mRNA_E_fasciculatus_S2_contig74.15577.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig74.15577.1
Unique NamemRNA_E_fasciculatus_S2_contig74.15577.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig74.15577.1 vs.
Match: DENN (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ29_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.520e-7
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 2 
Query:   65 GVFVSTKGTEMCLELVRTCAFAALLSDEVFADVDLETVQ 181
            G      GTE+C+ELVRT AFAALLSDEVFADVDLETVQ
Sbjct:  928 GGLCGVPGTELCMELVRTRAFAALLSDEVFADVDLETVQ 966
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BLAST of mRNA_E_fasciculatus_S2_contig74.15577.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP3_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 2.620e-7
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 2 
Query:   65 GVFVSTKGTEMCLELVRTCAFAALLSDEVFADVDLETVQ 181
            G      GTE+C+ELVRT AFAALLSDEVFADVDLETVQ
Sbjct: 1389 GGLCGVPGTELCMELVRTRAFAALLSDEVFADVDLETVQ 1427
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig74.15577.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
DENN2.520e-776.92domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
RGS2.620e-776.92domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig74contigE_fasciculatus_S2_contig74:48667..51184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size504
Hectar predicted targeting categoryother localisation
Exons3
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842402.6527746-UTR-E_fasciculatus_S2_contig74:48666..486671696842402.6527746-UTR-E_fasciculatus_S2_contig74:48666..48667Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig74 48667..48667 +
1696842402.699379-UTR-E_fasciculatus_S2_contig74:50990..511841696842402.699379-UTR-E_fasciculatus_S2_contig74:50990..51184Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig74 50991..51184 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842402.6634185-CDS-E_fasciculatus_S2_contig74:48667..487521696842402.6634185-CDS-E_fasciculatus_S2_contig74:48667..48752Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig74 48668..48752 +
1696842402.6739335-CDS-E_fasciculatus_S2_contig74:49134..492291696842402.6739335-CDS-E_fasciculatus_S2_contig74:49134..49229Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig74 49135..49229 +
1696842402.689606-CDS-E_fasciculatus_S2_contig74:50861..509901696842402.689606-CDS-E_fasciculatus_S2_contig74:50861..50990Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig74 50862..50990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig74.15577.1prot_E_fasciculatus_S2_contig74.15577.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig74 48668..50990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig74.15577.1

>prot_E_fasciculatus_S2_contig74.15577.1 ID=prot_E_fasciculatus_S2_contig74.15577.1|Name=mRNA_E_fasciculatus_S2_contig74.15577.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=103bp
MTGAAPRASARAATCRGFPAGGVFVSTKGTEMCLELVRTCAFAALLSDEV
FADVDLETVQATDHTTRYGDFPQTTGTRTRRRPAGKERPHETRRPKAASR
RQ*
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mRNA from alignment at E_fasciculatus_S2_contig74:48667..51184+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig74.15577.1 ID=mRNA_E_fasciculatus_S2_contig74.15577.1|Name=mRNA_E_fasciculatus_S2_contig74.15577.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2518bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig74:48667..51184+ (Ectocarpus fasciculatus EfasUO2)
