prot_E_fasciculatus_S2_contig7503.15668.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E_fasciculatus_S2_contig7503.15668.1
Unique Name	prot_E_fasciculatus_S2_contig7503.15668.1
Type	polypeptide
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length	165

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig7503.15668.1 vs. uniprot
Match: D7FNU9_ECTSI (RNA binding / nucleic acid binding n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNU9_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 1.160e-83
Identity = 129/131 (98.47%), Postives = 131/131 (100.00%), Query Frame = 0

Query:    1 MGDVGVINHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVVTKKAGTYVPRDKRKLPSADASNGNGVHQAAPAPAATTP 131
            MGDVGVINHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAK+ESDVVTKKAGTYVPRDKRKLPSADASNGNG+HQAAPAPAATTP
Sbjct:    1 MGDVGVINHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKSESDVVTKKAGTYVPRDKRKLPSADASNGNGLHQAAPAPAATTP 131

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BLAST of mRNA_E_fasciculatus_S2_contig7503.15668.1 vs. uniprot
Match: A0A7S2UV81_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV81_9STRA)

HSP 1 Score: 155 bits (392), Expect = 7.490e-45
Identity = 77/106 (72.64%), Postives = 90/106 (84.91%), Query Frame = 0

Query:    8 NHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVVTKKAGTYVPRDKRKLPSADA 113
            N TIY++NLNEKIKK +LKKSLHS+FSQFGKI+ I ACRG+KL+GQAWVVF +K+ ATNALRQMQGFPF+EK MRI F+KT+SDVV K+ GTY  R KRK P A A
Sbjct:    2 NETIYINNLNEKIKKEVLKKSLHSIFSQFGKIIQITACRGIKLRGQAWVVFQDKASATNALRQMQGFPFYEKPMRIAFSKTKSDVVAKRDGTYTKR-KRKAPPAPA 106

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BLAST of mRNA_E_fasciculatus_S2_contig7503.15668.1 vs. uniprot
Match: A0A7S1UIG7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIG7_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.260e-43
Identity = 71/98 (72.45%), Postives = 83/98 (84.69%), Query Frame = 0

Query:    9 HTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVVTKKAGTYVPRDKR 106
            HTIYV N+NEK+KK  LK++LH VFSQFGKIVDIVACRG KL+GQAWV F + S AT ALRQMQGFPF++K MRI FAK ESDV+ K+ GT+VPR+KR
Sbjct:   14 HTIYVQNINEKVKKEQLKRALHGVFSQFGKIVDIVACRGKKLRGQAWVCFDQVSSATTALRQMQGFPFYDKPMRISFAKVESDVIAKRNGTFVPREKR 111

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BLAST of mRNA_E_fasciculatus_S2_contig7503.15668.1 vs. uniprot
Match: A0A8J2X4I1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X4I1_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.620e-43
Identity = 78/128 (60.94%), Postives = 99/128 (77.34%), Query Frame = 0

Query:    8 NHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVVTKKAGTYVPRDKRKL----PSADASNGNGVHQAAPAPAATTP 131
            N T+Y++NLNEKIKK  LKKS++SVFSQFGKI+D+V CRGLKL+GQAWVVFA+   ATNALRQMQGFPF++K MRI FAK++SD++ K+ GT+ PR+KRK     P+A A+      +A PAP    P
Sbjct:    7 NQTVYINNLNEKIKKDALKKSIYSVFSQFGKILDVVCCRGLKLRGQAWVVFADVGAATNALRQMQGFPFYDKPMRIAFAKSKSDMIAKRDGTFKPREKRKREDPKPAAPAAA-----KALPAPGDAPP 129

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BLAST of mRNA_E_fasciculatus_S2_contig7503.15668.1 vs. uniprot
Match: F0YDU7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDU7_AURAN)

HSP 1 Score: 151 bits (381), Expect = 4.340e-43
Identity = 72/100 (72.00%), Postives = 87/100 (87.00%), Query Frame = 0

Query:    8 NHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVVTKKAGTYVPRDKRK 107
            N T+Y++NLNEKIKK  LKKS++SVFSQFGKI+D+V CRGLKL+GQAWVVFA+   ATNALRQMQGFPFF+K MRI FAK +SDVV+K  G++V R+KRK
Sbjct:    7 NQTVYINNLNEKIKKDALKKSIYSVFSQFGKILDVVCCRGLKLRGQAWVVFADVGAATNALRQMQGFPFFDKPMRIAFAKAKSDVVSKADGSFVAREKRK 106

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BLAST of mRNA_E_fasciculatus_S2_contig7503.15668.1 vs. uniprot
Match: A0A176VE80_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VE80_MARPO)

HSP 1 Score: 151 bits (382), Expect = 6.220e-43
Identity = 80/124 (64.52%), Postives = 97/124 (78.23%), Query Frame = 0

Query:    8 NHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVVTKKAGTYVPRDKRKLPSADASNGNGVHQAAPAPAATTP 131
            N TIY++NLNEKIKK  LKKSL++VFSQFGKI+DIVAC+ LKL+GQAWVVF + + ATNALRQMQGFPF++K MRIQ+AK++SD V+K  GT+V R+KRK     A      HQA  APAA  P
Sbjct:    8 NQTIYINNLNEKIKKEELKKSLYAVFSQFGKILDIVACKTLKLRGQAWVVFDDVTAATNALRQMQGFPFYDKPMRIQYAKSKSDAVSKADGTFVSREKRKKNDEKAERKRREHQAE-APAAGPP 130

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BLAST of mRNA_E_fasciculatus_S2_contig7503.15668.1 vs. uniprot
Match: A0A7S3NJ60_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJ60_9STRA)

HSP 1 Score: 149 bits (376), Expect = 2.770e-42
Identity = 69/125 (55.20%), Postives = 98/125 (78.40%), Query Frame = 0

