mRNA_E_fasciculatus_S2_contig746.15629.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig746.15629.1
Unique NamemRNA_E_fasciculatus_S2_contig746.15629.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig746.15629.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig746contigE_fasciculatus_S2_contig746:21324..27335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size588
Hectar predicted targeting categoryother localisation
Exons2
Cds size306
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842408.4433267-UTR-E_fasciculatus_S2_contig746:21323..214081696842408.4433267-UTR-E_fasciculatus_S2_contig746:21323..21408Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig746 21324..21408 +
1696842408.4524796-UTR-E_fasciculatus_S2_contig746:26832..269341696842408.4524796-UTR-E_fasciculatus_S2_contig746:26832..26934Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig746 26833..26934 +
1696842408.4715593-UTR-E_fasciculatus_S2_contig746:27240..273351696842408.4715593-UTR-E_fasciculatus_S2_contig746:27240..27335Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig746 27241..27335 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842408.4611082-CDS-E_fasciculatus_S2_contig746:26934..272401696842408.4611082-CDS-E_fasciculatus_S2_contig746:26934..27240Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig746 26935..27240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig746.15629.1prot_E_fasciculatus_S2_contig746.15629.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig746 26935..27240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig746.15629.1

>prot_E_fasciculatus_S2_contig746.15629.1 ID=prot_E_fasciculatus_S2_contig746.15629.1|Name=mRNA_E_fasciculatus_S2_contig746.15629.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=102bp
MGVGTFSCWRAEAHLFDDASPSGFGCSQAPQRFPLLDGIDGFVGGFCNSK
RRPVRPLVNVPVRGHSIRGGIARRNVREAQRGVEGKREGHITRCRRHVLM
R*
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mRNA from alignment at E_fasciculatus_S2_contig746:21324..27335+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig746.15629.1 ID=mRNA_E_fasciculatus_S2_contig746.15629.1|Name=mRNA_E_fasciculatus_S2_contig746.15629.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6012bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig746:21324..27335+ (Ectocarpus fasciculatus EfasUO2)
