mRNA_E_fasciculatus_S2_contig75.15660.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig75.15660.1
Unique NamemRNA_E_fasciculatus_S2_contig75.15660.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig75.15660.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig75contigE_fasciculatus_S2_contig75:131..2748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1842
Hectar predicted targeting categoryother localisation
Exons3
Cds size1149
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842411.5837917-UTR-E_fasciculatus_S2_contig75:130..1491696842411.5837917-UTR-E_fasciculatus_S2_contig75:130..149Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig75 131..149 +
1696842411.6329784-UTR-E_fasciculatus_S2_contig75:2074..27481696842411.6329784-UTR-E_fasciculatus_S2_contig75:2074..2748Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig75 2075..2748 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842411.594753-CDS-E_fasciculatus_S2_contig75:149..2871696842411.594753-CDS-E_fasciculatus_S2_contig75:149..287Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig75 150..287 +
1696842411.6049619-CDS-E_fasciculatus_S2_contig75:752..10221696842411.6049619-CDS-E_fasciculatus_S2_contig75:752..1022Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig75 753..1022 +
1696842411.619088-CDS-E_fasciculatus_S2_contig75:1333..20741696842411.619088-CDS-E_fasciculatus_S2_contig75:1333..2074Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig75 1334..2074 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig75.15660.1prot_E_fasciculatus_S2_contig75.15660.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig75 150..2074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig75.15660.1

>prot_E_fasciculatus_S2_contig75.15660.1 ID=prot_E_fasciculatus_S2_contig75.15660.1|Name=mRNA_E_fasciculatus_S2_contig75.15660.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=383bp
MNELAKVVAELGVDLWLDGQYLSAQVKDVASKTRAEQLLRHELASKYPNL
LVSVTTVADATGPTVVTGAGAGTLSPPLSEDRERGGSGGDDWKAGLKQAK
APAAAPATVHGGDVAPAVTTGSASQRKGGESAAFGQGEQSTRPTVREAAT
PAAVEVGVLTTPATALRPSRRGTGASSAATAARRGSDAGVGGGDGDGRGA
ACSLSSSFGTASGPPASAVGTGGFSSVGTARVPSPANTGDSGALAPAGVG
QHTLAPTSAAFPARTNGAAAAPTPAAGAGYATDGGEATADSRRAAAAPTA
AVVSDATDASRPAAFAAGSSWPVRQEIDTVVGPERDELLTQVPQEESVGH
GGWEDDEEEQGQRLMMSFAMPPHLTAGDAAWK*
