mRNA_E_fasciculatus_S2_contig7413.15590.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7413.15590.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL0_9PHAE) HSP 1 Score: 119 bits (297), Expect = 1.240e-25 Identity = 66/119 (55.46%), Postives = 77/119 (64.71%), Query Frame = 1
Query: 139 LETRRGKRKAWSMAKALRRHSIWKA-GNGQPDHDESPTRALSKRQRNTSAAGTTGSRRVETHKTASRTTARYHGQGQRCCQEHGCTTRPSYGKAGSKKAEFCSQHAMPGMIHVFCKKCG 492
L+ R GKRK SMAKAL RHS+W A G+ QP+H ES TR SKRQR T ARYH QGQRCCQEHGCTT+PSYG+A SK A+ CSQH+ PGM ++ K+CG
Sbjct: 77 LQARPGKRKLGSMAKALCRHSVWTAAGSRQPNHTESLTRTSSKRQRKXXXXXXXXXXXXXXXXXXXXTAARYHDQGQRCCQEHGCTTQPSYGQAHSKNAQLCSQHSKPGMTNLTKKRCG 195
BLAST of mRNA_E_fasciculatus_S2_contig7413.15590.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFM6_ECTSI) HSP 1 Score: 106 bits (264), Expect = 1.910e-21 Identity = 60/102 (58.82%), Postives = 72/102 (70.59%), Query Frame = 1
Query: 175 MAKALRRHSIWKA-GNGQPDHDESPTRALS-KRQRNTSAAGTTGSRRVETHKTASRTTARYHGQGQRCCQEHGCTTRPSYGKAGSKKAEFCSQHAMPGMIHV 474
MAKAL R+S+W A G+ QP+H ESPTRA S +RQ TS TTG H T+ RT AR H QGQR CQE GCTT+PSYG+A K A+FCSQH+ PGM ++
Sbjct: 1 MAKALCRYSVWTAAGSRQPNHTESPTRASSNRRQGKTSPPETTGGGTAAIHTTSWRTKARCHDQGQRYCQERGCTTQPSYGQAYRKNAQFCSQHSKPGMTNL 102
BLAST of mRNA_E_fasciculatus_S2_contig7413.15590.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFM7_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 8.500e-20 Identity = 50/82 (60.98%), Postives = 58/82 (70.73%), Query Frame = 1
Query: 244 PTRALSKRQRNTSAAGTTGSRRVETHKTASRTTARYHGQGQRCCQEHGCTTRPSYGKAGSKKAEFCSQHAMPGMIHVFCKKC 489
P RA SKRQR TSA TTG H T+ RTTARYH QGQR CQEHGCT +PSYG+A + A+FCSQH+ PGM + K+C
Sbjct: 7 PARASSKRQRKTSAPETTGXXTAAIHTTSRRTTARYHDQGQRYCQEHGCTAQPSYGQAHNNNAQFCSQHSKPGMTKLTKKRC 88
BLAST of mRNA_E_fasciculatus_S2_contig7413.15590.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY22_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 3.250e-19 Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 1
Query: 328 ASRTTARYHGQGQRCCQEHGCTTRPSYGKAGSKKAEFCSQHAMPGMIHVFCKKCGH 495
AS TTARYHG+GQRCCQEHGCT RPSYG GSKKAEFCS+H+ PGM +V K+CGH
Sbjct: 16 ASCTTARYHGKGQRCCQEHGCTARPSYGIDGSKKAEFCSKHSKPGMTNVTKKRCGH 71
BLAST of mRNA_E_fasciculatus_S2_contig7413.15590.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY67_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 1.010e-17 Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 1
Query: 337 TTARYHGQGQRCCQEHGCTTRPSYGKAGSKKAEFCSQHAMPGMIHVFCKKCGH 495
TTARYHG+G RCCQEHGCT RPSYG G KKAEFCS+H+ PGMI++ K+CGH
Sbjct: 15 TTARYHGKGNRCCQEHGCTVRPSYGIDGCKKAEFCSKHSKPGMINLTKKRCGH 67
BLAST of mRNA_E_fasciculatus_S2_contig7413.15590.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIF7_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 1.100e-16 Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 1
Query: 328 ASRTTARYHGQGQRCCQEHGCTTRPSYGKAGSKKAEFCSQHAMPGMIHVFCKKCGH 495
A RTTARY GQG+RCCQEH CTTRPSYGKA SKK EFCSQHA PGM+ VF KKCGH
