mRNA_E_fasciculatus_S2_contig7450.15625.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7450.15625.1
Unique NamemRNA_E_fasciculatus_S2_contig7450.15625.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7450.15625.1 vs.
Match: Endo/exonuclease/phosphatase (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K8_9PHAE)

HSP 1 Score: 315 bits (806), Expect = 3.280e-102
Identity = 210/364 (57.69%), Postives = 228/364 (62.64%), Query Frame = 1 
Query:  226 MGVATVVNVHLGNEGDTEKQVTGLLSLLEDLRAGDRRTRGVRXXXXXXXXXXTQEDVRRQQQRIPQTGNQRRRGLRRGQGXXXXXXXXXXXEGEDLPFRGLDEDRRLLIVIGDFNFESTSSGYRRMVSEGGLQSAANISTEAAAAESTDWYSPATAPNXXXXXXXXXXXXXXXXGMVPKNFYYTAPNLADDGVVPEKREVLPRIPGHGGAA-------AGRVASDPHGDDALGAGSSGGGSVVDDIVSDDGDVVGGVSARGGGDGNGRAXXXXXXXXXXXXXXXXXXDGEGGNEIGDTVVAGGTADNSGALDFVFLATEGGGSGGGGISCRSYEVHREFSQERYADGYPSVAEFEVSCPSLAVE 1296
            MGVATVVNVHLGNEGDTEKQVTGLLSLLEDLRAG+ RTR +R           + D  R+ Q +P+T NQRRR LRR              +GEDL  RGLDEDRRLLIV+GDFNFESTSSGYRRMVSEGGLQSAAN+S EAA AE+T W+ PATA N                   P   Y+ AP LADDGVVP+KREVL  + G G AA       AG V +D H +DALG G SG G VVDD   DDGDVVGGVSA        R                            DT VAG  ADN GALDFVF +     +GGGGISCRSYEVHREFSQERYADGYPSVAEFEVSCP LA E
Sbjct:    1 MGVATVVNVHLGNEGDTEKQVTGLLSLLEDLRAGNLRTRDLR-----------ERDGIRRDQHMPKTSNQRRRKLRR-------------KKGEDLAVRGLDEDRRLLIVVGDFNFESTSSGYRRMVSEGGLQSAANVSAEAAEAEATGWFPPATASNFPAIIPNY-----------PVKVYHPAPKLADDGVVPDKREVLRSLVGDGAAAVNASEGVAGGVENDGHRNDALGVG-SGSGGVVDDF--DDGDVVGGVSAM-------RV---------------------------DTFVAG-DADNRGALDFVFFS-----AGGGGISCRSYEVHREFSQERYADGYPSVAEFEVSCPPLAPE 286
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BLAST of mRNA_E_fasciculatus_S2_contig7450.15625.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ1_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 1.320e-54
Identity = 93/96 (96.88%), Postives = 94/96 (97.92%), Query Frame = 1 
Query:    1 ETGLMRLTLGNRHYAGAVARASGMVLAAAAPVAEDTWGCAILSRLPVLSWGWRRLPRGPGENACEVHATLSLGEGMGVATVVNVHLGNEGDTEKQV 288
            ETGLMRLTLGNRHYAGAVARA+GMVLAAAAPVAEDTWGCAILSRLPVLSWGWRRLPRGPGENAC VHATLSLG GMGVATVVNVHLGNEGDTEKQV
Sbjct:   53 ETGLMRLTLGNRHYAGAVARAAGMVLAAAAPVAEDTWGCAILSRLPVLSWGWRRLPRGPGENACVVHATLSLGGGMGVATVVNVHLGNEGDTEKQV 148
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7450.15625.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Endo/exonuclease/phosphatase3.280e-10257.69domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized1.320e-5496.88protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7450contigE_fasciculatus_S2_contig7450:113..4043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1317
Hectar predicted targeting categoryother localisation
