mRNA_E_fasciculatus_S2_contig7456.15626.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7456.15626.1
Unique NamemRNA_E_fasciculatus_S2_contig7456.15626.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7456.15626.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8T1_ECTSI)

HSP 1 Score: 385 bits (988), Expect = 2.670e-134
Identity = 187/215 (86.98%), Postives = 199/215 (92.56%), Query Frame = 1 
Query:    1 TDVLYTMM-KSGKAMVHKGDKHADKAVGLVESAQEVRDLCRAAGLSQKNVKHAFKSIVGGGASAFAAHRHGSHEEKEQLLAMMSGPGSNALRVRGFSILPYTEHVKRVSRRHDNPDSRIEAMEAVVTTVKGAYYPHQINVAAWDVGLGMEEPECYGMAESGTAKSPEGLAYRYAVFRGQGVIKWKGGLQTGVPDVCCTGNLNMGPDSVWFSQILY 642
            T  L TMM KSGKAM+ KG KH+DKAVGLVE AQEVRDLCRAAGL  K+VKHAFKS+VGGG +AFA+HRH SHEEKEQ+LAMMSGPGSN LRVRGFSILP+ EHVKRVSRRHDNPDSRIEAMEAVVT+VKGAYYPH+INVAAWDVGLGMEEPE Y M ESGTAK+P+GLAYRYAVFRGQGVIKWKGGLQTGVPDVCCTGNLNMGPDSVWFSQILY
Sbjct:   14 TSSLSTMMHKSGKAMIQKGAKHSDKAVGLVEGAQEVRDLCRAAGLHHKDVKHAFKSVVGGGVAAFASHRHSSHEEKEQMLAMMSGPGSNVLRVRGFSILPFKEHVKRVSRRHDNPDSRIEAMEAVVTSVKGAYYPHKINVAAWDVGLGMEEPELYDMVESGTAKNPDGLAYRYAVFRGQGVIKWKGGLQTGVPDVCCTGNLNMGPDSVWFSQILY 228
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BLAST of mRNA_E_fasciculatus_S2_contig7456.15626.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ4_9PHAE)

HSP 1 Score: 374 bits (960), Expect = 2.430e-130
Identity = 178/208 (85.58%), Postives = 196/208 (94.23%), Query Frame = 1 
Query:   19 MMKSGKAMVHKGDKHADKAVGLVESAQEVRDLCRAAGLSQKNVKHAFKSIVGGGASAFAAHRHGSHEEKEQLLAMMSGPGSNALRVRGFSILPYTEHVKRVSRRHDNPDSRIEAMEAVVTTVKGAYYPHQINVAAWDVGLGMEEPECYGMAESGTAKSPEGLAYRYAVFRGQGVIKWKGGLQTGVPDVCCTGNLNMGPDSVWFSQILY 642
            M KSGKA++HKGDKHADKAV LVE AQEVR+LCR AGL+ KNVK+AFK++VGGG  AFA+HRH +HEE EQ+LAMMSGPGSNALRVRGFSILP+ EHVKRVSRR+DNPDSRIEAMEAVVT+VKGAYYP+Q+NVAAWDVGLGMEEPECY M ESGTAK+P+GLAYRYAVFRGQGVIKWKGGLQTGVPDVCCTGNLNMGPDSVWF+QILY
Sbjct:    2 MHKSGKALIHKGDKHADKAVSLVEGAQEVRELCRTAGLNHKNVKNAFKAVVGGGVLAFASHRHSTHEE-EQILAMMSGPGSNALRVRGFSILPFKEHVKRVSRRYDNPDSRIEAMEAVVTSVKGAYYPYQVNVAAWDVGLGMEEPECYDMVESGTAKNPDGLAYRYAVFRGQGVIKWKGGLQTGVPDVCCTGNLNMGPDSVWFNQILY 208
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7456.15626.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.670e-13486.98protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.430e-13085.58protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7456contigE_fasciculatus_S2_contig7456:563..2785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size645
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_011060.1
Cds size627
