mRNA_E_fasciculatus_S2_contig7411.15589.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7411.15589.1
Unique NamemRNA_E_fasciculatus_S2_contig7411.15589.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7411.15589.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7411contigE_fasciculatus_S2_contig7411:4051..4680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size179
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size120
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842404.315691-UTR-E_fasciculatus_S2_contig7411:4050..41081696842404.315691-UTR-E_fasciculatus_S2_contig7411:4050..4108Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7411 4051..4108 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842404.330903-CDS-E_fasciculatus_S2_contig7411:4108..41391696842404.330903-CDS-E_fasciculatus_S2_contig7411:4108..4139Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7411 4109..4139 +
1696842404.3403757-CDS-E_fasciculatus_S2_contig7411:4366..44251696842404.3403757-CDS-E_fasciculatus_S2_contig7411:4366..4425Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7411 4367..4425 +
1696842404.3518777-CDS-E_fasciculatus_S2_contig7411:4650..46801696842404.3518777-CDS-E_fasciculatus_S2_contig7411:4650..4680Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7411 4651..4680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7411.15589.1prot_E_fasciculatus_S2_contig7411.15589.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7411 4109..4680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7411.15589.1

>prot_E_fasciculatus_S2_contig7411.15589.1 ID=prot_E_fasciculatus_S2_contig7411.15589.1|Name=mRNA_E_fasciculatus_S2_contig7411.15589.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=40bp
MRERETHERAGSMASAGLEDGIGVFAGTVMATPGSDGIQV
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mRNA from alignment at E_fasciculatus_S2_contig7411:4051..4680+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7411.15589.1 ID=mRNA_E_fasciculatus_S2_contig7411.15589.1|Name=mRNA_E_fasciculatus_S2_contig7411.15589.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=630bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7411:4051..4680+ (Ectocarpus fasciculatus EfasUO2)
AACAGAGAAAGTCGTCATGCTTAGCCTGGCATGCTGCTGATGTGTATGCT
ATACATGAATGAGGGAGAGAGAGACGCATGAGCGGGCAGGTACATGCCGG
CGATATCAAGGCAGGGAGGTGTAACCTATATTCCAGTTCTGTCGTTAGCC
AACTGCGGAGGCGAGCAGGGTGTGTCCCTTGGTGAAAAATGGCAGCCTGT
TCTCTATGCAGCAGCTGGTTCTGCCATGTCACCTACATGACCTCTTCACG
AAGCCACCGCTACGTTCGTAACCAAGCCGCCTTCTGCTTGTTGCATTATT
TTCGTATTGCACACAGGCTCGATGGCATCTGCTGGATTGGAAGATGGGAT
TGGTGTTTTCGCTGGGACAGTCATGGTGAGTCTTGCGTGCAGCTGCAAAG
GGTGGGCTGCCGAGCCCGGCTAGAGGCAACGCTCAGCCGAAAATGCGGTT
ATTTATTATCTACCGGTGTTTCGAGACAAAGATTGGTACCATGTAGACAC
GTTCCCTCCGCTCACTGCCAGCTTGTAGTACAAATTTGTTGTTTTATTTC
CCTGCTAGCACACAATGCGGTGACCGTGTTGTATTGGGTGGCATTAACAG
GCCACTCCTGGGAGCGATGGCATCCAGGTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7411:4051..4680+

>mRNA_E_fasciculatus_S2_contig7411.15589.1 ID=mRNA_E_fasciculatus_S2_contig7411.15589.1|Name=mRNA_E_fasciculatus_S2_contig7411.15589.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=120bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7411:4051..4680+ (Ectocarpus fasciculatus EfasUO2)
ATGAGGGAGAGAGAGACGCATGAGCGGGCAGGCTCGATGGCATCTGCTGG
ATTGGAAGATGGGATTGGTGTTTTCGCTGGGACAGTCATGGCCACTCCTG
GGAGCGATGGCATCCAGGTG
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