mRNA_E_fasciculatus_S2_contig7468.15633.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7468.15633.1 vs.
Match: Calmodulin (2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAT5_ECTSI) HSP 1 Score: 244 bits (622), Expect = 5.600e-78 Identity = 137/215 (63.72%), Postives = 144/215 (66.98%), Query Frame = 1
Query: 247 RDEPQLPTAARACLKKFTTIAASLGLKTTREQLREDFEKVVRSNGLVDTSPGNPWLGADDTERPVIGFTYKVFRRYYLAKIQGELLEVNIRQAWEDLHHGTGMADGVNRGKLMPSGASPIGFDASGASGETPGGGDXXXXXXXXXXXXHGDSDIGGGDSRGRPYVARAELQKILTREGEALTDEEVDELLRECRPDEEGRIVYEGYRRMLIDPSL 891
R +P + T TT + L++T KVVRSNGLVDTSPG+PWLGADDTERPV+ FTYKVFRRYYLAKIQGELLEVNIRQAWEDLH GT ET GGGD GDSDIGGGDSRGRPYVARAELQKILTREGEALTDEEVDELLRECRPDE GRIVYEGYRRMLIDPSL
Sbjct: 3 RSQPSISTPV------ITTRDCRIRLRSTAHVWSCLQRKVVRSNGLVDTSPGDPWLGADDTERPVVAFTYKVFRRYYLAKIQGELLEVNIRQAWEDLHQGT----------------------------ETSGGGDGGRHYRHHQQ--RGDSDIGGGDSRGRPYVARAELQKILTREGEALTDEEVDELLRECRPDEVGRIVYEGYRRMLIDPSL 181
BLAST of mRNA_E_fasciculatus_S2_contig7468.15633.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2F4_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 2.590e-9 Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 1
Query: 727 GRPYVARAELQKILTREGEALTDEEVDELLRECRPDEEGRIVYEGYRRMLIDPS 888
G Y+ + +L +++T+ G+ LTDEE E++REC PDEEGRI +E YR MLID +
Sbjct: 192 GEEYITKDKLFEVMTKHGDKLTDEEAAEMIRECNPDEEGRIFFEKYRTMLIDTT 245
BLAST of mRNA_E_fasciculatus_S2_contig7468.15633.1 vs.
Match: LOW (QUALITY PROTEIN: calmodulin-like protein 3 n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=UPI0007EE2F04) HSP 1 Score: 56.2 bits (134), Expect = 1.700e-6 Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 1
Query: 718 DSRGRPYVARAELQKILTREGEALTDEEVDELLRECRPDEEGRIVYEGYRRMLI 879
D G YV+ AEL+ ++TR GE L+DE+VDE++R D +G++ YE + RML+
Sbjct: 59 DKDGNGYVSAAELRHVMTRLGEKLSDEKVDEMIRSANTDGDGQVNYEEFVRMLV 112
BLAST of mRNA_E_fasciculatus_S2_contig7468.15633.1 vs.
Match: Calmodulin-A-like (n=1 Tax=Podarcis muralis TaxID=64176 RepID=A0A670JEP2_PODMU) HSP 1 Score: 56.6 bits (135), Expect = 2.570e-6 Identity = 25/55 (45.45%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 718 DSRGRPYVARAELQKILTREGEALTDEEVDELLRECRPDEEGRIVYEGYRRMLID 882
D G Y++ AEL+ +LT GE LTDEEVDE+++E D +GR+ YE + R++++
Sbjct: 94 DKDGNGYISTAELRHVLTNLGEKLTDEEVDEMIKEADVDGDGRVNYEEFVRVMME 148
BLAST of mRNA_E_fasciculatus_S2_contig7468.15633.1 vs.
Match: EF-hand (domain-containing protein n=1 Tax=Coregonus sp. 'balchen' TaxID=861768 RepID=A0A6F9B9H4_9TELE) HSP 1 Score: 54.7 bits (130), Expect = 2.890e-6 Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1
Query: 718 DSRGRPYVARAELQKILTREGEALTDEEVDELLRECRPDEEGRIVYEGYRRMLIDPSL 891
D G Y++ AEL+ ++T GE LTDEEVDE++RE D +G++ YEG L+ +L
Sbjct: 23 DKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGQFPHLLSLTL 80
BLAST of mRNA_E_fasciculatus_S2_contig7468.15633.1 vs.
