mRNA_E_fasciculatus_S2_contig7481.15647.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7481.15647.1
Unique NamemRNA_E_fasciculatus_S2_contig7481.15647.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7481.15647.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS1_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 1.350e-33
Identity = 66/89 (74.16%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:    4 QCWCGSANADYAVHGESSDCTYACAGDAEQSCGGFDAANVYLYAVESTASPT---VRDWAGPYIPLGCYEDDPEDRIMDNLALSDAFMT 261
            +CWCGSA ADY +HGES+DCTYAC GDA+Q+CGGFDAANVYLYA EST SPT     D AGP + LGCYEDD EDRIMD+LALSD  MT
Sbjct:  572 ECWCGSAGADYTLHGESTDCTYACVGDADQTCGGFDAANVYLYAAESTPSPTPSPTADDAGP-LALGCYEDDREDRIMDDLALSDNAMT 659
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7481.15647.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS2_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 2.030e-32
Identity = 64/89 (71.91%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:    4 QCWCGSANADYAVHGESSDCTYACAGDAEQSCGGFDAANVYLYAVESTASPT---VRDWAGPYIPLGCYEDDPEDRIMDNLALSDAFMT 261
            +CWCGSA ADYA HGES+DCTYACAGDA+++CGGFDAANVYLY  EST SPT     D +GP + LGCYEDD E+RIMD+LALSD  MT
Sbjct:  265 ECWCGSAGADYASHGESADCTYACAGDADETCGGFDAANVYLYTGESTPSPTPSPTADESGP-LSLGCYEDDRENRIMDDLALSDFSMT 352
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7481.15647.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX48_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 6.600e-31
Identity = 61/87 (70.11%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:    4 QCWCGSANADYAVHGESSDCTYACAGDAEQSCGGFDAANVYLYAVESTASPTVRDW-AGPYIPLGCYEDDPEDRIMDNLALSDAFMT 261
            +CWCGSA ADYA+HGES+DCTY CAGDA+Q CGGFDAANVY Y   ST SPT     AG ++ LGCYEDD EDRIMD L LSD+ MT
Sbjct:  604 ECWCGSAGADYALHGESTDCTYPCAGDADQMCGGFDAANVYRYTDGSTPSPTPSPTEAGSHLALGCYEDDREDRIMDELVLSDSSMT 690
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7481.15647.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK9_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.140e-30
Identity = 59/87 (67.82%), Postives = 69/87 (79.31%), Query Frame = 1 
Query:    4 QCWCGSANADYAVHGESSDCTYACAGDAEQSCGGFDAANVYLYAVESTASPTVRD-WAGPYIPLGCYEDDPEDRIMDNLALSDAFMT 261
            +CWCGSA+ADYA+HGES+ CTYAC+GD  Q+CGGF+AANVYLY  +ST SPT      GP   LGCY DDPEDRIMD+L LSD+ MT
Sbjct:  244 ECWCGSADADYALHGESTGCTYACSGDTSQTCGGFNAANVYLYPDDSTPSPTPSPIQEGPSPALGCYADDPEDRIMDDLVLSDSSMT 330
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7481.15647.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL0_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 7.520e-30
Identity = 56/87 (64.37%), Postives = 66/87 (75.86%), Query Frame = 1 
Query:    4 QCWCGSANADYAVHGESSDCTYACAGDAEQSCGGFDAANVYLYAVESTASPTVRDW-AGPYIPLGCYEDDPEDRIMDNLALSDAFMT 261
            +CWCGS  ADY VHGES+DCTYAC+GDA+Q+CGGFDAANVY Y  +ST S       A P++ LGCY DD E RIMD+L LSD+ MT
Sbjct:   33 ECWCGSVGADYTVHGESTDCTYACSGDADQTCGGFDAANVYRYTDDSTPSXXXXXTEAAPFVALGCYGDDREARIMDDLVLSDSSMT 119
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7481.15647.1 vs.
Match: WSC (domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD7_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.600e-22
Identity = 50/83 (60.24%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:    4 QCWCGSANADYAVHGESSDCTYACAGDAEQSCGGFDAANVYLYAVESTASPTVRDWAGPYIPLGCYEDDPEDRIMDNLALSDA 252
            +CWCGSA+ DYA+HGES+DCTYACAGDA+Q+CGGFDAANVY Y  ESTA             +GCY+D+   RIM+ LAL+D+
Sbjct:  251 ECWCGSADMDYALHGESTDCTYACAGDADQTCGGFDAANVYSYTDESTAISAF---------VGCYQDESGSRIME-LALTDS 323
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7481.15647.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE8_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.830e-22
Identity = 46/83 (55.42%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:    4 QCWCGSANADYAVHGESSDCTYACAGDAEQSCGGFDAANVYLYAVESTASPTVRDWAGPYIPLGCYEDDPEDRIMDNLALSDA 252
            +CWCGSA  DYA+HGES+DCTY CAG+A+Q+CGGFDAANVY Y  EST + +          +GCY+D+ + R+M+ LAL+D+
Sbjct:   23 ECWCGSAGMDYALHGESTDCTYGCAGNADQTCGGFDAANVYRYTNESTPTSSF---------VGCYQDESDARMME-LALTDS 95
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7481.15647.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE6_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 1.030e-21
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:    4 QCWCGSANADYAVHGESSDCTYACAGDAEQSCGGFDAANVYLYAVESTASPTVRDWAGPYIPLGCYEDDPEDRIMDNLALSDA 252
            +CWCGSA  +YA+HGES+DCTYACAGDA+Q+CGGFDAANVY Y  EST + +          +GCY+D+ + RIM+ LAL+D+
Sbjct:  678 ECWCGSAGVEYALHGESTDCTYACAGDADQTCGGFDAANVYRYTDESTPTSSF---------VGCYQDESDARIME-LALTDS 750
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7481.15647.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ36_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 6.100e-17
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:    4 QCWCGSANADYAVHGESSDCTYACAGDAEQSCGGFDAANVYLYAVESTASPTVRDWAGPYIPLGCYEDDPEDRIMDNLALSDAF 255
            +CWCG A  DY  HGES++CTY C G+ +++CGGF AA+VY Y   ST  PT       +  +GC++DD +DRIM+ LAL+D+F
Sbjct:   33 ECWCGPAGTDYEKHGESTECTYECPGNPDETCGGFYAASVYAY---STVEPTPT-----FSYVGCFQDD-QDRIME-LALTDSF 106
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7481.15647.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNS1_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 2.760e-15
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:    4 QCWCGSANADYAVHGESSDCTYACAGDAEQSCGGFDAANVYLYAVESTASPTVRDWAGPYIPLGCYEDDPEDRIMDNLALSDAF 255
            +CWCG A  DY  HGES++CTY C G+ +++CGGF AA+VY Y   ST  PT       +  +GC++DD +DRIM+ LAL+D+F
Sbjct:  269 ECWCGPAGTDYEKHGESTECTYECPGNPDETCGGFYAASVYAY---STVEPTPT-----FSYVGCFQDD-QDRIME-LALTDSF 342
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7481.15647.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
Uncharacterized1.350e-3374.16protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.030e-3271.91protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.600e-3170.11protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.140e-3067.82protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.520e-3064.37protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
WSC1.600e-2260.24domain containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized1.830e-2255.42protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.030e-2157.83protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
WSC6.100e-1750.00domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized2.760e-1550.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7481contigE_fasciculatus_S2_contig7481:830..1090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score134.4
Seed ortholog evalue2.5e-29
Seed eggNOG ortholog2880.D7FRS1
Model size261
KEGG koko:K22017
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Sushi, nidogen and EGF-like
EggNOG OGsKOG4157@1,KOG4157@2759,KOG4291@1,KOG4291@2759
Cds size261
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842410.381758-CDS-E_fasciculatus_S2_contig7481:829..10901696842410.381758-CDS-E_fasciculatus_S2_contig7481:829..1090Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7481 830..1090 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7481.15647.1prot_E_fasciculatus_S2_contig7481.15647.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7481 830..1090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7481.15647.1

