGATGGAGACAGCGGCGGCTACATCTGCAACGGAAAAAG
TGCCAGCTTTATGAGCGGGCATGGTAGACGGAGGCTGCGCGTAGACGGAG
GCTTTGCGCAGAATCCATGTCCCGAATTTACCCAAATTGCAGCAAAAGTT
GCTTTTCAATGAGTCAACAATGGTCGGCATGATTTGATGCTCAACTGATG
AAGCCCTCTTTCTTTCAACGGTTACGGTTTCCACGAGCAGCTGTCAGAGC
TGTACATTGCCGGCGTCCCTGGCCATGTTGAAGGAGCAACGGGGTTCTCA
GGCACCGACGCAACAACGCTCGGCTGTCCAACCGCGAAATGACCCCTCGG
TCCCCCCGCCTACCCGCCGATGCTAACTGTTTCCATTTGCGCCCGCGTTC
TATGTTCCCACTCAATTACCATCACCGCACCCGGCATCAAAACCCAGGCT
GCCTGGCGCCGTTGCTCGAAGAAGCGGCGCGAAGAGAAGGAGTGCTCATC
CTGCCCACCGTCCGATCAGTCACCGCCAATGTCACGCTAGGCGAGATCGA
CACAGACCCGGAGGGCGTGATCGTTGGCGGCCCAGGCCAGGTGGCGGGGG
GGGGCGGCGGCGACGACGCGGACGACGACGAGGAGGAGGAAGAAGACGAG
CGACACCCCAGCAAGATACAGCTCCCGTCGGGGAACTGGGTACCCTACGA
CGTCATGGTGGGGGTTTCTATCGGCGGTGGAGGCGGTAGCTCTCGCGGGA
GGCGGCGGTGGTGGGGGCTCCGCGGCGCGGCGAACGACGGAGGGGGGGGT
GAGGCGGAGGGGGGCGGGAACAGCAGGAGAACGGCCGACGCGGAAGGGGG
AGGGGGGGAGGACGAGGCAGTGGCGGCGGCGGCGGGGGGTGCGGAGGGGA
GTGAGGGTGGAGAGGCGAGCAGCAATGACACCGCTGTTGTGGATGCTGGG
GGGGCCGAGAACGGAGCAAACGTTTCTGCGGTCAACGACACCGGGTGAGA
TGCCGGAGAAGCTTTGGCGGCGATAGTTGGCGATGCCCCTGGAAAAAGAA
TAACACGGTGCAAGCCATCAAGCTTCCGTGGATATGCTGATCGCGCAAAC
CGCGTGATAACCACCCGTTGACGAGATTGCCGAGCTCCTCGACGCGGCGT
GATTAGTTTCTGTTCGAGCGTCGTGTTCCAAAGGACAGAACTCATGAAAT
GGCTGACCTGGTTCGCCACTGCTCTCCCAACCCTTTGCTTGTGTAGTTAT
CTCTCTGTGTTGGGAAGGCCGTGCACGAGATGCTTTGGAGTTGTATGTCA
GTGTGCTATCCGTACGTCCTCATCCACGTTTTTAGTCCAGTCCGGAGTTA
ACAGTGGTCTCCATTCAGGGGATGGCTTTTCGTGAGTAAGCAACATGACC
TGCTTGGCTTGGATCACGCTCGAGCATTTGTTCCGAAGGGTGACTGGTTT
CGCCACATGTCTGTCCTTCCAGGTTTACCGCGGACTACACGTTTGCCTTC
GAGCCGATCGTCTTGCTCCTGCCGGACAAGATCCAGGAAGGCCACGACTT
CAAATGGGTAAGCCACTGTTCCGCTCGGCCTCCCATCACATCACCGTTTC
GCACCGGCTGGGATTTGGGGCACAAAGTTGTTGTGAGCTTTGAGTTAGTT
GGGGTTCATGACGTCTTGGTGCAGACAATCTTTTCTTCGGTGATTGACCC
TTTGGTCGAGAAGTACGACGAAATGGAGTAACGCCTGGTGCTACGGCTTT
GCCACTGCTGTTGTCGTGTGTCGGTTGGCCAGCCGCTTCTCCTTGCTGTC
GCTCTAGTCTCCTCCGCGGACGTGGACATGATTTCGCTTTCGCCCCGGTA
CAAGTAGTGTTGTGCGCTCCAGCTGGATTTAACACCTACCGATTCGTGGA
