mRNA_E_fasciculatus_S2_contig7503.15668.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7503.15668.1 vs.
Match: RNA (binding / nucleic acid binding n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNU9_ECTSI) HSP 1 Score: 255 bits (652), Expect = 4.510e-82 Identity = 129/131 (98.47%), Postives = 131/131 (100.00%), Query Frame = 1
Query: 289 MGDVGVINHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVVTKKAGTYVPRDKRKLPSADASNGNGVHQAAPAPAATTP 681
MGDVGVINHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAK+ESDVVTKKAGTYVPRDKRKLPSADASNGNG+HQAAPAPAATTP
Sbjct: 1 MGDVGVINHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKSESDVVTKKAGTYVPRDKRKLPSADASNGNGLHQAAPAPAATTP 131
BLAST of mRNA_E_fasciculatus_S2_contig7503.15668.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV81_9STRA) HSP 1 Score: 155 bits (392), Expect = 1.930e-43 Identity = 77/106 (72.64%), Postives = 90/106 (84.91%), Query Frame = 1
Query: 310 NHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVVTKKAGTYVPRDKRKLPSADA 627
N TIY++NLNEKIKK +LKKSLHS+FSQFGKI+ I ACRG+KL+GQAWVVF +K+ ATNALRQMQGFPF+EK MRI F+KT+SDVV K+ GTY R KRK P A A
Sbjct: 2 NETIYINNLNEKIKKEVLKKSLHSIFSQFGKIIQITACRGIKLRGQAWVVFQDKASATNALRQMQGFPFYEKPMRIAFSKTKSDVVAKRDGTYTKR-KRKAPPAPA 106
BLAST of mRNA_E_fasciculatus_S2_contig7503.15668.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIG7_9STRA) HSP 1 Score: 150 bits (378), Expect = 3.130e-42 Identity = 71/98 (72.45%), Postives = 83/98 (84.69%), Query Frame = 1
Query: 313 HTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVVTKKAGTYVPRDKR 606
HTIYV N+NEK+KK LK++LH VFSQFGKIVDIVACRG KL+GQAWV F + S AT ALRQMQGFPF++K MRI FAK ESDV+ K+ GT+VPR+KR
Sbjct: 14 HTIYVQNINEKVKKEQLKRALHGVFSQFGKIVDIVACRGKKLRGQAWVCFDQVSSATTALRQMQGFPFYDKPMRISFAKVESDVIAKRNGTFVPREKR 111
BLAST of mRNA_E_fasciculatus_S2_contig7503.15668.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X4I1_9STRA) HSP 1 Score: 152 bits (384), Expect = 4.090e-42 Identity = 78/128 (60.94%), Postives = 99/128 (77.34%), Query Frame = 1
Query: 310 NHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVVTKKAGTYVPRDKRKL----PSADASNGNGVHQAAPAPAATTP 681
N T+Y++NLNEKIKK LKKS++SVFSQFGKI+D+V CRGLKL+GQAWVVFA+ ATNALRQMQGFPF++K MRI FAK++SD++ K+ GT+ PR+KRK P+A A+ +A PAP P
Sbjct: 7 NQTVYINNLNEKIKKDALKKSIYSVFSQFGKILDVVCCRGLKLRGQAWVVFADVGAATNALRQMQGFPFYDKPMRIAFAKSKSDMIAKRDGTFKPREKRKREDPKPAAPAAA-----KALPAPGDAPP 129
BLAST of mRNA_E_fasciculatus_S2_contig7503.15668.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDU7_AURAN) HSP 1 Score: 151 bits (381), Expect = 1.090e-41 Identity = 72/100 (72.00%), Postives = 87/100 (87.00%), Query Frame = 1
Query: 310 NHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVVTKKAGTYVPRDKRK 609
N T+Y++NLNEKIKK LKKS++SVFSQFGKI+D+V CRGLKL+GQAWVVFA+ ATNALRQMQGFPFF+K MRI FAK +SDVV+K G++V R+KRK
Sbjct: 7 NQTVYINNLNEKIKKDALKKSIYSVFSQFGKILDVVCCRGLKLRGQAWVVFADVGAATNALRQMQGFPFFDKPMRIAFAKAKSDVVSKADGSFVAREKRK 106
BLAST of mRNA_E_fasciculatus_S2_contig7503.15668.1 vs.
