mRNA_E_fasciculatus_S2_contig7515.15678.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7515.15678.1
Unique NamemRNA_E_fasciculatus_S2_contig7515.15678.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7515.15678.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP57_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.240e-20
Identity = 53/76 (69.74%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:    1 TSGGTQERINHDDGSAQPDSRQSHPAVTHPADLDGAAKSDNDVAALMERMASMRILMDATHKEVKANLEDSRAKTA 228
            TS GTQER NHD  SAQP SRQSH A T PA  DGAAKSD DVAALMERMASMRI  +ATH+E+KA LE ++ + A
Sbjct:   24 TSHGTQERANHDASSAQPASRQSHAAATRPAVPDGAAKSDIDVAALMERMASMRIRTEATHEELKAGLEAAKEENA 99
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BLAST of mRNA_E_fasciculatus_S2_contig7515.15678.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC16_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 5.480e-19
Identity = 52/76 (68.42%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:    1 TSGGTQERINHDDGSAQPDSRQSHPAVTHPADLDGAAKSDNDVAALMERMASMRILMDATHKEVKANLEDSRAKTA 228
            TS GTQER NHD  SAQP SRQSH A T PA  DGAAKSD DVAALMER+ASMRI  +ATH+E+KA LE ++ + A
Sbjct:  137 TSHGTQERANHDASSAQPASRQSHAAATRPAVPDGAAKSDIDVAALMERIASMRIRTEATHEELKAGLEAAKEENA 212
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BLAST of mRNA_E_fasciculatus_S2_contig7515.15678.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7G3_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 7.310e-19
Identity = 52/71 (73.24%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 TSGGTQERINHDDGSAQPDSRQSHPAVTHPADLDGAAKSDNDVAALMERMASMRILMDATHKEVKANLEDS 213
            TS GTQER NHD  SAQP SRQSH A T PA  DGAAKSD DVAALMERMASMRI  +A H+E+KA LE S
Sbjct:   23 TSHGTQERANHDASSAQPASRQSHAAATRPAVPDGAAKSDIDVAALMERMASMRIRTEARHEELKAGLEAS 93
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BLAST of mRNA_E_fasciculatus_S2_contig7515.15678.1 vs.
Match: Putative (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.660e-18
Identity = 52/71 (73.24%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    1 TSGGTQERINHDDGSAQPDSRQSHPAVTHPADLDGAAKSDNDVAALMERMASMRILMDATHKEVKANLEDS 213
            TS GTQER NHD  SAQP SRQSH A T PA  DGAAK+D DVAALMERMASMRI  +ATH+E+KA LE S
Sbjct:  747 TSHGTQERTNHDASSAQPASRQSHAAATRPAAPDGAAKNDLDVAALMERMASMRIRTEATHEELKAGLEAS 817
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BLAST of mRNA_E_fasciculatus_S2_contig7515.15678.1 vs.
Match: Leucine (Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 5.810e-18
Identity = 51/71 (71.83%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    1 TSGGTQERINHDDGSAQPDSRQSHPAVTHPADLDGAAKSDNDVAALMERMASMRILMDATHKEVKANLEDS 213
            TS GT+ER+NHD  SAQP SRQSH A T PA  DGA KSD DVAALMERMASMRI  +ATH+E+KA LE S
Sbjct:  932 TSHGTRERLNHDASSAQPASRQSHAAATRPAVPDGAPKSDIDVAALMERMASMRIRTEATHEELKAGLEAS 1002
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7515.15678.1 vs.