back to top

mRNA from alignment at E_fasciculatus_S2_contig75:131..2748+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig75.15660.1 ID=mRNA_E_fasciculatus_S2_contig75.15660.1|Name=mRNA_E_fasciculatus_S2_contig75.15660.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2618bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig75:131..2748+ (Ectocarpus fasciculatus EfasUO2)
TTTCGTCCGGCAAGGGTTCATGAACGAACTGGCAAAGGTCGTGGCCGAGT
TGGGGGTGGACTTGTGGCTCGACGGCCAATATTTATCTGCACAAGTCAAA
GACGTTGCTTCGAAGACGCGTGCTGAACAACTTCTTCGACACGAGCTCGC
TTCCAAGGTAGGTACTCTTAGAAGACCTCGGTGACGTCATGGAAACGTAA
CCACGTTATGGAGCGTCGAACGGGAGGCCTCAGGAGAGAGAGGATACAGG
TTTCAGTCCTGGCTTGTGCCGTCCCGCGTGCTCTGTACGCCTATGTTGTG
TTAACTCTGCGGTTGACGAGTCTCGAGCGGTGTGTACATGGCGTAGTTTC
CCATGCAAATCATGCCCCGGAAGGAATGGCCTCTGGCACCACTTTTACGT
TCGACCGTTGGCACCAATTAAGTTTATGGTAGGCAGGGGTGACGCTGCAA
CAGTTTGAAACGCGTGCAGACGTTGCAGGACCGCGAATGATTCTGACACC
AGCTCCTTTCCTGCACCGCACCCTCCCTGCCACGGCGTCTTGCCTCGGTG
CCGGCAATCGCGTGAAAACTATCGCATCCACAACGCCACTTGCTCAACAA
ATACCCGGGGATACCATCGCAGTATCCTAACCTTCTGGTGAGCGTTACGA
CCGTTGCCGACGCGACGGGCCCTACGGTGGTGACCGGCGCTGGGGCCGGA
ACTCTTTCTCCCCCCCTGTCCGAGGATCGAGAGCGCGGCGGCAGCGGCGG
GGATGATTGGAAGGCTGGCTTGAAGCAAGCCAAGGCTCCTGCTGCCGCTC
CTGCCACAGTGCACGGTGGTGACGTTGCTCCAGCTGTTACCACGGGTTCG
GCTTCACAGCGGAAAGGCGGAGAGAGTGCGGCGTTTGGTCAGGTATGTAA
TGGTAGCCTTTGGGGAAGCCTGACGGAAAACACTGATGCATCATGTTTGC
CTCCGGCTTTTGTGGAACCAAACGAAAGAATGTCGGCATCAATAACCCAC
CCGTTCGCCAAACATGTTGTGCGTGTCAGTATCACGTTAGGAGACTCTTC
CGGCTTTTGCTTTGGTAAGCTGATAACGGGTATGTTTGCCGTGCTGTGCT
GTGACTCGGACGGCTACGCAGAAACGATGGTTGCCACTTATCATTGTGGG
TCTTTGACGGAACCTGACCACGACCAATGTTACGTTTGCCGGTGGATGTT
TAGGGAGAGCAATCTACGCGACCCACCGTGAGGGAAGCAGCGACGCCGGC
GGCGGTGGAGGTGGGAGTGTTGACGACGCCTGCGACGGCACTGAGACCTT
CAAGACGGGGGACTGGCGCTTCTTCAGCCGCTACCGCTGCTCGACGTGGT
AGCGATGCTGGTGTTGGCGGTGGCGATGGGGACGGTCGTGGTGCTGCTTG
CTCTTTATCGTCGAGTTTCGGGACAGCCTCCGGTCCGCCAGCAAGTGCAG
TGGGTACGGGGGGCTTCAGCAGCGTGGGAACGGCACGGGTTCCCTCCCCC
GCCAACACGGGAGATTCTGGAGCTCTGGCTCCGGCGGGAGTGGGGCAGCA
CACGTTGGCGCCGACATCAGCAGCGTTTCCGGCAAGGACAAACGGGGCAG
CTGCCGCCCCTACCCCTGCTGCTGGTGCCGGATATGCTACAGATGGCGGC
GAAGCTACTGCGGACAGCAGGCGAGCTGCTGCTGCACCCACTGCTGCTGT
TGTATCCGACGCTACTGACGCCTCTCGCCCGGCGGCGTTTGCTGCTGGTT
CTTCTTGGCCGGTCCGGCAGGAGATCGACACGGTGGTTGGCCCGGAGCGT
GACGAGTTGTTGACACAAGTACCGCAGGAGGAGTCTGTCGGACACGGCGG
TTGGGAAGACGACGAGGAGGAGCAAGGGCAGAGGCTCATGATGTCCTTTG