TACTAGGGTTAAAGATCGGCCCCCCCGCCCCCAGTGGGCGGTGGGGCCAG
ACTGCGAAGGAGGGTAAATGAAAGTTTTCCGATAGGTCGAGAAGGTGATG
TGAAAGGTGACGATGTCCGTGGTTGCAGAAAGAGGTGGTAGGGTTGTGAT
TGTAATGGGCTCTGTGTTGATAGCGGCATGATGTCACCAACGCACGTAAA
GGTACGGGTTGAAATAATGGGTGTGCAAGATGTGCAGTGGCGAGAAGTCA
CTGAGGTGGAAGGAGCAGGGAGGCCGTAGTCCTGAACACATCTTGCCACA
TCCCTTACAGCCGCGACAACGAAGATAGAGAGGCAACCCAGTAGCACAGC
AACACTACAGATGGAAGGTGAACAGGTAACCGAAGCCAAACGGGCCCGCA
GGCAGACATGTATGTAAGGGAAGAGTAAGGAAAACCACGGGGAATTTGGG
CGAGCAGGGGAACGGCAAGTGTGAGGTGAATAATTTGAATTTGTCTAAGG
GCGCAACTGAAAAACCTCCAAGTACCGGGCACGAAGGAAAAGCTTCGGCA
CCGGAAACAAAGCGGAACGAAGGCAAAAAGGCTACGCCGTGTCAAGGTAC
AAATGTGAAGAAGGCATTACCTACGGACATGGAACGGCAGTAAAGACAAC
AATGGTGCAAAAGGCTACGCCGTAGGAAGGTAGACACCGCGAGAAAGAGT
GCCGGCAATCCGTACGGTGAAGAAGCATAAGGACGCAGAAAAGGCAACGA
AACCGGCGGTGATGCACACAAATGGCCGCATGGGAAAAGGTAGACTAACC
GCGGAAACAGAAAACGGCACGTCGAGGACGACGTGAAATCCGTGCAACAA
TGAGTTCTAGTGCCGGAGGAGGAAGCGCACCGTACTATCGGCGAAATCGT
GAACGAATCATGAAAAGGGCAAGAAAGAACAGTGCAAAAGTGAAAACAGC
ACCCAAGAGAATAGTGACGACGAAAACTCAAGGCAAGTGTGGAAGTACAC
CGATACAAGAAGAACGCACGGCGCATGGGGCAAGAGAAAGGAAGGCCAAG
ATAGAAGATGATGCAACATGATCGAAAACTACTGACAAGGCAAACTCAAG
GCAAGTGAGGAAGGCCCACCGATAGGAAGTAACCGCACCGCGTATGGGGC
AAAAGAAAGAATGGCCAAGGAAGGAGATGAACACGCAAAATGATCGAAAA
GGTACGCAAGAAATATACGGAGTACAAAGTGCCAGGACGTTAACCCCGTT
GAATTTATGACCGATGGAAACATTCCGGCACAACATAATAACGACACCCT
TTTGAAGACGAATGGTATGTGCCGGGATACCGGGCGATAGCAACAAAGTC
AAGTACTCTGACATACAAAAGATAGATGTGATTCGTATAAGCCGCCCAAC
ACAAAATGATGGCGGACGGTGGAAGCAGAGAGAAGCATGGGAAAAAACAC
CGAAAACGAAAGGCAATCGAGGCCATCGAAGGCGCATGACAAACGAAGAA
CCCGTGGTACGCTAGGAGTCAGTACTGGCAAGCAGACACAGGTACACGAC
CAGGGTGGGAAAGCAAGAAGCCAGAAGTTGTTAGTCGCTGTCGTCAGCAT
CGTCGGAGTCAGACTCCTCGTCGATGTCGTCGTCTATGCGATCAGGCGTC
GTCGAGATGATCATGTCAGCAGGCGTACGGACTCGGGACAACCCTACATA
CACGGCCCATGCGCAAATGGGTGGCGAGGCAATGTACCTTGTACAACAGA
AGCACGATGAATGGAAAACGCAATATGTCCGGCGAAAGGCACACATGTCT
ATTCGACAGCCGGTAACAAAGACATGAATACAACATTATGAACCCTGGCA
AATCCGTTATCATCTATGCGATCAGGCGTCGTAAAAATGATCATGTCAGC
AGACTTACGGACTCGGGACAACCCTACATATACGTGCCCATGCGCAAATG
GGTGGCGACTCAAATCGAAACATACACGATCTAAGGTCTGGCCTTGTGCT
CTGTGCACCGTGACAGCAAAACACAGACGCACAGGGAACTGAACCCTTTT
AACAGCTACGCCCTGCCAGGTTACGAACTTAAACGTAATGCGCGGGAGCC
AATGTATGGTACCATCATCGAGCGTTTTCACTTGCAGCGTGTACGCGTTG
ATATCCATAACAAGGACCTTAGACCCGTTCGTTAATTTATCATCGATGGA