Exons3
Cds size1305
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842407.9860072-UTR-E_fasciculatus_S2_contig7450:112..1241696842407.9860072-UTR-E_fasciculatus_S2_contig7450:112..124Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7450 113..124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842408.0018926-CDS-E_fasciculatus_S2_contig7450:124..2581696842408.0018926-CDS-E_fasciculatus_S2_contig7450:124..258Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7450 125..258 +
1696842408.0111938-CDS-E_fasciculatus_S2_contig7450:1413..15521696842408.0111938-CDS-E_fasciculatus_S2_contig7450:1413..1552Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7450 1414..1552 +
1696842408.019818-CDS-E_fasciculatus_S2_contig7450:3011..40431696842408.019818-CDS-E_fasciculatus_S2_contig7450:3011..4043Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7450 3012..4043 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7450.15625.1prot_E_fasciculatus_S2_contig7450.15625.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7450 125..4043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7450.15625.1

>prot_E_fasciculatus_S2_contig7450.15625.1 ID=prot_E_fasciculatus_S2_contig7450.15625.1|Name=mRNA_E_fasciculatus_S2_contig7450.15625.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=435bp
MRLTLGNRHYAGAVARASGMVLAAAAPVAEDTWGCAILSRLPVLSWGWRR
LPRGPGENACEVHATLSLGEGMGVATVVNVHLGNEGDTEKQVTGLLSLLE
DLRAGDRRTRGVRTKDLRKRDLRTQEDVRRQQQRIPQTGNQRRRGLRRGQ
GEEEEEEEEEEKEGEDLPFRGLDEDRRLLIVIGDFNFESTSSGYRRMVSE
GGLQSAANISTEAAAAESTDWYSPATAPNSPATTPDYPAMGSTFPGMVPK
NFYYTAPNLADDGVVPEKREVLPRIPGHGGAAAGRVASDPHGDDALGAGS
SGGGSVVDDIVSDDGDVVGGVSARGGGDGNGRAGGDGGAGAAGVAGGAAA
ADGEGGNEIGDTVVAGGTADNSGALDFVFLATEGGGSGGGGISCRSYEVH
REFSQERYADGYPSVAEFEVSCPSLAVERDQREA*
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mRNA from alignment at E_fasciculatus_S2_contig7450:113..4043+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7450.15625.1 ID=mRNA_E_fasciculatus_S2_contig7450.15625.1|Name=mRNA_E_fasciculatus_S2_contig7450.15625.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3931bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7450:113..4043+ (Ectocarpus fasciculatus EfasUO2)
GAAACCGGGCTGATGCGATTGACCCTGGGCAACCGGCACTACGCCGGGGC
GGTGGCGAGGGCGTCGGGGATGGTTCTGGCAGCGGCCGCTCCCGTGGCGG
AGGACACCTGGGGCTGCGCGATCTTGTCCCGCCTGCCGGTGCTCAGGTAC
ACACTCAGAGTATATCACGTGCGTTTTTATTGTTTTTTTTTCAAGCTTCG
TTGGCCGTTTGTTTTGCACGTTGTGTGTGTGTGCTGGTGCGCAGGGGCGC
ATTCAGATGAGGCAGTTGCAGTTCAGCCATTCATTTCAGTGTGTTGTCTC
TTCTCGTTAGTTGAAGGCTATCTATTAGGATAGACACTTTTTGTAATATT
TCTGATCTTGTCCCGCCTGCCGGCGCTCAGGTGGGCACTCAGATGACTGA
AGCAAAAGCAAAGCAGTCATACACGTTTTTTTTTGTTTTATTTCACGTTT
CGTGAGCCGTTTTTATGTACTTTTGTTTTGGTGTGTGGTGTGCTGGTGCT
CAGGTGCGCACTTTGATGGGGCAGTCAAATCGGTCATTGCTCATGCAGTG
TGGTCTCTTTCCTTGTGAGATACAGGCTTGTCCATTAGACTACTGTCAGC
GAGGCCTATCCGTTAGACTAGTAGTTCAGTGCTTGCCGCGTCTTCCGGTG
CTCAGATGGGCCCACAGATGAGGCAGTCGAGTCGGCCATGCAGTGTGTGC
CTTCTACACGTTTTTTTTTTTTATTGCATGTGCAGTGGGCCGTTGTTTTT
TCGTATAGTTTGTGAGAGTGTGTGGTTTTAGGCCGTGTGTGCGTTGCCAA
CAAACGACAACTTGTATGCGTAAGAGCCGATGAAATACCAACACATACAC
AGGTATGGTATGATAAAGCAGTCGTGGTTTCTCTCTCGTTGTGCGTGCTT
GTGTCCGTTTTTTGTTGCACGGTTCGACTGCGCGTCCCGTACATACAACA
CAGGATATCACACTCACATAAGATAACACCCCCGCCCCACGGTGTAAACA
CCCGAAACATACATATGTTTTCAAGCCAAAAAGGTATTCCCGGGACGCGT
TTTCTTGCGTCGTATACGGTATTCCAGTTAGCCCGTGAAGAACCAAACGG
TTGCCGCGTTGCACGGACAGCCCTGCCGTCGAATAAATTACGCTGCTCGG
TTCACAGTTGCTGGAAAATGCCCGAAAACAACATTGCCCCGCTCCTACTA
TCTTAGTTTTCGATGTTCTTGCCGCGTGGGTGGTGGAATGATATATGTAC
TTCGTATATTATAGTATTTTTATTTTTTATCCCATACGTACTTTTTTGCA
GCTGGGGGTGGAGAAGGCTGCCTAGGGGCCCCGGGGAGAACGCCTGCGAG
GTTCACGCCACCCTGTCGCTGGGGGAGGGGATGGGGGTCGCGACCGTGGT
GAACGTGCACCTCGGCAACGAAGGCGACACCGAGAAACAGGTGAGATGTT
TGCATGTACATCACAAAACTGGTGTGTTCGTTTTGGAAACATCTCGTCGA
AGGCTTTCCCTAGACGTATCGGGTTCTTTCCGCACCCCCTTGGCTGTGGA
GCAATTCAGCTTTGAAAGTCGCTCTGAGGGGGGGGGGGGGGGGGGTACTC
TTATGCTTTGCATGCCTTCGTCGTTAGACCATTGACCACGCGTCCTCGAC
AGGACGTAGCATTGTTCCCACAGGATCGATCACAGATGGCCAATCGTTCC
TTCCTACTTTGCCAAAGGTGGCTCAAACGTGTCTTCCCCAGTATACCTAT
CCTACCAATATCCCTTCCCGCCTTTTCCACCCACTTGCCCAGTACAGCTA
CCGTCTTGTGCTCCCTGGTCCATGCCTCAAACACCTCCCTGTACCTTCTG
TGTATTTTCCCATTTCAGCCATGCACACTTCCCTCTCCTTCTTGTGCAGC
GAGCATTCCGCAACTACATGAACACGGTCTTCGCACTCCCAGCCGCAATC
ACACTTGAAGTTGTCGTCTTCATCGACTACAGTCCTACATCTTCGTCCAC
GCGCTCTAGGGGGAGGGAGTGCCATCTCTCTACCTCTTGCGGTACTTTCC
ACGGCAGAATGAGCGGCAGTATCCTCGTAAAACGCGGCGTTGGATCTCGT
CGACAGCTTTCCGACAACGTAAACATCGTTTCATTTGCGCATCATCTTCA
AAGTGGAGCAACAATCGAGCTTTGGGTATCTGATGTCGCCTACGGTATGC
GAGCGGCTTCTCTAACTCGGGGTTGAGGTGGTGCCCAATCCCCTTCTCCG
GACGGATGCTTGGTACAGCCATCAACAGCCTTCAAGTATATAGCAAGTCG
CAAGTGAGGGTGATCATCCTCCGCCCCCCGACCTACACCGTCTGAAGACT
GTACGCGACCATGCGGGGAACTTTGTGCCCCCCCCACTCCGGACGATTGG
CCATCGATGATCGGTCCTGTGTGGCACAATGCCTCGTCTTCTCGAGGACG
CGTGGTCAAAGGTCCAAGAAACAGCTATGGCATGAAAAAGCATGAGTCCG
TAGTAGTCGGACAGATGGCACCCCCGTGTTAAATAGCGTTTTTTTGTAGC
GTATTTCTCCACAAGTAGGAAGGTGCGAACACCAACCGATACTCTCAGGA
AAGCCCTGGACGAGATATTTCCAAAACTACCCTTTTCGGCAGTGGTACCC
CCCTGGTTGTGGAGCAATACGCATTTAAAAACGCCAACACGGGGGTGCCA
TCGCTCCGGCTATTACGGTACGCCCCTCCCACCAGTCGTAAGCTTCTTCT
TTTCACGGCCGAGTCAGGCCAACAACAACTATGCCGCCAAACAAGGATAC
CTCCGCACTCATCCCCCAAACAACCGCACCCCCCCGCGTATCCACATTCG
TCCCCCTCCGCTCCCTACTTCGTCGTGTTCCCCGTTGGTCTTTTCTTAGG
TGACGGGTCTCCTGTCGCTGCTTGAGGATCTCCGCGCAGGAGATCGACGA
ACGAGAGGTGTACGAACGAAGGATCTACGCAAGAGAGATCTGCGAACGCA
AGAAGACGTCCGCAGACAGCAGCAACGTATCCCGCAGACAGGCAACCAGC