Query:    7 INHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVVTKKAGTYVPRDKRKLPSADASNGNGVHQAAPAPAATTP 131
            +N T+Y++NLNEKIKK +LKK+L+S+FSQFGKI+D+V CRG++L+GQAW+ FA+   AT+A+++MQGFPF++K MRI FAK++SD++ K  GT+V R+KRK  S  A+N +  HQA       TP
Sbjct:   11 VNQTLYINNLNEKIKKQVLKKALYSLFSQFGKILDLVCCRGIRLRGQAWICFADIGAATSAMQKMQGFPFYDKPMRIAFAKSKSDIIAKADGTFVSREKRKRESPPAANTDAAHQAPQKKQLPTP 135

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BLAST of mRNA_E_fasciculatus_S2_contig7503.15668.1 vs. uniprot
Match: A0A6V1NUL1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NUL1_HETAK)

HSP 1 Score: 148 bits (373), Expect = 1.230e-41
Identity = 71/98 (72.45%), Postives = 84/98 (85.71%), Query Frame = 0

Query:   10 TIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVVTKKAGTYVPRDKRK 107
            TIY++NLNEKIKK +LKKSLHS+FSQFGKI++IVACRGLKL+GQAWV FA+ + ATNALRQMQGFPF+EK MRI FAK +SD V K+ G Y P  KR+
Sbjct:   11 TIYINNLNEKIKKDVLKKSLHSIFSQFGKIIEIVACRGLKLRGQAWVCFADTAAATNALRQMQGFPFYEKPMRIAFAKNKSDKVLKREGVYDPAKKRR 108

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BLAST of mRNA_E_fasciculatus_S2_contig7503.15668.1 vs. uniprot
Match: A0A2K1KBA5_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KBA5_PHYPA)

HSP 1 Score: 146 bits (369), Expect = 5.490e-41
Identity = 69/99 (69.70%), Postives = 87/99 (87.88%), Query Frame = 0

Query:    8 NHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVVTKKAGTYVPRDKR 106
            N TIY++NLNEK+KK  LKKSL++VFSQFGKI+DIVAC+ LKL+GQAWVVF + + AT+ALRQMQGFPF++K MRIQ+AKT SD ++K  GTYVP++KR
Sbjct:    9 NQTIYINNLNEKVKKEELKKSLYAVFSQFGKIMDIVACKTLKLRGQAWVVFDDVTAATSALRQMQGFPFYDKPMRIQYAKTTSDAISKANGTYVPKEKR 107

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BLAST of mRNA_E_fasciculatus_S2_contig7503.15668.1 vs. uniprot
Match: A0A6P3YWV3_ZIZJJ (U1 small nuclear ribonucleoprotein A-like n=1 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P3YWV3_ZIZJJ)

HSP 1 Score: 141 bits (356), Expect = 2.210e-40
Identity = 68/100 (68.00%), Postives = 86/100 (86.00%), Query Frame = 0

Query:    8 NHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVVTKKAGTYVPRDKRK 107
            N TIY++NLNEKIK   LKKSLH+VFSQFGKI++++A + LK KGQAWVVF + S A+NALRQMQGFPF++K MRIQ+AKT+SD++ K  GT+VPR+KRK
Sbjct:   13 NMTIYINNLNEKIKLEELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVVFEDVSSASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRK 112

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig7503.15668.1 vs. uniprot

BLAST of mRNA_E_fasciculatus_S2_contig7503.15668.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FNU9_ECTSI	1.160e-83	98.47	RNA binding / nucleic acid binding n=2 Tax=Ectocar...	[more]
A0A7S2UV81_9STRA	7.490e-45	72.64	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A7S1UIG7_9STRA	1.260e-43	72.45	Hypothetical protein (Fragment) n=1 Tax=Phaeomonas...	[more]
A0A8J2X4I1_9STRA	1.620e-43	60.94	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]
F0YDU7_AURAN	4.340e-43	72.00	Uncharacterized protein n=1 Tax=Aureococcus anopha...	[more]
A0A176VE80_MARPO	6.220e-43	64.52	Uncharacterized protein n=2 Tax=Marchantia polymor...	[more]
A0A7S3NJ60_9STRA	2.770e-42	55.20	Hypothetical protein n=1 Tax=Aureoumbra lagunensis...	[more]
A0A6V1NUL1_HETAK	1.230e-41	72.45	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A2K1KBA5_PHYPA	5.490e-41	69.70	Uncharacterized protein n=2 Tax=Physcomitrium pate...	[more]
A0A6P3YWV3_ZIZJJ	2.210e-40	68.00	U1 small nuclear ribonucleoprotein A-like n=1 Tax=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 10..84 e-value: 8.4E-13 score: 58.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 11..81 e-value: 2.3E-9 score: 37.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 9..88 score: 13.601
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 7..101 e-value: 2.7E-26 score: 93.7
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 8..159
None	No IPR available	PANTHER	PTHR10501:SF46	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 8..159
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..105

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig7503	contig	E_fasciculatus_S2_contig7503:333..2911 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig7503.15668.1	mRNA_E_fasciculatus_S2_contig7503.15668.1	Ectocarpus fasciculatus EfasUO2	mRNA	E_fasciculatus_S2_contig7503 333..3199 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E_fasciculatus_S2_contig7503.15668.1 ID=prot_E_fasciculatus_S2_contig7503.15668.1|Name=mRNA_E_fasciculatus_S2_contig7503.15668.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=165bp
MGDVGVINHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKL
KGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVVTKKAGTY
VPRDKRKLPSADASNGNGVHQAAPAPAATTPGAAAGAAGAAAAPPASALP
SVPPPAAVVAGAPPP

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom