mRNA_E_fasciculatus_S2_contig7443.15618.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7443.15618.1
Unique NamemRNA_E_fasciculatus_S2_contig7443.15618.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7443.15618.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDY6_9PHAE)

HSP 1 Score: 280 bits (717), Expect = 1.290e-87
Identity = 154/213 (72.30%), Postives = 167/213 (78.40%), Query Frame = 1 
Query:  307 MVERKRRAAGANLQSPGYQTHVCQSPGCPSGPLFADEED----EEEDAVPDTLANAIFSRLFCVAFVDRCIYPPAWIYEDELDSTPVAPP-LPDDNPPGETHARTTSGDNDSGEATAEDTKPLYDIILEDD-DDNTKTTAMRLGNPSRLMVAPPPSPLPQSPRRRWSDDYAVRVASSALMGDLDDLPLTVQAPPSDPHRRRSEPHDRRSAVGM 927
            MVER+RR AGANLQ  G Q    QSP CP      DE++    +EEDA PDT ANAIFSRLFCVAF DRC++PPAWIYEDELDS P APP L D NPPGE+H R+TS D + GEA AEDTKPLYD+ILEDD DDNTKT AMR GNP R MVAPPPSPL QSPRR+ SDD+A R ASSALMGDLD+ PLTVQAPPSDPHRRR EPHDR  AV M
Sbjct:    1 MVERERRTAGANLQIAGCQIPGFQSPCCP-----CDEDELLHADEEDAGPDTRANAIFSRLFCVAF-DRCVFPPAWIYEDELDSKPGAPPPLSDHNPPGESHTRSTSDDKNGGEAAAEDTKPLYDVILEDDNDDNTKTMAMRPGNPWRPMVAPPPSPLAQSPRRQRSDDHAARDASSALMGDLDEWPLTVQAPPSDPHRRRPEPHDRLLAVAM 207
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7443.15618.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL0_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.060e-31
Identity = 72/97 (74.23%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:  307 MVERKRRAAGANLQSPGYQTHVCQSPGCPSGP---LFADEEDEEEDAVPDTLANAIFSRLFCVAFVDRCIYPPAWIYEDELDSTPVA-PPLPDDNPP 585
            MVER+RRAAGANLQ  G Q    QSPGCPS     L+ADEE    DA PDTLANAIFSRLFCVAF DRC+YPPAWIYEDELDSTP A PPL D NPP
Sbjct:    1 MVERQRRAAGANLQIAGCQIPGFQSPGCPSDEDELLYADEE----DAGPDTLANAIFSRLFCVAF-DRCVYPPAWIYEDELDSTPGALPPLSDHNPP 92
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7443.15618.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL1_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.180e-13
Identity = 79/215 (36.74%), Postives = 96/215 (44.65%), Query Frame = 1 
Query:  316 RKRRAAGANLQSPGYQTHVCQSPGCPSGPLFADEEDEEEDAVPDTLANAIFSRLFCVAFVDRCIYPPAWIYEDELDSTPVAPPLPDDNPPGET-HARTTSGDNDSGEATAEDTKPLYDIILEDD-DDNTKTTAMRLGNPSRLMVAPPPSPLPQ-----------SPRRRWSDDYAVRVASSALMGDLDDLPLTVQAPPSDPHRRRSEPHDRRSAV 921
            R+R AAG NL +    +H  +S       + A       D   DT  NA+  RL   A   + +   AWI     D T  A  L  D    +T       G  D      E  K  +D+   D  DD+TK TA R GN S L V P                  SP RRWSD   VRVAS+ALMGDL   PLTVQAPP++ HRRR EP+  +  V
Sbjct:    3 RQRSAAGENLPNSSCPSHREES-------MLAGHV----DVGADTAGNAVKRRLMFGALNRKIMDLSAWIRVGGPDGTAAAAVLVRDQELSDTGRVPKKLGTTDRERRAVEGAKSWWDVDRGDGGDDSTKKTA-RGGNLSPLTVTPXXXXXXXXXXXLSXXXXLSPVRRWSDADVVRVASTALMGDLKLSPLTVQAPPNNRHRRRCEPYTAKPPV 205
