mRNA_E_fasciculatus_S2_contig7487.15652.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7487.15652.1
Unique NamemRNA_E_fasciculatus_S2_contig7487.15652.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7487.15652.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U7_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 4.700e-59
Identity = 111/133 (83.46%), Postives = 119/133 (89.47%), Query Frame = 1 
Query:    4 INAGDLPLMAAVSSNATLMQVEVVESAKGSAPFVNEVQRITIIPAGT--SPTAGTFTIVVGRNSTSPLAYNISESDLALSLEKLPGVRSEVVVNGSSNGGSQSWTVTFMSPGPQSLLASPCEKDVAGNGTSPD 396
            INAGDLPLM+AVSSNATLM VEVV S KGSAPFV E+QRI I  + T  SPTAGTF+IVVGRN TSPLAYNISESDLALSLEKLPG+RSEV V+GSS G S+SWTVTFMSPGPQSLLASPCE+DVAGNGTSPD
Sbjct: 2753 INAGDLPLMSAVSSNATLMHVEVVRSVKGSAPFVREIQRIAITTSSTNTSPTAGTFSIVVGRNQTSPLAYNISESDLALSLEKLPGIRSEVGVHGSSTGDSRSWTVTFMSPGPQSLLASPCEEDVAGNGTSPD 2885
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BLAST of mRNA_E_fasciculatus_S2_contig7487.15652.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW5_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 1.620e-58
Identity = 111/133 (83.46%), Postives = 117/133 (87.97%), Query Frame = 1 
Query:    4 INAGDLPLMAAVSSNATLMQVEVVESAKGSAPFVNEVQRITIIPAGTS--PTAGTFTIVVGRNSTSPLAYNISESDLALSLEKLPGVRSEVVVNGSSNGGSQSWTVTFMSPGPQSLLASPCEKDVAGNGTSPD 396
            INAGDLPLM+AVSSN TLMQ+EVVES KGSAPFV EVQRITIIP  TS  PTAGTF IVVGRN T PLA+N SESDLA SLEKLPG+RSEV VNGSS   S+SWTVTFMSPGPQSLLASPCE+DVAGNGTSPD
Sbjct: 2749 INAGDLPLMSAVSSNTTLMQMEVVESVKGSAPFVREVQRITIIPTSTSTSPTAGTFNIVVGRNQTRPLAHNTSESDLARSLEKLPGIRSEVGVNGSSTEDSRSWTVTFMSPGPQSLLASPCEEDVAGNGTSPD 2881
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7487.15652.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.700e-5983.46protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.620e-5883.46protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7487contigE_fasciculatus_S2_contig7487:7084..7479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score194.9
Seed ortholog evalue2.2e-47
Seed eggNOG ortholog2880.D7G6U7
Model size396
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs28IVJ@1,2QR77@2759
Cds size369
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842410.63157-UTR-E_fasciculatus_S2_contig7487:7083..71101696842410.63157-UTR-E_fasciculatus_S2_contig7487:7083..7110Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7487 7084..7110 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842410.6483161-CDS-E_fasciculatus_S2_contig7487:7110..74791696842410.6483161-CDS-E_fasciculatus_S2_contig7487:7110..7479Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7487 7111..7479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7487.15652.1prot_E_fasciculatus_S2_contig7487.15652.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7487 7111..7479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7487.15652.1

>prot_E_fasciculatus_S2_contig7487.15652.1 ID=prot_E_fasciculatus_S2_contig7487.15652.1|Name=mRNA_E_fasciculatus_S2_contig7487.15652.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=123bp
MAAVSSNATLMQVEVVESAKGSAPFVNEVQRITIIPAGTSPTAGTFTIVV
GRNSTSPLAYNISESDLALSLEKLPGVRSEVVVNGSSNGGSQSWTVTFMS
PGPQSLLASPCEKDVAGNGTSPD
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mRNA from alignment at E_fasciculatus_S2_contig7487:7084..7479+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7487.15652.1 ID=mRNA_E_fasciculatus_S2_contig7487.15652.1|Name=mRNA_E_fasciculatus_S2_contig7487.15652.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=396bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7487:7084..7479+ (Ectocarpus fasciculatus EfasUO2)
CCGATCAACGCTGGAGATCTACCCTTGATGGCTGCAGTGAGTTCCAACGC
CACGCTGATGCAGGTGGAGGTGGTGGAGTCTGCCAAGGGGTCGGCTCCGT
TCGTGAACGAAGTTCAGCGCATCACCATCATCCCTGCTGGCACCAGCCCC
ACAGCGGGAACGTTTACTATTGTCGTCGGCCGCAATTCTACGAGCCCCCT
AGCGTACAACATCAGCGAGTCCGACTTGGCTCTCTCCCTGGAGAAACTAC
CTGGTGTTCGCAGCGAGGTCGTGGTCAACGGCAGCAGCAATGGTGGTTCC
CAGAGCTGGACTGTGACGTTCATGTCGCCGGGACCACAGAGTCTACTGGC
TAGCCCCTGCGAAAAAGACGTGGCTGGCAATGGTACATCCCCGGAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7487:7084..7479+

>mRNA_E_fasciculatus_S2_contig7487.15652.1 ID=mRNA_E_fasciculatus_S2_contig7487.15652.1|Name=mRNA_E_fasciculatus_S2_contig7487.15652.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=369bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7487:7084..7479+ (Ectocarpus fasciculatus EfasUO2)
ATGGCTGCAGTGAGTTCCAACGCCACGCTGATGCAGGTGGAGGTGGTGGA
GTCTGCCAAGGGGTCGGCTCCGTTCGTGAACGAAGTTCAGCGCATCACCA
TCATCCCTGCTGGCACCAGCCCCACAGCGGGAACGTTTACTATTGTCGTC
GGCCGCAATTCTACGAGCCCCCTAGCGTACAACATCAGCGAGTCCGACTT
GGCTCTCTCCCTGGAGAAACTACCTGGTGTTCGCAGCGAGGTCGTGGTCA
ACGGCAGCAGCAATGGTGGTTCCCAGAGCTGGACTGTGACGTTCATGTCG
CCGGGACCACAGAGTCTACTGGCTAGCCCCTGCGAAAAAGACGTGGCTGG
CAATGGTACATCCCCGGAC
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