mRNA_E_fasciculatus_S2_contig7445.15620.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7445.15620.1 vs.
Match: RuBisCo_chap_C (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR7_9PHAE) HSP 1 Score: 224 bits (571), Expect = 1.520e-72 Identity = 106/113 (93.81%), Postives = 109/113 (96.46%), Query Frame = 1
Query: 1 PPMPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEMLLVIDRANREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVGVVLAPFLPSMAKKSSGFEEEEY 339
P PQLGTVAVPGGEQVF MKEPVAIVCPNDDLNIQMPNDEK EMLLVIDRANREFEFGKFFLWDTPS+GLVVRYFEGEPTPGFACVGRVG+VLAPFLPSMAKKSSGFEEE+Y
Sbjct: 119 PEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMPNDEKAEMLLVIDRANREFEFGKFFLWDTPSDGLVVRYFEGEPTPGFACVGRVGIVLAPFLPSMAKKSSGFEEEDY 231
BLAST of mRNA_E_fasciculatus_S2_contig7445.15620.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G3_ECTSI) HSP 1 Score: 188 bits (477), Expect = 5.880e-59 Identity = 91/104 (87.50%), Postives = 93/104 (89.42%), Query Frame = 1
Query: 1 PPMPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEMLLVIDRANREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVGVVLAPFLPSMAKK 312
P PQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEM NREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVG+VLAPFLPSM +
Sbjct: 43 PEGPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEM-------NREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVGIVLAPFLPSMTPR 139
BLAST of mRNA_E_fasciculatus_S2_contig7445.15620.1 vs.
Match: RuBisCo_chap_C (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9L5_9STRA) HSP 1 Score: 118 bits (296), Expect = 5.600e-31 Identity = 56/111 (50.45%), Postives = 77/111 (69.37%), Query Frame = 1
Query: 1 PPMPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEMLLVIDRANREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVGVVLAPFLPSMAKKSSGFEEE 333
P PQ+GTVA+PGG+ V ++ +PV IV +D L I +P D TE+L V+DRA +F+ GKFF+W P + +++R+F+ EP G+ C+GRV V PFL M K SSGFEEE
Sbjct: 112 PEGPQMGTVALPGGDTVTDLIDPVIIVAASDSLGISLPQDATTEVLAVVDRAEVDFQEGKFFVWQAPDKSVIIRWFKQEPQ-GYQCLGRVVFVHVPFLDVMKKPSSGFEEE 221
BLAST of mRNA_E_fasciculatus_S2_contig7445.15620.1 vs.
Match: RuBisCo_chap_C (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G1_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 7.740e-21 Identity = 44/47 (93.62%), Postives = 44/47 (93.62%), Query Frame = 1
Query: 1 PPMPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEMLL 141
P PQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEM L
Sbjct: 114 PEGPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEMHL 160
BLAST of mRNA_E_fasciculatus_S2_contig7445.15620.1 vs.
Match: RuBisCO (accumulation factor 1 n=1 Tax=Neosynechococcus sphagnicola sy1 TaxID=1497020 RepID=A0A098TKN9_9CYAN) HSP 1 Score: 55.8 bits (133), Expect = 9.920e-7 Identity = 31/88 (35.23%), Postives = 54/88 (61.36%), Query Frame = 1
Query: 25 VAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEMLLVIDRANREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVGVVLAP 288
VA+PG + + N +PVA++C ++ L +P + E+LLV+DRA R++ +FL + + L+V++F TP +GRV +V+ P
Sbjct: 254 VAIPGWQVILNAADPVALLCDSERLPTPLPGAAE-ELLLVVDRAERQWSNEGYFLSEQDDQ-LIVQWF--PETPMLPILGRVVLVMRP 337
BLAST of mRNA_E_fasciculatus_S2_contig7445.15620.1 vs.
Match: RuBisCO (accumulation factor 1 n=1 Tax=Cyanobacteria bacterium QH_9_48_43 TaxID=1919126 RepID=A0A2T2RST4_9CYAN) HSP 1 Score: 55.5 bits (132), Expect = 1.360e-6 Identity = 28/88 (31.82%), Postives = 52/88 (59.09%), Query Frame = 1
Query: 25 VAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEMLLVIDRANREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVGVVLAP 288
V +PG + V N ++PV I+ +D + +P + E+L+++DRA R+++ +F+ D+ + L V++F P +GRV +VL P
Sbjct: 259 VPIPGWQVVLNAEDPVVILSSSDHFPVPLPGKPEQEVLILVDRAQRQWDADSYFISDSSGQ-LEVQWF--AEAPELPLLGRVILVLRP 343
BLAST of mRNA_E_fasciculatus_S2_contig7445.15620.1 vs.