GGCGGCGGGGTCTCCGAAGAGGGCAAGGAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAAAAGAAGGAGAAGATCTCCCGTTCCGCGGCTTGGACGAAGA
TCGAAGATTGCTGATCGTCATCGGAGACTTCAACTTCGAGTCCACCTCGT
CCGGGTACAGGCGCATGGTGTCCGAGGGCGGTCTTCAATCTGCCGCAAAC
ATTTCCACCGAAGCCGCAGCAGCAGAATCAACAGACTGGTATTCCCCCGC
AACGGCTCCCAATTCACCCGCAACGACGCCTGACTACCCCGCAATGGGTT
CTACTTTCCCCGGAATGGTTCCGAAAAATTTCTATTACACCGCACCGAAT
CTAGCGGACGATGGCGTCGTCCCCGAGAAACGCGAGGTGCTTCCACGCAT
TCCCGGTCACGGCGGTGCTGCCGCTGGTAGGGTTGCAAGCGATCCTCACG
GCGATGATGCTCTAGGTGCTGGTAGTAGTGGTGGTGGCAGTGTTGTCGAC
GACATCGTCAGCGATGATGGAGATGTTGTCGGCGGCGTTTCAGCTCGCGG
CGGCGGCGATGGAAACGGCAGAGCTGGTGGTGATGGTGGTGCTGGTGCTG
CTGGTGTCGCTGGTGGTGCTGCTGCTGCTGATGGCGAGGGCGGCAATGAG
ATTGGTGACACCGTTGTTGCCGGAGGCACTGCTGACAACAGCGGCGCCCT
AGATTTCGTGTTTTTGGCCACCGAAGGCGGCGGCAGCGGCGGCGGCGGGA
TCTCGTGCCGGAGCTACGAGGTCCACCGAGAATTTTCCCAGGAACGGTAC
GCGGACGGGTATCCTTCCGTCGCCGAGTTCGAGGTCTCGTGCCCCTCACT
GGCGGTGGAGCGCGATCAGCGCGAAGCCTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7450:113..4043+

>mRNA_E_fasciculatus_S2_contig7450.15625.1 ID=mRNA_E_fasciculatus_S2_contig7450.15625.1|Name=mRNA_E_fasciculatus_S2_contig7450.15625.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1305bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7450:113..4043+ (Ectocarpus fasciculatus EfasUO2)
ATGCGATTGACCCTGGGCAACCGGCACTACGCCGGGGCGGTGGCGAGGGC
GTCGGGGATGGTTCTGGCAGCGGCCGCTCCCGTGGCGGAGGACACCTGGG
GCTGCGCGATCTTGTCCCGCCTGCCGGTGCTCAGCTGGGGGTGGAGAAGG
CTGCCTAGGGGCCCCGGGGAGAACGCCTGCGAGGTTCACGCCACCCTGTC
GCTGGGGGAGGGGATGGGGGTCGCGACCGTGGTGAACGTGCACCTCGGCA
ACGAAGGCGACACCGAGAAACAGGTGACGGGTCTCCTGTCGCTGCTTGAG
GATCTCCGCGCAGGAGATCGACGAACGAGAGGTGTACGAACGAAGGATCT
ACGCAAGAGAGATCTGCGAACGCAAGAAGACGTCCGCAGACAGCAGCAAC
GTATCCCGCAGACAGGCAACCAGCGGCGGCGGGGTCTCCGAAGAGGGCAA
GGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGGAGAAGATCT
CCCGTTCCGCGGCTTGGACGAAGATCGAAGATTGCTGATCGTCATCGGAG
ACTTCAACTTCGAGTCCACCTCGTCCGGGTACAGGCGCATGGTGTCCGAG
GGCGGTCTTCAATCTGCCGCAAACATTTCCACCGAAGCCGCAGCAGCAGA
ATCAACAGACTGGTATTCCCCCGCAACGGCTCCCAATTCACCCGCAACGA
CGCCTGACTACCCCGCAATGGGTTCTACTTTCCCCGGAATGGTTCCGAAA
AATTTCTATTACACCGCACCGAATCTAGCGGACGATGGCGTCGTCCCCGA
GAAACGCGAGGTGCTTCCACGCATTCCCGGTCACGGCGGTGCTGCCGCTG
GTAGGGTTGCAAGCGATCCTCACGGCGATGATGCTCTAGGTGCTGGTAGT
AGTGGTGGTGGCAGTGTTGTCGACGACATCGTCAGCGATGATGGAGATGT
TGTCGGCGGCGTTTCAGCTCGCGGCGGCGGCGATGGAAACGGCAGAGCTG
GTGGTGATGGTGGTGCTGGTGCTGCTGGTGTCGCTGGTGGTGCTGCTGCT
GCTGATGGCGAGGGCGGCAATGAGATTGGTGACACCGTTGTTGCCGGAGG
CACTGCTGACAACAGCGGCGCCCTAGATTTCGTGTTTTTGGCCACCGAAG
GCGGCGGCAGCGGCGGCGGCGGGATCTCGTGCCGGAGCTACGAGGTCCAC
CGAGAATTTTCCCAGGAACGGTACGCGGACGGGTATCCTTCCGTCGCCGA
GTTCGAGGTCTCGTGCCCCTCACTGGCGGTGGAGCGCGATCAGCGCGAAG
CCTAA
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