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7443.15618.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.290e-8772.30protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.060e-3174.23protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.180e-1336.74protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7443contigE_fasciculatus_S2_contig7443:1505..5864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1888
Hectar predicted targeting categoryother localisation
Exons3
Cds size792
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842407.1165605-UTR-E_fasciculatus_S2_contig7443:1504..22941696842407.1165605-UTR-E_fasciculatus_S2_contig7443:1504..2294Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7443 1505..2294 -
1696842407.1453214-UTR-E_fasciculatus_S2_contig7443:3538..36831696842407.1453214-UTR-E_fasciculatus_S2_contig7443:3538..3683Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7443 3539..3683 -
1696842407.154974-UTR-E_fasciculatus_S2_contig7443:5703..58641696842407.154974-UTR-E_fasciculatus_S2_contig7443:5703..5864Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7443 5704..5864 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842407.1267614-CDS-E_fasciculatus_S2_contig7443:2294..28921696842407.1267614-CDS-E_fasciculatus_S2_contig7443:2294..2892Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7443 2295..2892 -
1696842407.1363454-CDS-E_fasciculatus_S2_contig7443:3344..35381696842407.1363454-CDS-E_fasciculatus_S2_contig7443:3344..3538Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7443 3345..3538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7443.15618.1prot_E_fasciculatus_S2_contig7443.15618.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7443 2295..3538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7443.15618.1

>prot_E_fasciculatus_S2_contig7443.15618.1 ID=prot_E_fasciculatus_S2_contig7443.15618.1|Name=mRNA_E_fasciculatus_S2_contig7443.15618.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=264bp
MVERKRRAAGANLQSPGYQTHVCQSPGCPSGPLFADEEDEEEDAVPDTLA
NAIFSRLFCVAFVDRCIYPPAWIYEDELDSTPVAPPLPDDNPPGETHART
TSGDNDSGEATAEDTKPLYDIILEDDDDNTKTTAMRLGNPSRLMVAPPPS
PLPQSPRRRWSDDYAVRVASSALMGDLDDLPLTVQAPPSDPHRRRSEPHD
RRSAVGMFNDARVSPACSSSGGRGSRSSSSSSSGEDPNIIRRAHWREDDC
LAGGMPGGIGGTH*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7443:1505..5864-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7443.15618.1 ID=mRNA_E_fasciculatus_S2_contig7443.15618.1|Name=mRNA_E_fasciculatus_S2_contig7443.15618.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4360bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7443:1505..5864- (Ectocarpus fasciculatus EfasUO2)
GTGGCCGACCGCCGATGGGCCGGTGCTGCAACAGCAGATGATATGCATAG
CATACGTTCCTGGAAGTTTGGACTTTGCCTACCCCCTACCATACGTTTGC
GGAGCAGCCAGCATTGGATTGAGGTGGAGTACTCGCTGCATGGACGTCCA
CACTTGAAGAGGTAAGTAATGGTGCGGTTGGGGATATGACGGAAACCGGC
GGATCAACCGTTTCTCCGCCGTAAAGTACAGCAGTAGTGCCCGAGCTGCC
CGGCGGGGGTTTCCCAACGCTTTCCACCCTATCCACGGGCATCGATGTAC
AGTAGTCGCGCTGTCCGTCTACTTGTACTACTACTGCCGTCTCTCCTTCT
CTGCGACCCGGCAATTGCCCACATTCAATGTCATGACGTGTTCACCCGAG
CTGGCTCCACCAAAAGGAAGAAAAAAGACGTTCAGCTCACAAAATAGACC
TGCCTACATGTACCTACACCTGTGTTGCACGGGAAATCGGAGAGGGTAGC
AAGTAGCAAGCTGTTGACCTGGACGAGACTACGTACGCGCGTACCTACAA
GCAGCGCACGCACAGAGATATTGAAACGTTGAAAGCATTCAAGCGAAGGC
GCAGATGCCCCAAACCCTACACTGTCTGCTGTATGTAGCCTGTGTCTCGA
CAATCTGTAGGCGCAATCGCCAAAACGTTGAAAACGGACTTTTCTTCACA
TGCACCCTTCCGCTGTGGATGTGTGACGCACTTCTTCACGAGAAAACAAT
CGTCCAGGGGGTTTGTGTGTTCTCATCCCATCTACGTTCGGGGTATTTGT
TGACGTTGCGGTTGTCCTGCGTTGAACCGTCCCGGTCTTCGCTCCGTCAG
TACCTGTAGCATCCGTCTGGTCCAACGACGCGGCGCCTTCCGTGGGCACA
GGAGAACTACTGCACAGCAGTACCCAACAAAAAGGGCGCCTTCGCGAGAA
AATAAGTTTATTAGGAACCCTAACGTTAAAGCAGCTTCGTCCAACATGTT
GACACTCGTAAAATCACTGCGAAGGACGCTGAAACAAAGAAGGTGGACAC
AGAAAGACGTTCAGCTCACACACATACATCGTATTGAAGTGTTGCCCAAA
CCCCTGAATCCTAACCGAACCCATGGCCCACGGAACACCCTTAGGACGTC
CATGAAATGTCGTGCATCGCCGTGGGTAAGGAAACGACTGGTTTAACCCC
CAACGACATACTTCAAGGATCTATCTACATGTACTGCTGTTCGGGGCTCA
CAGATGGCGTGGGATGCCCCCGGAACGTCCCGGTGGGCACGGCCCATGAG
CCGTTTGCGTGGGCCGTCCCATGCAACGTCCCATGGGATGTCCTACGCGT
CCAATGCGACGTCCCGATTGCGCCATCGTCCCATGGGACGTCCCACAACT
ATCAGGACCAGGGGAGGTTGCGATGAATGGACGATTTCGTTTTTTGGCTG
ATTTCTCCAGCGTGTGTCCTCGTAGGGTAAGTTAGTCTGCATCCACGGAA
CGGATGGGTATCCGTGTCAGTTGGAGCGATACGGATAGTCGACGGAACCA
AGTGGAGGCCGAAACAAAAAATACAACAACAACGACAACGACAACAACAA
CAACAACAATACTATCGACAAATTGTGCCTGTCTTATTTCATTCGACCAT
CAAGCGGGCGTGTCCATAAACAACATTCAATACAATACGATATTCAACAC
TAGACGGTATCTCGTTCCCACGAGTCAGGCACTTCAAGGCAATTTGTCGC
TCCGTCAGTACACCATAATCCACAGGCAGTGTTCTCTATTCCGAAGGACA
TAGCGGAAGGACTAGCGCTTTTAAACTCCGCCTAAGGTGGTGGTGGCTTC
CATGCTGACATACTGTATACGAAAACAAACGAGCCTCAGTATCTGGTCTG
GAACATTTGGACAGCCACCTTCACCAACAATCAACAGCCAAAACATATAT
ACACCCCACCCGTTATCCAACCGACGTCCTGTCCACCGACGCTCACCTGC
CCCTACCTCGACCCAATTCAACATAATACCCCAACCTCTGTGTGCAGCAA
CCTTTGCTCTCTGGAGGGATCAATGCGTTTTTTCCAGTGGTTTGTTCTCG
CCTCTCACGTTGCATAGACTATAGATTCTGAAGGAGACCGGACGACGTCT
CGCTGTTTCCCCTGTTTCCTCTCTTCTTCAGTATTCGCAGCCTCCACTCG
TCGTCTCTTGCGGTCAGCATTGGGCGTGTTCCGCTTTCCAAGAAGCAGGA
AGTGCGACTAAAGCTGCCTACGACGTGAAGGCCCGTCGTCGTACCGTAGA
TACCCCGTGTGGAGTACTCTGCAGTCATGGTGGAGCGGAAAAGGAGGGCG
GCCGGTGCGAACCTACAGAGCCCTGGCTACCAGACCCATGTCTGCCAGAG
CCCTGGCTGCCCAAGCGGGCCCTTGTTCGCTGATGAGGAGGATGAGGAGG
AGGATGCCGTGCCTGATACTCTTGCCAACGCCATCTTCAGCCGCCTGTTT
TGCGTCGCTTTCGTTGACAGGTGTGTGTGTGTGTGTGATATTTGCTAATC
GCGCCAGGCAGGAGTTGCCAAAAATACTTGGTTTTCCGAGCTCGAGACGT
CTTCTAGCATGTCTCCGGGAAGAGACCTTTCATGGAAGGAAACTCAAGCG
CCCATAGAATAGCCTAAGTAGCTGAATGCATTCTTGGACATGTCGGTGGA
CGTCGATGCACGATGCACACGTCTCGGCGGGCGTATTTGCGAGCGTAAAA
TGATTATCTAGGCTATTGATTGATTTTTGCAATCAACACAACAGCCGCGC
ATGGCTTTCCAACATATTTTTTCCGGGGTATGGGATCCAGAGCAGTACGT