Sbjct: 14 APRTTARY-GQGRRCCQEHDCTTRPSYGKAHSKK-EFCSQHAKPGMVSVFGKKCGH 67
BLAST of mRNA_E_fasciculatus_S2_contig7413.15590.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8B4_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 1.510e-16 Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1
Query: 328 ASRTTARYHGQGQRCCQEHGCTTRPSYGKAGSKKAEFCSQHAMPGMIHVFCKKCGH 495
+SRT+ARY GQG+RCCQE+ C RPSYG+A KKAEFCSQH PGM++V K+CGH
Sbjct: 16 SSRTSARYRGQGRRCCQENCCAKRPSYGEAHGKKAEFCSQHMQPGMVNVVSKRCGH 71
BLAST of mRNA_E_fasciculatus_S2_contig7413.15590.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U8_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 3.440e-16 Identity = 56/83 (67.47%), Postives = 58/83 (69.88%), Query Frame = 1
Query: 241 SPTRALSKRQRNTSAAGTTGSRRVETHKTAS-RTTARYHGQGQRCCQEHGCTTRPSYGKAGSKKAEFCSQHAMPGMIHVFCKK 486
SPT SKRQR SA GT G V THKTAS R+TAR QGQR C+EHGCT RPSYGKA SKKAEFC QH GMI V KK
Sbjct: 10 SPT---SKRQRKASAPGTMGGGTVATHKTASSRSTARCQRQGQRSCREHGCTIRPSYGKAHSKKAEFCYQHRERGMIDVRSKK 89
BLAST of mRNA_E_fasciculatus_S2_contig7413.15590.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ79_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 1.410e-15 Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1
Query: 334 RTTARYHGQGQRCCQEHGCTTRPSYGKAGSKKAEFCSQHAMPGMIHVFCKKCG 492
R TAR+HGQG+RCCQEHGCTTRPSYG+A SK A+FCSQH + GM+ V K+CG
Sbjct: 18 RPTARHHGQGRRCCQEHGCTTRPSYGQAHSKHAQFCSQHKLRGMVDVVKKRCG 70
BLAST of mRNA_E_fasciculatus_S2_contig7413.15590.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG2_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 8.750e-15 Identity = 40/56 (71.43%), Postives = 44/56 (78.57%), Query Frame = 1
Query: 331 SRTTARYHGQGQR-CCQEHGCTTRPSYGKAGSKKAEFCSQHAMPGMIHVFCKKCGH 495
SRT R HGQ QR CCQE GCTTRPSYG AG KKAEFCSQH PGM+++ K+CGH
Sbjct: 12 SRTPTRLHGQRQRLCCQEDGCTTRPSYGNAGCKKAEFCSQHKKPGMMNLVSKRCGH 67 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7413.15590.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7413.15590.1 >prot_E_fasciculatus_S2_contig7413.15590.1 ID=prot_E_fasciculatus_S2_contig7413.15590.1|Name=mRNA_E_fasciculatus_S2_contig7413.15590.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=245bp MSSAGLEPEIGDFAETGTVTHGTDDIQVKEEEDEQEDGQEKRVRLETRRGback to top mRNA from alignment at E_fasciculatus_S2_contig7413:1582..6705+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7413.15590.1 ID=mRNA_E_fasciculatus_S2_contig7413.15590.1|Name=mRNA_E_fasciculatus_S2_contig7413.15590.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5124bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7413:1582..6705+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7413:1582..6705+ >mRNA_E_fasciculatus_S2_contig7413.15590.1 ID=mRNA_E_fasciculatus_S2_contig7413.15590.1|Name=mRNA_E_fasciculatus_S2_contig7413.15590.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=735bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7413:1582..6705+ (Ectocarpus fasciculatus EfasUO2)back to top |