Match: Uncharacterized (protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VE80_MARPO) HSP 1 Score: 151 bits (382), Expect = 1.560e-41 Identity = 80/124 (64.52%), Postives = 97/124 (78.23%), Query Frame = 1
Query: 310 NHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVVTKKAGTYVPRDKRKLPSADASNGNGVHQAAPAPAATTP 681
N TIY++NLNEKIKK LKKSL++VFSQFGKI+DIVAC+ LKL+GQAWVVF + + ATNALRQMQGFPF++K MRIQ+AK++SD V+K GT+V R+KRK A HQA APAA P
Sbjct: 8 NQTIYINNLNEKIKKEELKKSLYAVFSQFGKILDIVACKTLKLRGQAWVVFDDVTAATNALRQMQGFPFYDKPMRIQYAKSKSDAVSKADGTFVSREKRKKNDEKAERKRREHQAE-APAAGPP 130
BLAST of mRNA_E_fasciculatus_S2_contig7503.15668.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJ60_9STRA) HSP 1 Score: 149 bits (376), Expect = 6.830e-41 Identity = 69/125 (55.20%), Postives = 98/125 (78.40%), Query Frame = 1
Query: 307 INHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVVTKKAGTYVPRDKRKLPSADASNGNGVHQAAPAPAATTP 681
+N T+Y++NLNEKIKK +LKK+L+S+FSQFGKI+D+V CRG++L+GQAW+ FA+ AT+A+++MQGFPF++K MRI FAK++SD++ K GT+V R+KRK S A+N + HQA TP
Sbjct: 11 VNQTLYINNLNEKIKKQVLKKALYSLFSQFGKILDLVCCRGIRLRGQAWICFADIGAATSAMQKMQGFPFYDKPMRIAFAKSKSDIIAKADGTFVSREKRKRESPPAANTDAAHQAPQKKQLPTP 135
BLAST of mRNA_E_fasciculatus_S2_contig7503.15668.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NUL1_HETAK) HSP 1 Score: 148 bits (373), Expect = 3.010e-40 Identity = 71/98 (72.45%), Postives = 84/98 (85.71%), Query Frame = 1
Query: 316 TIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVVTKKAGTYVPRDKRK 609
TIY++NLNEKIKK +LKKSLHS+FSQFGKI++IVACRGLKL+GQAWV FA+ + ATNALRQMQGFPF+EK MRI FAK +SD V K+ G Y P KR+
Sbjct: 11 TIYINNLNEKIKKDVLKKSLHSIFSQFGKIIEIVACRGLKLRGQAWVCFADTAAATNALRQMQGFPFYEKPMRIAFAKNKSDKVLKREGVYDPAKKRR 108
BLAST of mRNA_E_fasciculatus_S2_contig7503.15668.1 vs.
Match: Uncharacterized (protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KBA5_PHYPA) HSP 1 Score: 146 bits (369), Expect = 1.330e-39 Identity = 69/99 (69.70%), Postives = 87/99 (87.88%), Query Frame = 1
Query: 310 NHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVVTKKAGTYVPRDKR 606
N TIY++NLNEK+KK LKKSL++VFSQFGKI+DIVAC+ LKL+GQAWVVF + + AT+ALRQMQGFPF++K MRIQ+AKT SD ++K GTYVP++KR
Sbjct: 9 NQTIYINNLNEKVKKEELKKSLYAVFSQFGKIMDIVACKTLKLRGQAWVVFDDVTAATSALRQMQGFPFYDKPMRIQYAKTTSDAISKANGTYVPKEKR 107
BLAST of mRNA_E_fasciculatus_S2_contig7503.15668.1 vs.
Match: U1 (small nuclear ribonucleoprotein A-like n=1 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P3YWV3_ZIZJJ) HSP 1 Score: 141 bits (356), Expect = 5.140e-39 Identity = 68/100 (68.00%), Postives = 86/100 (86.00%), Query Frame = 1
Query: 310 NHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVVTKKAGTYVPRDKRK 609
N TIY++NLNEKIK LKKSLH+VFSQFGKI++++A + LK KGQAWVVF + S A+NALRQMQGFPF++K MRIQ+AKT+SD++ K GT+VPR+KRK
Sbjct: 13 NMTIYINNLNEKIKLEELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVVFEDVSSASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRK 112 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7503.15668.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7503.15668.1 >prot_E_fasciculatus_S2_contig7503.15668.1 ID=prot_E_fasciculatus_S2_contig7503.15668.1|Name=mRNA_E_fasciculatus_S2_contig7503.15668.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=165bp MGDVGVINHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLback to top mRNA from alignment at E_fasciculatus_S2_contig7503:333..3199- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7503.15668.1 ID=mRNA_E_fasciculatus_S2_contig7503.15668.1|Name=mRNA_E_fasciculatus_S2_contig7503.15668.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2867bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7503:333..3199- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7503:333..3199- >mRNA_E_fasciculatus_S2_contig7503.15668.1 ID=mRNA_E_fasciculatus_S2_contig7503.15668.1|Name=mRNA_E_fasciculatus_S2_contig7503.15668.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=495bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7503:333..3199- (Ectocarpus fasciculatus EfasUO2)back to top |