CCATGCCACCCCACTTAACAGCTGGAGATGCTGCGTGGAAATGACGAGGA
GGGTGGCATTTGTCAATATGCCATGAGCACAGGAAGGTGGGGGATGACCC
CAATAGGTTCACCATATCCGGGGTAGGGGGGGGTGAGCTGCGGGTACGCG
GTGAGGGTAGGTAGCCGCTGGTATAAGGTGCATCCCTCGTTGCCTGTGCG
TGCATGCAGGGGAAGCAGCTCTTCACCCCTCTGAGACATTTTACAGGAGT
TTGGTCGGCTTCGAAATTGCAACCAAGATGCGGCGTTCTTGGTGGACATT
TGAAGGCGATCAAACAACGTGTCCATGCGTGCAACTGCCGCACCAAGGGG
CAACGGGAGGTCAGGCAGTTGACGTAGGGGCGGGGTGAATGGCCTAGAGA
GAGGGGCCGAGGGGGACAAAACAGCATGGAGGGCATGGAGAACGGTGGTG
CCATCGATGAATACGAAGCGGCACGTTGGATGTCACCAGAGTCTTCTGCT
CCCCTGCCTGGTTGATGTTGTCGCGGGCATTAGAAAAGCGGCGAAAATCA
AGTCATTCTAGCTGCCGGCCGACTACTACTGTAAACAAGCTGGATTTTTC
CCTGACGGGATCAACCTTGTATATGCACGGCGGCAGTGGACCACCGTCAC
GAGCCCAGCAAGTCGTCACGGCGGCCAAGTGCGGAGATCCAGACCGGAAA
AGGGCGACAAGCACCGAC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig75:131..2748+

>mRNA_E_fasciculatus_S2_contig75.15660.1 ID=mRNA_E_fasciculatus_S2_contig75.15660.1|Name=mRNA_E_fasciculatus_S2_contig75.15660.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1149bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig75:131..2748+ (Ectocarpus fasciculatus EfasUO2)
ATGAACGAACTGGCAAAGGTCGTGGCCGAGTTGGGGGTGGACTTGTGGCT
CGACGGCCAATATTTATCTGCACAAGTCAAAGACGTTGCTTCGAAGACGC
GTGCTGAACAACTTCTTCGACACGAGCTCGCTTCCAAGTATCCTAACCTT
CTGGTGAGCGTTACGACCGTTGCCGACGCGACGGGCCCTACGGTGGTGAC
CGGCGCTGGGGCCGGAACTCTTTCTCCCCCCCTGTCCGAGGATCGAGAGC
GCGGCGGCAGCGGCGGGGATGATTGGAAGGCTGGCTTGAAGCAAGCCAAG
GCTCCTGCTGCCGCTCCTGCCACAGTGCACGGTGGTGACGTTGCTCCAGC
TGTTACCACGGGTTCGGCTTCACAGCGGAAAGGCGGAGAGAGTGCGGCGT
TTGGTCAGGGAGAGCAATCTACGCGACCCACCGTGAGGGAAGCAGCGACG
CCGGCGGCGGTGGAGGTGGGAGTGTTGACGACGCCTGCGACGGCACTGAG
ACCTTCAAGACGGGGGACTGGCGCTTCTTCAGCCGCTACCGCTGCTCGAC
GTGGTAGCGATGCTGGTGTTGGCGGTGGCGATGGGGACGGTCGTGGTGCT
GCTTGCTCTTTATCGTCGAGTTTCGGGACAGCCTCCGGTCCGCCAGCAAG
TGCAGTGGGTACGGGGGGCTTCAGCAGCGTGGGAACGGCACGGGTTCCCT
CCCCCGCCAACACGGGAGATTCTGGAGCTCTGGCTCCGGCGGGAGTGGGG
CAGCACACGTTGGCGCCGACATCAGCAGCGTTTCCGGCAAGGACAAACGG
GGCAGCTGCCGCCCCTACCCCTGCTGCTGGTGCCGGATATGCTACAGATG
GCGGCGAAGCTACTGCGGACAGCAGGCGAGCTGCTGCTGCACCCACTGCT
GCTGTTGTATCCGACGCTACTGACGCCTCTCGCCCGGCGGCGTTTGCTGC
TGGTTCTTCTTGGCCGGTCCGGCAGGAGATCGACACGGTGGTTGGCCCGG
AGCGTGACGAGTTGTTGACACAAGTACCGCAGGAGGAGTCTGTCGGACAC
GGCGGTTGGGAAGACGACGAGGAGGAGCAAGGGCAGAGGCTCATGATGTC
CTTTGCCATGCCACCCCACTTAACAGCTGGAGATGCTGCGTGGAAATGA
back to top