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842408.0588257-CDS-E_fasciculatus_S2_contig7456:562..6541696842408.0588257-CDS-E_fasciculatus_S2_contig7456:562..654Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7456 563..654 -
1696842408.0717225-CDS-E_fasciculatus_S2_contig7456:1345..16521696842408.0717225-CDS-E_fasciculatus_S2_contig7456:1345..1652Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7456 1346..1652 -
1696842408.0824103-CDS-E_fasciculatus_S2_contig7456:2539..27671696842408.0824103-CDS-E_fasciculatus_S2_contig7456:2539..2767Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7456 2540..2767 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842408.0931275-UTR-E_fasciculatus_S2_contig7456:2767..27851696842408.0931275-UTR-E_fasciculatus_S2_contig7456:2767..2785Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7456 2768..2785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7456.15626.1prot_E_fasciculatus_S2_contig7456.15626.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7456 563..2767 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7456.15626.1

>prot_E_fasciculatus_S2_contig7456.15626.1 ID=prot_E_fasciculatus_S2_contig7456.15626.1|Name=mRNA_E_fasciculatus_S2_contig7456.15626.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=209bp
MMKSGKAMVHKGDKHADKAVGLVESAQEVRDLCRAAGLSQKNVKHAFKSI
VGGGASAFAAHRHGSHEEKEQLLAMMSGPGSNALRVRGFSILPYTEHVKR
VSRRHDNPDSRIEAMEAVVTTVKGAYYPHQINVAAWDVGLGMEEPECYGM
AESGTAKSPEGLAYRYAVFRGQGVIKWKGGLQTGVPDVCCTGNLNMGPDS
VWFSQILY*
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mRNA from alignment at E_fasciculatus_S2_contig7456:563..2785-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7456.15626.1 ID=mRNA_E_fasciculatus_S2_contig7456.15626.1|Name=mRNA_E_fasciculatus_S2_contig7456.15626.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2223bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7456:563..2785- (Ectocarpus fasciculatus EfasUO2)
ACGGACGTCTTGTACACGATGATGAAGAGTGGCAAGGCAATGGTCCACAA
GGGCGATAAGCATGCCGACAAGGCTGTGGGGCTGGTGGAAAGCGCCCAAG
AGGTCCGCGACCTGTGCCGCGCCGCCGGACTGAGCCAGAAGAACGTCAAG
CACGCCTTCAAGTCCATCGTGGGCGGCGGAGCGTCGGCGTTCGCGGCCCA
CCGCCACGGCAGCCACGAGGAGAAGGAACAGCTGCTAGCTATGATGGTGC
GCGTGCGTTTTTGTGTCTGTCTGCGACGCAATTTGGTAGCTAACTGTGAC
TTTGCTTTTATCTAGTTTTTAGACAATACATGTACAACCCGTTTGAGATG
TAACCACAGCAGTCGAACGGGGATGTGTTGAAGTCTTGACGGTTTGTGGA
AGAAAAAACGGCTGGATGCTTATCTCCTTCTGCCAGAGACACTGGTGCTT
GGTTTCGCGTCTGCTTCGTATCTATCTCCTTCAGCCAGAAACAGTACGAG
GAGGATAAAAGTTGAATCACCGGAAACGTAGTCAGTACTCGATGAATCAT
TTATTATCCAATGCAGGCGGGTTTGTTTTTGAGTGACGGGAGAAAACTGT
ACCATGAAAGTATCACCTGTCCTGTGCTCTTTCTTGCCCGGGGATGGAAG
CGGACTACTGTAATTTGTTTTTGATATCGTGAGAAACCTGTAGAAGCATG