Match: EF-hand (domain-containing protein n=1 Tax=Anser brachyrhynchus TaxID=132585 RepID=A0A8B9C195_9AVES) HSP 1 Score: 55.8 bits (133), Expect = 3.580e-6 Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 1
Query: 718 DSRGRPYVARAELQKILTREGEALTDEEVDELLRECRPDEEGRIVYEGYRRMLIDPSL 891
D G Y++ AEL+ ++T GE LTDEEVDE++RE D +G++ YEG R P L
Sbjct: 27 DKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGERWRRPGPPL 84
BLAST of mRNA_E_fasciculatus_S2_contig7468.15633.1 vs.
Match: Calmodulin (n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L7_9PHAE) HSP 1 Score: 53.9 bits (128), Expect = 3.960e-6 Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 1
Query: 718 DSRGRPYVARAELQKILTREGEALTDEEVDELLRECRPDEEGRIVYEGYRRMLI 879
D G +++ AEL+ I+T GE LTDEEVDE++RE D +G+I YE + +M++
Sbjct: 15 DKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMM 68
BLAST of mRNA_E_fasciculatus_S2_contig7468.15633.1 vs.
Match: CALMS (protein (Fragment) n=1 Tax=Columbina picui TaxID=115618 RepID=A0A7K4SFU7_COLPI) HSP 1 Score: 55.5 bits (132), Expect = 4.420e-6 Identity = 24/55 (43.64%), Postives = 38/55 (69.09%), Query Frame = 1
Query: 718 DSRGRPYVARAELQKILTREGEALTDEEVDELLRECRPDEEGRIVYEGYRRMLID 882
D G Y++ AEL+ ++T GE LTDEEVDE++RE + +G++ YE + RM+ +
Sbjct: 74 DKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADSNNDGQVNYEEFVRMMTE 128
BLAST of mRNA_E_fasciculatus_S2_contig7468.15633.1 vs.
Match: Calmodulin, (striated muscle n=1 Tax=Colius striatus TaxID=57412 RepID=A0A091KRQ9_COLST) HSP 1 Score: 55.8 bits (133), Expect = 4.630e-6 Identity = 23/55 (41.82%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 718 DSRGRPYVARAELQKILTREGEALTDEEVDELLRECRPDEEGRIVYEGYRRMLID 882
D G Y++ AEL+ ++T+ GE LTDEEVDE+++E + +G++ YE + RM+++
Sbjct: 92 DKDGNGYISAAELRHVMTKLGEKLTDEEVDEMIKEADSNNDGQVNYEEFVRMMME 146
BLAST of mRNA_E_fasciculatus_S2_contig7468.15633.1 vs.
Match: calmodulin-like (n=1 Tax=Sebastes umbrosus TaxID=72105 RepID=UPI00189F1B73) HSP 1 Score: 55.8 bits (133), Expect = 4.900e-6 Identity = 25/54 (46.30%), Postives = 39/54 (72.22%), Query Frame = 1
Query: 718 DSRGRPYVARAELQKILTREGEALTDEEVDELLRECRPDEEGRIVYEGYRRMLI 879
D G Y++ AEL++++T GE LTDEEVDE++RE D +GR+ YE + +M++
Sbjct: 95 DKDGCGYISAAELRQVMTNLGEKLTDEEVDEMIREADIDGDGRVNYEEFVKMMM 148 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7468.15633.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7468.15633.1 >prot_E_fasciculatus_S2_contig7468.15633.1 ID=prot_E_fasciculatus_S2_contig7468.15633.1|Name=mRNA_E_fasciculatus_S2_contig7468.15633.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=298bp QDEYCFSQHNYEGDDGDESQVPGSIYEDQAHDGGWASAESEEDGQDAGIKback to top mRNA from alignment at E_fasciculatus_S2_contig7468:221..3910+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7468.15633.1 ID=mRNA_E_fasciculatus_S2_contig7468.15633.1|Name=mRNA_E_fasciculatus_S2_contig7468.15633.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3690bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7468:221..3910+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7468:221..3910+ >mRNA_E_fasciculatus_S2_contig7468.15633.1 ID=mRNA_E_fasciculatus_S2_contig7468.15633.1|Name=mRNA_E_fasciculatus_S2_contig7468.15633.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=894bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7468:221..3910+ (Ectocarpus fasciculatus EfasUO2)back to top |