mRNA_E_fasciculatus_S2_contig75.15663.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig75.15663.1
Unique NamemRNA_E_fasciculatus_S2_contig75.15663.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig75.15663.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig75contigE_fasciculatus_S2_contig75:47047..48662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size413
Hectar predicted targeting categoryother localisation
Exons3
Cds size246
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842411.7441452-UTR-E_fasciculatus_S2_contig75:47046..472121696842411.7441452-UTR-E_fasciculatus_S2_contig75:47046..47212Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig75 47047..47212 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842411.7539432-CDS-E_fasciculatus_S2_contig75:47212..472641696842411.7539432-CDS-E_fasciculatus_S2_contig75:47212..47264Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig75 47213..47264 -
1696842411.763248-CDS-E_fasciculatus_S2_contig75:47697..477881696842411.763248-CDS-E_fasciculatus_S2_contig75:47697..47788Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig75 47698..47788 -
1696842411.7719338-CDS-E_fasciculatus_S2_contig75:48559..486621696842411.7719338-CDS-E_fasciculatus_S2_contig75:48559..48662Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig75 48560..48662 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig75.15663.1prot_E_fasciculatus_S2_contig75.15663.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig75 47213..48662 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig75.15663.1

>prot_E_fasciculatus_S2_contig75.15663.1 ID=prot_E_fasciculatus_S2_contig75.15663.1|Name=mRNA_E_fasciculatus_S2_contig75.15663.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=82bp
PSAEETQNPLHFRRIKDFLPLAEQEEATEVLEVEDDSCSNPPGGSVGKPI
ACQDRDVVYEVDCSMPDENGMVCSHKRRQGA*
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mRNA from alignment at E_fasciculatus_S2_contig75:47047..48662-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig75.15663.1 ID=mRNA_E_fasciculatus_S2_contig75.15663.1|Name=mRNA_E_fasciculatus_S2_contig75.15663.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1616bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig75:47047..48662- (Ectocarpus fasciculatus EfasUO2)
CCAAGCGCGGAGGAGACGCAGAACCCCCTTCATTTCCGGAGAATCAAGGA
CTTCCTGCCGCTGGCCGAGCAAGAAGAGGCAACGGAGGTGCTAGAAGTTG
AAGGTATCTGGCAATGTCTTATCCAAACTGGCACGTCATACCCCGGCGAA
CAAAAGGCCAGATCTGCCTGCGCTGCAATCGATGATCTTGCAGCCGCAGC
ACGTCACGCACCACTGAGTTGTACTGTAAGAAATATACATATTATTCCCG
CGTGGTGCTCGACTCAAGTGAGAACCTATACTTGTCCACGGCAGACAATG
ATAGACTCCAACATTTCAAGAATCGAGGCACAGTCCATCGTTTAGTTTAG
CCGGCAGAAAGTTGAATGGTAGACACCAAGGTTTCTATCGTAGCAACCTT
CGGTTCTGCCTCACAAACACATCGTAGACGACCTCGGCACCGTCCGGCAC
CACTGACGAGGCGAGTTCGACGCACGAATGATGTTCGAGTGAGCTGATCC
CCGGAAACACTCACGTTGCCTTTGGTTAAGCGCCGGACAACCCGATTCAT
CTCCAGACCTCCATCTTGCTGAGACACAGCCAGCAGGTATAATCCCATCA
TCTGCCATCGGTGATGCCGTAGGCATCGACAATGGGGAACAGGTGGGAGG
GGCGTGCAAACGGTTTGGGATAATACATCCCGCCGAAACAAGTATAGCTC
CTGGTCTCTAGGGACCCCGCACCGGATCGGCGACGAACGCATGTGCATCT
GCGTCGGAGTTGGTACGTACAAGCTCCGCTCCGCCAGTTCACTGCATGCA
TTGATCTTATCTTCGACAAGCAACAGGCACCACCCGCCCGCCCCGCCTGC
TGCATTTAATGGAAATGCCATGAGACGATTCTTGTTCAAACCCGCCAGGC
GGAAGCGTTGGAAAGCCGATCGCCTGCCAGGACAGGGACGTCGTTTATGA
GGTTGACTGCTCAATGTGAGTCAACGACGATGAACGAATCGATTGTGTCG
GCAAACATCCTAATCTAGCAGAGCCAGCATGAAGAACACATGTTCCCGTT
CGATAAACGAAGAGGGGACGCGGGCAGTCAACCCTGTTTGTCGCCGTGGC
CGCATCACGGAAAATGACGCTGTCGGTTGTTCTACTCTGTTTCCTCACCT
CGGGCTCGTTTGGGCTGGCAAGACCCCCGCTGACTTGGCCGCGAGAGACG
AGGATCTCGTACAGCTCACACTGTACAGCAGAGGAAGTTAACGTAGGAGA
TGGGAGCGAGCGCAGGTCGATTAAGAAAAACTGAGCACTGTCGCCATGGC
TACAAGTTAGAAGCCCAGAAACGTGAGCAACAAAGAGTCTCCGGCTTCAA
CAACCAGAATACGCGATATGTCGATGTTCGCTATTGTACGTTGGGCAGGC
CGGACGAGAACGGAATGGTGTGTTCACACAAGAGGCGACAGGGCGCTTAA
TAAGAAAATTACGGGAGAAAACAGCACATGGACCCGGCATAGAACGTTTG
CTAGCGAAACGTGATATACTGCGAACAAGATGTTAGCCCCCAGTAAAACA
AAGCAAAATTCGAACTGTACAACCGCAGATGTGGTTAGCGACCGCAACGG
TAGGCGTCAACGTACA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig75:47047..48662-

>mRNA_E_fasciculatus_S2_contig75.15663.1 ID=mRNA_E_fasciculatus_S2_contig75.15663.1|Name=mRNA_E_fasciculatus_S2_contig75.15663.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=246bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig75:47047..48662- (Ectocarpus fasciculatus EfasUO2)
CCAAGCGCGGAGGAGACGCAGAACCCCCTTCATTTCCGGAGAATCAAGGA
CTTCCTGCCGCTGGCCGAGCAAGAAGAGGCAACGGAGGTGCTAGAAGTTG
AAGACGATTCTTGTTCAAACCCGCCAGGCGGAAGCGTTGGAAAGCCGATC
GCCTGCCAGGACAGGGACGTCGTTTATGAGGTTGACTGCTCAATGCCGGA
CGAGAACGGAATGGTGTGTTCACACAAGAGGCGACAGGGCGCTTAA
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