GATGACGGGAGCAGCGCCGAGGGCGTCGGCGAGGGCGGCCACTTGTAGGG
GGTTCCCGGCTGGTGGTGTGTTTGTGTCAACGAAAGGTAGTTTTGGGTGT
TTGTGAAGGGCGGTGGGGGGGGAAGGTTTGAAAGGCGCGTTGTTCGTGCC
GTTTTTTCGTGGAGGCTAATCCGTTGAGATGCCCGAGGGAGATTCGCGGT
GTTCTCTCTGCATTCGTTTATGCTCTGGGACGATGCTGGAGGAGTCATGC
GTTCACTGATTGGCTTGCTTGGTTTCTTGTGTTGGTGATTGGTGATGGAT
GGGGCAGTCACTAAATAATGCATCACCAGGGATCTTTCATGCCAATGCGT
GTAACTTCCAACGCCTGCAACAACCGGGCGCGACGCCTCTTGATTGCGGT
CTTCCGTCCGTGGTATGTCTTCTTTCTTGCCCGCCCGCCATCCGGGTGTG
GTGTTGACAACATCGTAGGCACGGAGATGTGCCTGGAACTGGTTCGTACG
TGTGCGTTCGCCGCGCTGCTCTCGGATGAGGTGTTCGCGGACGTCGACTT
GGAGACCGTGCAGGTGAGCCAGCCTAGCCGAAGAGCCCCGTGCTGCAGTA
GTATTATAGTCGGGGGGGTCTTCGTTCCCCGTGCTCCATTCTGTGCCCCG
GCTGTTGAGTTAGGGAAGGGGAGCATCGTTGTGGAATTGGGCAGTTTTGA
AAATGCCGGATTGTTGAGACGTACAGTACCGCTAAAGAAGCGTGTGCTTC
TGGGGAAGAGTAGGGACCACGATAGACGGCTGTGATGTACGTCGTATTTA
CCCTTGCACGGGAAAATCTGAGTCGTTCCATCTTATACGGCAAGATTCCA
GTCAATCCATAGCCACGGGGGGGAGAGTCTGGCGGCAACCACTACCAACC
GGTCGGCACCACAATCAACCGGTCGGCGTAGATCAGAAGCAGCCAAGGCG
CCGCCAAGCTGACATACCGAGCACGCACGAGCGATGCTATTGCTCGTTTT
GGCTTCGGTGGATTGGGATCGGTTTCATCGCTCCCCAGCGACTTGCAGGG
CTACAACTAGCTTGAGGTTTCGCGGCCTTTCCGAATTGTGGTGGCGTGTT
TTTCATGACATGAGTGTGGCAGGGTGTGCGGTGCCGGCCAAGTACTAGTC
TAGGTGCCGATGCCAGGTCCCGAGGGGCTTGCTGCCGGCGATAGCTCGTG
TCCAAACCACGCACAAGCACGCCTACCTGTAGAAAGTCAACTTCTCCAAC
ACGATTAACTTTATGCAGCCATCTACCGCCTTGGCAGGAATAGGTGAAAG
GTCGGGTATAACCAAGCAATATGCCAGCCACCAGCGCTGGTAAGACCCAT
GCTGGAACGAGGGCAGCTTTTTCGAGGCGCACCTTTCAGCTACTGTAGCT
GAGAAATGATCATTCACGTGTTCGTTGGATGCTAGCGAGCGCCGGCTATG
CTGCCGTCTTGTCTGCCGACTATCACGTGGACGGGGCGGATGTCCTGATC
TGCCTGGAATGTAATCGGGGCTCCTCCTGGTTTTTCGGTCGATTCGGTGG
GCGAGTAAAAAAATAAGACAACGAGCGCGGGGAATGGGGTATGGGCGTGG
AGCTGCTGAAGCAAGATGGTGGGTTTGACGCAGGATGGTATAAACTTGCC
CGCACGCGACAATACGACGGGCGTGTTTCATCTATTCATTGTAGTGAGAT
CGATAGGGCCGGGCGAGCGCGCAAATTCGACATAGCAGGACGTCAACCTG
TCAAAGCGTCAAAGCGGAAATCGAGAGATTTAGACTATAGTATGTGAAAT
TCTCGACTGTACGTACGTTGAATGTTGGCAGTGTTGACCGCCACGTGCGT
TGACTTTGATGTGGCTGGGAACTGGATCCCTCTGCGAGAAACGATTGAAA
CCATGACTCAACGGCTGAACGGTGCCTAGTCATATCCTGCCGAGGACAAC
ACTGGGCGATATGTACTGGTCGACGACGGGCTCAAACACTGATTCGACCT
CAAACAAAGGAAATTGCTCGCCCAGCTACGGACCACCACGAGATACCAAG
AATAACCTCAAATAACAACGACTGAAACAATGGGGCTGAACTGTGCCGAG
TGAAATCCTCCCGAGGACAATGATATTGGTCACCACCGGCCAACGACTGG
CTGAATCGCTTATGATGCGACCTTCTCGTGGAAATTACGCTCTAGGCTAC
GGACCACACCACGAGATACGGAGATTTTCCTCAAACAACTGGCACAAGGA
CGAGGAGGAGGCCAGCCGGCAAGGAGCGACCACACGAGACAAGAAGACCA
AAAGCAGCATCGAGACGGCAATAACCAACGGCGCGGTAGAGGGACCAACG
GAAGGACGAAACGACGAAAGAAGAAAGCAAACGAGAAATTGGCGGACCGT
GTTGCACGGCACGTAGCGGATTGATGCTCGCCTGTCTATATTTCCCTGCT
CCCCTCCCGAGTTACGTGCGGTGTCTGTGTGGTTGTGTATGTTTGTACTT
GGTGGTTTGTCTCTTCTT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig74:48667..51184+

>mRNA_E_fasciculatus_S2_contig74.15577.1 ID=mRNA_E_fasciculatus_S2_contig74.15577.1|Name=mRNA_E_fasciculatus_S2_contig74.15577.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=309bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig74:48667..51184+ (Ectocarpus fasciculatus EfasUO2)
ATGACGGGAGCAGCGCCGAGGGCGTCGGCGAGGGCGGCCACTTGTAGGGG
GTTCCCGGCTGGTGGTGTGTTTGTGTCAACGAAAGGCACGGAGATGTGCC
TGGAACTGGTTCGTACGTGTGCGTTCGCCGCGCTGCTCTCGGATGAGGTG
TTCGCGGACGTCGACTTGGAGACCGTGCAGGCTACGGACCACACCACGAG
ATACGGAGATTTTCCTCAAACAACTGGCACAAGGACGAGGAGGAGGCCAG
CCGGCAAGGAGCGACCACACGAGACAAGAAGACCAAAAGCAGCATCGAGA
CGGCAATAA
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