ATTTGTGTGTGTGTGTGTGTGTGTGTGTTTTTTTTTTACGGTGTGCTTTG
GACCTACGCCCACCAGCAGTACAGCAGTATGCACGGCTTCCTTGTTGCAC
CTTGTGCTTGGCGCGACCCGGTTTTTAACCCGCACTTGACTGAGTTGATC
TGACTTTTTTTTATGGCCTCCTCCTCGAGAACCGGCTCTGGGAGGACAAG
GCTCCAACATGTTACATGTGTGCAATCAATCGCACACACACACGAGTCAC
AACGGCAAGGATGATACAGCAGCGAGGAGACGTCCATTGTGTGTTTGTAG
ATAGTCTTTCTGCCAACAAAGTAGTGGGAACTACAGTCGGAACTGCTGTA
GTTCACGTCAGGGTAAGCCCGTGTGATACCCACGAGGTTGCAAATTGAGG
ATGTGCTCCACAACCCCCCCCTCCCAGTCCCTAACTACAGTCTTTCGCGA
ATCACGCCTTGACTGAGTATGCCGGATTGGTCTTGGATTTGGCGTTTTAT
TTTGTGTGTCAGGTTAACTTCACGATGGAGCCGAGCGTATGCCTGCGCGA
GGCTGGGTTCATGTCGCGACTTTTGGCGGCGACGGTCATCGGGTATGACG
AGATCATGGTCAACATGTTCATGTACTCCATGAAGTCAAAGGGACTGCTT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7525:124..3973-

>mRNA_E_fasciculatus_S2_contig7525.15687.1 ID=mRNA_E_fasciculatus_S2_contig7525.15687.1|Name=mRNA_E_fasciculatus_S2_contig7525.15687.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=861bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7525:124..3973- (Ectocarpus fasciculatus EfasUO2)
GAGGGTAGACGACTAGCAGGGCGGACGGCGCATGGGACAGAGAGAGACAG
AGGCCACTCCCCCTCCGGCGGAGCCATGGAGTACGAGAGGGCGCTCTTCC
GCGTGTACGACAAGTCGATGGAAGGCTTCCACTCTCGAGGCGTGAGGAGC
GCGTGCAACCTGCTGCAGAAGTTGTTCTTGGTCGCATCGGCCGGCCTTTT
CGCCGCACTCGTCCTCTTGCACCACCAGTTCGTCAACAAGCCAGGCTGCC
TGGCGCCGTTGCTCGAAGAAGCGGCGCGAAGAGAAGGAGTGCTCATCCTG
CCCACCGTCCGATCAGTCACCGCCAATGTCACGCTAGGCGAGATCGACAC
AGACCCGGAGGGCGTGATCGTTGGCGGCCCAGGCCAGGTGGCGGGGGGGG
GCGGCGGCGACGACGCGGACGACGACGAGGAGGAGGAAGAAGACGAGCGA
CACCCCAGCAAGATACAGCTCCCGTCGGGGAACTGGGTACCCTACGACGT
CATGGACGAGGCAGTGGCGGCGGCGGCGGGGGGTGCGGAGGGGAGTGAGG
GTGGAGAGGCGAGCAGCAATGACACCGCTGTTGTGGATGCTGGGGGGGCC
GAGAACGGAGCAAACGTTTCTGCGGTCAACGACACCGGGTTTACCGCGGA
CTACACGTTTGCCTTCGAGCCGATCGTCTTGCTCCTGCCGGACAAGATCC
AGGAAGGCCACGACTTCAAATGGGTTAACTTCACGATGGAGCCGAGCGTA
TGCCTGCGCGAGGCTGGGTTCATGTCGCGACTTTTGGCGGCGACGGTCAT
CGGGTATGACGAGATCATGGTCAACATGTTCATGTACTCCATGAAGTCAA
AGGGACTGCTT
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