>prot_E_fasciculatus_S2_contig7481.15647.1 ID=prot_E_fasciculatus_S2_contig7481.15647.1|Name=mRNA_E_fasciculatus_S2_contig7481.15647.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=87bp
AQCWCGSANADYAVHGESSDCTYACAGDAEQSCGGFDAANVYLYAVESTA
SPTVRDWAGPYIPLGCYEDDPEDRIMDNLALSDAFMT
back to top

mRNA from alignment at E_fasciculatus_S2_contig7481:830..1090+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7481.15647.1 ID=mRNA_E_fasciculatus_S2_contig7481.15647.1|Name=mRNA_E_fasciculatus_S2_contig7481.15647.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=261bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7481:830..1090+ (Ectocarpus fasciculatus EfasUO2)
GCACAGTGCTGGTGCGGTTCGGCCAATGCGGACTACGCTGTACACGGGGA
GTCCAGCGACTGCACTTACGCCTGCGCAGGGGACGCTGAACAATCATGCG
GCGGGTTCGACGCGGCCAACGTCTACCTCTACGCGGTTGAAAGCACTGCC
AGCCCCACAGTTAGGGACTGGGCTGGCCCCTATATCCCCCTTGGCTGCTA
CGAGGATGATCCCGAAGACCGTATCATGGACAACCTTGCTCTTTCTGACG
CCTTCATGACG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7481:830..1090+

>mRNA_E_fasciculatus_S2_contig7481.15647.1 ID=mRNA_E_fasciculatus_S2_contig7481.15647.1|Name=mRNA_E_fasciculatus_S2_contig7481.15647.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=261bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7481:830..1090+ (Ectocarpus fasciculatus EfasUO2)
GCACAGTGCTGGTGCGGTTCGGCCAATGCGGACTACGCTGTACACGGGGA
GTCCAGCGACTGCACTTACGCCTGCGCAGGGGACGCTGAACAATCATGCG
GCGGGTTCGACGCGGCCAACGTCTACCTCTACGCGGTTGAAAGCACTGCC
AGCCCCACAGTTAGGGACTGGGCTGGCCCCTATATCCCCCTTGGCTGCTA
CGAGGATGATCCCGAAGACCGTATCATGGACAACCTTGCTCTTTCTGACG
CCTTCATGACG
back to top