CTATACTAGAAACACAAGGTCCTCGAGCTGCCGCCGTAATGCAGCATTAG
GGTGTATGAACAACGCATGCGAATGTCACCCTCTGAAGCAGAAACCTTTC
GTGTTCACGAACACCGCGGCAGGTGTATTTATCCGCCGGCATGGATCTAT
GAGGACGAGCTGGACAGCACGCCTGTAGCACCGCCTCTTCCCGACGACAA
CCCGCCTGGTGAGACTCACGCTCGAACCACTAGCGGCGACAACGACAGCG
GAGAAGCAACAGCGGAGGACACCAAACCGTTGTACGACATCATCCTCGAA
GACGACGATGACAACACGAAGACGACGGCGATGAGGCTGGGCAACCCATC
CCGCCTCATGGTGGCACCACCACCATCACCTCTTCCTCAGTCTCCTCGTC
GGCGATGGTCCGACGACTACGCCGTTCGCGTTGCCAGCTCCGCGTTGATG
GGGGACCTGGACGATTTGCCGCTCACGGTCCAGGCGCCGCCTAGCGACCC
GCACCGTCGGCGATCTGAGCCGCACGACCGACGGTCGGCCGTAGGGATGT
TTAACGACGCACGTGTTTCTCCGGCCTGTTCCAGTAGCGGCGGCAGGGGC
AGCAGAAGCAGCAGCAGCAGTAGCAGCGGTGAGGATCCGAATATTATACG
AAGGGCTCATTGGCGGGAGGACGACTGCCTGGCAGGGGGCATGCCGGGCG
GTATCGGAGGCACACATTGAACCCGCTCCGATTTCTCCCTGGCTCGATGG
CCAAAGCTCGCGGTTTGTGCGGTAAAGCACTGCCACGGGTGGGCATGTGT
GCTCTCCGCCTGCGTGTGGTTTCTGATAAGGGTGATGTACCGACGACTCC
AGGGGTGCTACGGAGAACAGTAGACATGCATGCGGCAAAAGAAGGTCCCG
CTGGATACCGTCACGAAAGCGTGAGGGGCGGGGAAGTAGCCTTTTTTTTG
TGTTTTTTGTTTGTTTTCACTGCAAATATCATGTGTGCCTTTTACTCGAA
CCCTTGGTCACACAGAAGGGCTCCTCTCCCTGAGGCCCTCTACAAGTACG
CACCCCTCCTGCGGTGCTTTGCCTTCCTTCGATTTTTAATGCGAGAAGAG
TGCAGCACTCTTTTCCCTCTGCGTACACACGAACTATGGGGTAATGCTGT
ATTTTGACAACGATAAATGCTCTCTCAGCGGATATGTAGGTAAGAGGGGC
CTGAAAACACCCTTCGCCTTTCGTGCTGCGAACGTTTTCCGACATGCCTT
CCTCAAGGGGGGTGGAGTGCGAATTTCTTGGAGGCCACGATATGTGGGGT
TTTTGTAGTCAAAGATTTGTGAGGTTGACCGTGGATTGTTCGCTCCTTAA
TGGTGTGGTGCTGGTTGACCAACCTGCACGGGACTATAGGTGCGGTACGC
CGGATGCTGAAACTACATGGTTTTCTATTCGGAAGAATCCGTCAAGTCAA
GCTTTTGGCTGTTTGGGAGAGAACGGGGAGGGTGACGGTGGTTTCGATTC
GGGGCGGGGG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7443:1505..5864-

>mRNA_E_fasciculatus_S2_contig7443.15618.1 ID=mRNA_E_fasciculatus_S2_contig7443.15618.1|Name=mRNA_E_fasciculatus_S2_contig7443.15618.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=792bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7443:1505..5864- (Ectocarpus fasciculatus EfasUO2)
ATGGTGGAGCGGAAAAGGAGGGCGGCCGGTGCGAACCTACAGAGCCCTGG
CTACCAGACCCATGTCTGCCAGAGCCCTGGCTGCCCAAGCGGGCCCTTGT
TCGCTGATGAGGAGGATGAGGAGGAGGATGCCGTGCCTGATACTCTTGCC
AACGCCATCTTCAGCCGCCTGTTTTGCGTCGCTTTCGTTGACAGGTGTAT
TTATCCGCCGGCATGGATCTATGAGGACGAGCTGGACAGCACGCCTGTAG
CACCGCCTCTTCCCGACGACAACCCGCCTGGTGAGACTCACGCTCGAACC
ACTAGCGGCGACAACGACAGCGGAGAAGCAACAGCGGAGGACACCAAACC
GTTGTACGACATCATCCTCGAAGACGACGATGACAACACGAAGACGACGG
CGATGAGGCTGGGCAACCCATCCCGCCTCATGGTGGCACCACCACCATCA
CCTCTTCCTCAGTCTCCTCGTCGGCGATGGTCCGACGACTACGCCGTTCG
CGTTGCCAGCTCCGCGTTGATGGGGGACCTGGACGATTTGCCGCTCACGG
TCCAGGCGCCGCCTAGCGACCCGCACCGTCGGCGATCTGAGCCGCACGAC
CGACGGTCGGCCGTAGGGATGTTTAACGACGCACGTGTTTCTCCGGCCTG
TTCCAGTAGCGGCGGCAGGGGCAGCAGAAGCAGCAGCAGCAGTAGCAGCG
GTGAGGATCCGAATATTATACGAAGGGCTCATTGGCGGGAGGACGACTGC
CTGGCAGGGGGCATGCCGGGCGGTATCGGAGGCACACATTGA
back to top