Match: RuBisCO (accumulation factor 1 n=1 Tax=Iningainema tapete BLCC-T55 TaxID=2748662 RepID=A0A8J6XHQ5_9CYAN) HSP 1 Score: 55.5 bits (132), Expect = 1.360e-6 Identity = 31/88 (35.23%), Postives = 54/88 (61.36%), Query Frame = 1
Query: 25 VAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEMLLVIDRANREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVGVVLAP 288
V +PG + + + ++PVAI+C +D L Q P + +L+V+DRA R+++ G +F+ D SE L ++F E P +GR+ V++ P
Sbjct: 261 VPLPGWQTLLSAEDPVAIMCNSDRLPTQTPTTPEP-VLVVVDRAQRQWDAGSYFVVDNSSE-LDFQWF--ETAPQVPILGRIIVIVRP 344
BLAST of mRNA_E_fasciculatus_S2_contig7445.15620.1 vs.
Match: hypothetical (protein n=1 Tax=Microcoleus sp. FACHB-1515 TaxID=2692821 RepID=UPI00168564B3) HSP 1 Score: 54.3 bits (129), Expect = 3.450e-6 Identity = 30/88 (34.09%), Postives = 53/88 (60.23%), Query Frame = 1
Query: 25 VAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEMLLVIDRANREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVGVVLAP 288
+ +PG + V ++PVAI+ D L + ++ E+L+++DRA RE++ +FL D S+ L +++FE EP +GR+ +VL P
Sbjct: 253 IGIPGWQVVLAAEDPVAILADPDRLPAESSGKQE-EVLVIVDRAQREWQADSYFLVDRDSQ-LEIQWFENEPIEPI--LGRILIVLRP 336
BLAST of mRNA_E_fasciculatus_S2_contig7445.15620.1 vs.
Match: RuBisCO (accumulation factor 1 n=1 Tax=Oscillatoriales cyanobacterium SpSt-418 TaxID=2282169 RepID=A0A7C3KFJ3_9CYAN) HSP 1 Score: 53.9 bits (128), Expect = 4.740e-6 Identity = 32/88 (36.36%), Postives = 53/88 (60.23%), Query Frame = 1
Query: 25 VAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEMLLVIDRANREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVGVVLAP 288
VA+PG + + + ++PV + +D L +P + E+LLVIDRA RE+ ++FL + E L V++F E +P +G+V +VL P
Sbjct: 260 VAIPGWQVILSAEDPVVALVQSDQLPTPLPGTPQ-EVLLVIDRAQREWAGDRYFLVEQ-GEQLTVQWF--EQSPNVPLLGQVVLVLRP 343
BLAST of mRNA_E_fasciculatus_S2_contig7445.15620.1 vs.
Match: RuBisCO (accumulation factor 1 n=5 Tax=Hapalosiphonaceae TaxID=1892263 RepID=A0A0M0SLE7_9CYAN) HSP 1 Score: 53.1 bits (126), Expect = 8.850e-6 Identity = 31/86 (36.05%), Postives = 51/86 (59.30%), Query Frame = 1
Query: 25 VAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEMLLVIDRANREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVGVVL 282
V +PG + + + ++PV I+C +D L Q N+ + M+ VIDRA RE+ G +F+ D E L ++F E TP +GR+ V++
Sbjct: 262 VPLPGWQTILSAEDPVVILCNSDRLPTQTQNNPEPVMV-VIDRAQREWNSGSYFVVDNSGE-LDFQWF--ETTPEVTLLGRILVIV 343 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7445.15620.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7445.15620.1 >prot_E_fasciculatus_S2_contig7445.15620.1 ID=prot_E_fasciculatus_S2_contig7445.15620.1|Name=mRNA_E_fasciculatus_S2_contig7445.15620.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=112bp MPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEMLLVIDRAback to top mRNA from alignment at E_fasciculatus_S2_contig7445:6691..7556- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7445.15620.1 ID=mRNA_E_fasciculatus_S2_contig7445.15620.1|Name=mRNA_E_fasciculatus_S2_contig7445.15620.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=866bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7445:6691..7556- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7445:6691..7556- >mRNA_E_fasciculatus_S2_contig7445.15620.1 ID=mRNA_E_fasciculatus_S2_contig7445.15620.1|Name=mRNA_E_fasciculatus_S2_contig7445.15620.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=336bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7445:6691..7556- (Ectocarpus fasciculatus EfasUO2)back to top |