Match: Leucine (rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 4.220e-16
Identity = 49/71 (69.01%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 TSGGTQERINHDDGSAQPDSRQSHPAVTHPADLDGAAKSDNDVAALMERMASMRILMDATHKEVKANLEDS 213
            TS  T+ER NHD  SAQP SRQSH A T PA  DGAAKSD DVAALMER+ASMR+  +ATH+E+KA LE S
Sbjct:  720 TSHVTRERTNHDASSAQPASRQSHAAATRPAVPDGAAKSDIDVAALMERVASMRMRTEATHEELKAGLEAS 790
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7515.15678.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW4_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 4.970e-12
Identity = 43/71 (60.56%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 TSGGTQERINHDDGSAQPDSRQSHPAVTHPADLDGAAKSDNDVAALMERMASMRILMDATHKEVKANLEDS 213
            TS GTQER NHD  SAQP SRQSH A T PA  DGAAKSD DVAALMER+    +  +A H E+++ L+ S
Sbjct:   24 TSHGTQERANHDASSAQPASRQSHAAATRPAVPDGAAKSDIDVAALMERL----VRTEARHVELESGLKAS 90
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7515.15678.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
Uncharacterized1.240e-2069.74protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.480e-1968.42protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.310e-1973.24protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Putative1.660e-1873.24Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
Leucine5.810e-1871.83Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus... [more]
Leucine4.220e-1669.01rich repeat protein n=1 Tax=Ectocarpus siliculosus... [more]
Uncharacterized4.970e-1260.56protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7515contigE_fasciculatus_S2_contig7515:2514..3053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score95.5
Seed ortholog evalue2.7e-17
Seed eggNOG ortholog2880.D7FUA1
Model size541
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
Exons1
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs2QQYD@2759,COG4886@1
EC2.7.11.1
Cds size540
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842413.2962902-CDS-E_fasciculatus_S2_contig7515:2513..30531696842413.2962902-CDS-E_fasciculatus_S2_contig7515:2513..3053Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7515 2514..3053 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7515.15678.1prot_E_fasciculatus_S2_contig7515.15678.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7515 2514..3053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7515.15678.1

>prot_E_fasciculatus_S2_contig7515.15678.1 ID=prot_E_fasciculatus_S2_contig7515.15678.1|Name=mRNA_E_fasciculatus_S2_contig7515.15678.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=180bp
TSGGTQERINHDDGSAQPDSRQSHPAVTHPADLDGAAKSDNDVAALMERM
ASMRILMDATHKEVKANLEDSRAKTAELEASLEASRAKQDELEAGLEAAN
EENATLKEGLTSMRILMEATQEEVKARLDCSKAKTTALEAAFEGARATQV
ELETGLEAANAENATIKDDLTSVRIHIEAT
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mRNA from alignment at E_fasciculatus_S2_contig7515:2514..3053+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7515.15678.1 ID=mRNA_E_fasciculatus_S2_contig7515.15678.1|Name=mRNA_E_fasciculatus_S2_contig7515.15678.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=540bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7515:2514..3053+ (Ectocarpus fasciculatus EfasUO2)
ACATCTGGCGGCACGCAGGAGCGAATCAATCACGACGATGGCTCCGCCCA
ACCAGATTCACGGCAGTCGCATCCTGCAGTCACTCACCCAGCCGATCTTG
ACGGTGCCGCCAAAAGCGATAATGACGTGGCAGCTTTGATGGAGCGTATG
GCTTCGATGCGAATCCTCATGGACGCAACACACAAAGAGGTGAAAGCCAA
TCTGGAAGACTCAAGGGCAAAAACAGCGGAGCTGGAAGCCAGTCTGGAAG
CTTCTCGCGCTAAACAAGACGAGCTTGAAGCTGGTCTAGAAGCTGCGAAT
GAAGAGAATGCCACGCTGAAAGAAGGTCTGACTTCCATGCGCATCCTCAT
GGAAGCAACACAAGAGGAGGTGAAAGCCCGTCTGGACTGTTCAAAAGCGA
AGACGACCGCGCTCGAAGCCGCTTTTGAAGGTGCTCGCGCGACACAAGTC
GAGCTGGAAACTGGTCTAGAAGCTGCGAATGCAGAGAACGCCACGATAAA
AGACGATCTTACTTCCGTGCGCATCCACATAGAAGCAACA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7515:2514..3053+

>mRNA_E_fasciculatus_S2_contig7515.15678.1 ID=mRNA_E_fasciculatus_S2_contig7515.15678.1|Name=mRNA_E_fasciculatus_S2_contig7515.15678.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=540bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7515:2514..3053+ (Ectocarpus fasciculatus EfasUO2)
ACATCTGGCGGCACGCAGGAGCGAATCAATCACGACGATGGCTCCGCCCA
ACCAGATTCACGGCAGTCGCATCCTGCAGTCACTCACCCAGCCGATCTTG
ACGGTGCCGCCAAAAGCGATAATGACGTGGCAGCTTTGATGGAGCGTATG
GCTTCGATGCGAATCCTCATGGACGCAACACACAAAGAGGTGAAAGCCAA
TCTGGAAGACTCAAGGGCAAAAACAGCGGAGCTGGAAGCCAGTCTGGAAG
CTTCTCGCGCTAAACAAGACGAGCTTGAAGCTGGTCTAGAAGCTGCGAAT
GAAGAGAATGCCACGCTGAAAGAAGGTCTGACTTCCATGCGCATCCTCAT
GGAAGCAACACAAGAGGAGGTGAAAGCCCGTCTGGACTGTTCAAAAGCGA
AGACGACCGCGCTCGAAGCCGCTTTTGAAGGTGCTCGCGCGACACAAGTC
GAGCTGGAAACTGGTCTAGAAGCTGCGAATGCAGAGAACGCCACGATAAA
AGACGATCTTACTTCCGTGCGCATCCACATAGAAGCAACA
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