CATCTAATCTACTGTATATCTGAAATGGCACGGCACGTCGATGATATCGG
AGGTACCAAACCATGTTGCGTTGAACCACAAACTGTTCTTCGTACTACTT
TACTATCTCTGCGTGCGAAGGCGGTCTGACCGCTCACCGAAATCAATTCA
CCAGGAAAATCGCGTCCTTCATGCCATCGGCCATTGCAGCGTACTCAGCT
TCCGCAGAAGACAGCGTGACACTCTTATGAGTCCGAGAGAAAAACGACAC
GCAGGAACCCGCACACACGACAACACCTCCCGACACCGACCTCCGGTCGG
TCACCTTGCTAGCGTAGTCCGAATCCACATACACCTCCAAGCTAACACCG
CCTTCCGTACCCCGTTGAAATGTAATACCGACGTTCGCCCTGTACCTATT
TTTTTGCCCGCGTGTCGGAACGACAACCACCAGAGCGGGCCGGGGTCGAA
CGCGCTAAGGGTCCGCGGCTTCAGCATCTTGCCCTACACGGAGCACGTGA
AGCGGGTTTCCCGGCGCCATGACAACCCCGACTCCCGCATAGAAGCGATG
GAGGCGGTGGTGACGACCGTGAAGGGAGCCTACTACCCCCACCAGATCAA
CGTCGCGGCCTGGGACGTCGGCCTGGGCATGGAGGAGCCCGAGTGCTACG
GCATGGCGGAGAGCGGCACCGCGAAGAGCCCGGAGGGCCTCGCGTACCGG
TACGCCGTGTTCAGGGGCCAAGGCGTCATCAAGTGGAAAGGTGAGCTCTA
GGCAGGAAGTACGGCAGTTGCGACGTACAAGGGGACCAGAAGTCGTGGTG
ACGTCATATACGTATGACGTACCGCGAGCGAGTCGAAACCCGTACCGCAT
CCTCGGCCGGCCTCGTGGGAATTTGAAGTCTGGTACATATCTGTCTCGAC
AGCCAAGGGAGGACTGCCAGCAGGGTTAATTGGCAAACCGAAGCGCTGGT
GGGTGGGGCACCACACATGGTCTGAAACGTCTCGAGCACGGTGTCTTTTC
GATGCCTCCCCTTATCCGCGGTATAGTTTGCGCGTTTCCAGCCGTGAAGA
CACGCGTACGCTTGGATAGCCGACGAAGCCGATGTGCATGGGGGTGTGTC
CCACGAGTCTTATCACGGGATGCGGCACGCGGTTGGCCTCTTCCGATCCT
TATCGCAAGCAATTTCCGCTCTCGGTGAAGATAAGTCGGTCCACATTGTT
GAGCGATTAAACGCATGGTTAATGTTCAAGCGGTGATTTTGACCGCGCTG
ATTTACCTTTTTTTGGTCAGTGTCGCTTACAGAAACTCGCGTCTCATCGC
AATGTTCCACGGGTGCCGTTCCGTTGCCCCTCTTCTGATCCAGCGTATCA
TTTCTCACCGCTGTCGCTGTCGCTCTTCACCTTTCCCCGTCCCATACCTT
GCACAAACGATTCACACCCCGGCGACGACAGGGGGCCTCCAGACCGGTGT
CCCCGACGTGTGCTGTACAGGAAACCTCAACATGGGCCCCGACAGCGTCT
GGTTCAGCCAAATCCTTTACTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7456:563..2785-

>mRNA_E_fasciculatus_S2_contig7456.15626.1 ID=mRNA_E_fasciculatus_S2_contig7456.15626.1|Name=mRNA_E_fasciculatus_S2_contig7456.15626.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=627bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7456:563..2785- (Ectocarpus fasciculatus EfasUO2)
ATGATGAAGAGTGGCAAGGCAATGGTCCACAAGGGCGATAAGCATGCCGA
CAAGGCTGTGGGGCTGGTGGAAAGCGCCCAAGAGGTCCGCGACCTGTGCC
GCGCCGCCGGACTGAGCCAGAAGAACGTCAAGCACGCCTTCAAGTCCATC
GTGGGCGGCGGAGCGTCGGCGTTCGCGGCCCACCGCCACGGCAGCCACGA
GGAGAAGGAACAGCTGCTAGCTATGATGAGCGGGCCGGGGTCGAACGCGC
TAAGGGTCCGCGGCTTCAGCATCTTGCCCTACACGGAGCACGTGAAGCGG
GTTTCCCGGCGCCATGACAACCCCGACTCCCGCATAGAAGCGATGGAGGC
GGTGGTGACGACCGTGAAGGGAGCCTACTACCCCCACCAGATCAACGTCG
CGGCCTGGGACGTCGGCCTGGGCATGGAGGAGCCCGAGTGCTACGGCATG
GCGGAGAGCGGCACCGCGAAGAGCCCGGAGGGCCTCGCGTACCGGTACGC
CGTGTTCAGGGGCCAAGGCGTCATCAAGTGGAAAGGGGGCCTCCAGACCG
GTGTCCCCGACGTGTGCTGTACAGGAAACCTCAACATGGGCCCCGACAGC
GTCTGGTTCAGCCAAATCCTTTACTGA
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