AAGGTTCCGGCATAACATAACGACCACACCCTTTTTTAGGCGAATGGTAT
GTGCCGGGATACCGGGCGGTTGCAACAAACTCAAGTAATCAGACATGCAA
AAGACGTCATCCGTATCACCCTCTAGATGCTCATGATCCAGCAAAGTTCG
CCCTTCCAACGTGTGACAAACGTCGGGAATCCGAGTCAAAACTCTGTCGT
TGATGTCGTCAACGGTGTCTTTGTGCAAGGAAATGACGGCGCGCTTGGCA
CAAGCGATGGGATCTTTGAGAACTTCGAGTGGAAATACAAAATCAATGGA
CTTTTCGAGATCCTGTTCTGTTTGTACACCAGAAATCGTTGTGAACCCTT
CCTCGTCGACCGGAGAAACGCCATCGCCGATGTCATCGACCATTTTTGAA
AATGGGGGGTCCTCGCGATTACGCATTGTTTTCGTGAGGCGGAACACCTT
CACCCTGGCACGATAGTAAGAACTGGAGAGGACGGATGCCGCGCACGTAT
CGGCTTCTGCGCCATTGACAACGACGGGAGCCAGCTGCCGTGTGTCTCCT
GCAAGAACTACCACTTTGGTCCCGAACCCTATGTTGAGGAGGAGGAGAGT
AGGCGAAAGGGTGAGATGGCGGTGTTAAGATAGGTGAAGAAGGTGATATG
TGGCGTCATGTTGTGCAGTACAAGCATACGGTAACCGGGGAAAATGTCGG
TCGAAATGATAAAGCACGGTGTCTAGATAGGCAATGCGACGATAACGTCG
TATGTGTGTGGCACCTGTAGTGATGTGAGACTGCATCTCTCCGTCTTGAT
TATGACGCGCAACTGTATCACCTGGAAGGAAAAGAAGGAAGTTCAAAAGC
GGCAAGAACGGGATGAAACACGTAAAGTTACACAAGCGTTGAAACGTTTT
GTGGTATAGGGAATGGTTTTTATTGTACCATATCAAAAAAGGCTCTGGCA
CGACGGGCTGAAATACATTAATATACACAAGCGTTGAAGCGTTTTGTTGT
ATAGTCTACAGGTATTGGTTTTTATTGTACCATATCGAAAAAGACGCTGG
CATGATGGCAAAAGAAAATGATGATTTGGAGACGAATATGTTGACGAATG
GGCTCTCACTGGTGCTGTGTGTTTGATGTTGCGCGTTGAACGTGTCGTAG
GTGTCCTCTTGGCCAGTCGTGTTGAACATGAAATCTGCATGAATGACGTG
ATGGAGGTACGGGAAGTTGTAAAGGAAGCGAAGAGAATGGACAAACGTGA
ACGGGCGTACAATGTGGGAACGTGTACCTCACCGTGATTTGCTGGCGACC
CTTCGGCATTGAACATGTCGTGCATGTCTTGTTCCTCGTCCCTGCGGAAA
ATGTATTCTGGAAAGACGTTGCAGGGCAGAAAGTGTGCAAGGAATGCCGA
CGGTAAAAGATCATGATAATTGATAGGGCAGATGTCGTGCACAGTAACTT
TGTTGCAGGAGACATGTGACGGTTTGGGAAGGTGCGGACAGTGTGTATGC
AAAGGTTTCCGTGTTATACAAAGTTGGACGTTTAGGGGCAAAAAGACATC
CCCACGAAGAACAGGGGCTATGAATTTGCGTTACCTTGGATATCTTCATC
AGTGTCGTAGGAAGAACTCGGCGAAGACCGATGCGGCGTGTCGTCGGGGG
CTGATGGGGTGGTGGGCTCGGAGTCGACACGAGCACCGGCTTCGTAAGCA
GCGATATGGAGGGAAGAAATCTCGTCGATGGTGCATAATTTTGTGTTGGC
CATGAGTTCCGCGCGCTTGCCGGTGCCGAGGTTTGATTGTAAGACGGAGT
CGTCGCGTGGGTCAGGAACAGGAACGTCAAAAGTCCTATGGAATGTAAGA
CCAAATGTCTGGTTCAAGGCCGCCAATCCGGTTGACGCCGTAGGAGCGGT
GAGGTGGCCGTTAAGCCTGGCTTGAGCTCCGATGGCGTTCAAGAGGAGGG
TTTTACCGCACCCGGCCCGTCCTTGTATGTCGAAAATAGCACCCTCTGCT
TTGTTGCACGCGTCTTGGACCGCGTCAAATATGGCACGTTGTTCGTCAGT
AAAAATGTCGAGCGCTTCCTCAACGGTAGCGATGTCGATTTCCTTTTGCT
CCGCAATAAACTGCTTCGCTCGAGCACGCTGGTGTTCAGAATCGGTCGTG
TCGAATCCGGGAGGGACGTCGATACCCAACTGGCTGAGGGACTTGCAACC
CTCCGCGTTCAAACGAGCTTGTAGGCATTCGAACAACTTGAGCTTCTGAG
TGATGATGTTGTTATTCGTCTTCCAGGAGTCCTCCATGAAATGCTTGTAG
TACTGATCGAAAGCGATGGCAACTGGATACCCGCTTTTGATTAGGAACAT
GAAAAGCCGGCGTAGTTGCCGCGGCGATGCGTGACATTGGACGGCTTCTT
CCAAAGCGTATGTCGATTCGCTGACGAGTGGGTTGCTCAGGTGCCCGGCA
GCGACTGCTGCGGCTTTGTTCGTCTCGAATTCCTGCCCGTTGACGATGCG
GGCTTCTCGGAATGAACGAGGCGTGGCGCCTTTTTTGAGCAGTAGCCACA
AGTAGAAAATCTCGCCTTGAGTGACGTTAGGCGAACCGAGGAAATATATC
TTGGATACCTACGGTGTAAATGGGGAAGAAATGATATTGCACGAGGAAGT
TGTCAATGTCTGCTGTGCAGGAAAAAGTTACCAACATTGTGGGGTCAACA
TTTTCGCGAAGGACACGAAAGGGATGTGCTGCAAAAACGGCATGCATTCT
CCCTCGGCTGATGATATCATGATGCCATGGAAGGCAGAAGGAAGATAGAT
ACGCAGGACACGTACGTTGAGTCCTTGTTGCAGTAACCAAACGAATACGA
CAGGTGAAAAGTAATGGGGTTGCCGACCGACGTACGGTGAAGTCGGAATT
GTCTCTGGGAAGGTAGATGCAAGGGCGTAAAAAACGTGGCACATTATTGT
TATGTTCGATGAAGGACGCTTGGACGTACGTAAATGAAAACGTAGGAAGG
GAGAAAATTCGGAGCAAAGTGGAAACTCACATTCCGTGTAGGGCGTCTGC
GATAGACCTGAAGGCTGTTGGAGTCGTCGTCCCATTGTTTTTCTTGCCAA
CGCTCGGTAGCATACTGCGGCGGAGTCTTCGAAGAAGCAAATTGGGAGTG
ATACGTGACGATGTCGATGTCATCGAAGAGCCGCGCAAGAGGTCGATGGA
AATAACGCTCGAGGTTGGTGGGCTTGGGAACGGTTCCATCCTTCCGAGTT
TGTTAAGGTGTTCTCTCCGAGTGTAGGTAAAGGCCTGGTGATTTGAGAAG
GGGATACAGGAAGAGGAAAAGTTAACACGGCAAGAATGTAGTGTCGAAAG
CAGGAAATTGGAGAATGAACGTTGTTAGACGGAGGAACGAGCAAAAATAT
GATGTGGGTGTATGGGGGTAGGCACCTTCAGCTGCTGGCGTGCGGAAGCT
CATCTGTTTGATGATGCTTCTCCAAGCGGCTTCGGTTGCAGTCAGGCACC
GCAGAGATTTCCACTGCTTGATGGTATCGATGGATTCGTCGGAGGCTTCT
GTAATAGCAAAAGAAGACCTGTCAGGCCCCTTGTAAATGTACCTGTTAGA
GGGCATAGTATTCGCGGAGGAATTGCGCGGCGGAATGTGAGGGAAGCGCA
AAGAGGGGTGGAAGGAAAGAGGGAAGGACATATTACGAGGTGTAGACGCC
ATGTATTGATGCGATAATGCGAGTTAGATGTCCAACAAGTCGCGCGAACA
GATACGACATGTATTACTGTAATGCCATTATGCGAGGTTGACGCCCATGT
ACTCACGCAAAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig746:21324..27335+

>mRNA_E_fasciculatus_S2_contig746.15629.1 ID=mRNA_E_fasciculatus_S2_contig746.15629.1|Name=mRNA_E_fasciculatus_S2_contig746.15629.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=306bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig746:21324..27335+ (Ectocarpus fasciculatus EfasUO2)
ATGGGGGTAGGCACCTTCAGCTGCTGGCGTGCGGAAGCTCATCTGTTTGA
TGATGCTTCTCCAAGCGGCTTCGGTTGCAGTCAGGCACCGCAGAGATTTC
CACTGCTTGATGGTATCGATGGATTCGTCGGAGGCTTCTGTAATAGCAAA
AGAAGACCTGTCAGGCCCCTTGTAAATGTACCTGTTAGAGGGCATAGTAT
TCGCGGAGGAATTGCGCGGCGGAATGTGAGGGAAGCGCAAAGAGGGGTGG
AAGGAAAGAGGGAAGGACATATTACGAGGTGTAGACGCCATGTATTGATG
CGATAA
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