mRNA_E_fasciculatus_S2_contig74.15576.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig74.15576.1
Unique NamemRNA_E_fasciculatus_S2_contig74.15576.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig74.15576.1 vs.
Match: DENN (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ29_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.300e-28
Identity = 96/191 (50.26%), Postives = 103/191 (53.93%), Query Frame = 2 
Query:    2 WPAEAARRARRVVQSTRFPEFESFDGFLKPLQRPPTXXXXXXXXXXXXXXXXXGRKLLSAKLLSATRSRRVGLQLRLGGGL*GS--PQTGLCCP*VTSLPRSLRGSVGGGGTATGTDTTTLTESIVGMYIPTLADLGLPAGAAGLVASVLGRVKEFTTLFAQAGLMRFATAGFVTSVASRYSSGGKSVAAG 568
            WP EAARRARRVVQST FP+FE+FD      + PP      XXXXX       G                       GGG   S   +   C     +   S RG  GG GT        LTESIVGMYIPT ADL L A  AGLVASVLGRVKEFTTLFAQAGLMRF TAGFV +VA+R   GG    AG
Sbjct:  700 WPEEAARRARRVVQSTLFPDFETFDVVS---ETPPQVDDFDXXXXXSALFKCSGLS---------------------GGGAEASLRDKVEACRTSAAAASASRRGISGGAGT--------LTESIVGMYIPTAADLALRAAVAGLVASVLGRVKEFTTLFAQAGLMRFDTAGFVKAVATRGIGGGSKTDAG 858
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BLAST of mRNA_E_fasciculatus_S2_contig74.15576.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP3_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 2.180e-25
Identity = 85/178 (47.75%), Postives = 92/178 (51.69%), Query Frame = 2 
Query:    2 WPAEAARRARRVVQSTRFPEFESFDGFLKPLQRPPTXXXXXXXXXXXXXXXXXGRKLLSAKLLSATRSRRVGLQLRLGGGL*GS--PQTGLCCP*VTSLPRSLRGSVGGGGTATGTDTTTLTESIVGMYIPTLADLGLPAGAAGLVASVLGRVKEFTTLFAQAGLMRFATAGFVTSVA 529
            WP EAARRARRVV+ST FP+FE+FD                         X     L     LS             GGG+  S   +   C     +     RG  GG GT        LTESIVGMYIPT ADL L A  AGLVASVLGRVKEFTTLFAQAGLMRF TAGFV +VA
Sbjct: 1165 WPEEAARRARRVVKSTLFPDFETFD-------------------VVDDLDXDDDSALFKCSGLS-------------GGGVEASLRDKVEACRTSAAAASAPRRGVSGGAGT--------LTESIVGMYIPTTADLALRAAVAGLVASVLGRVKEFTTLFAQAGLMRFDTAGFVKAVA 1302
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig74.15576.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
DENN1.300e-2850.26domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
RGS2.180e-2547.75domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig74contigE_fasciculatus_S2_contig74:46549..48645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size735
Hectar predicted targeting categoryother localisation
Exons4
Cds size543
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842402.5859816-CDS-E_fasciculatus_S2_contig74:46548..466271696842402.5859816-CDS-E_fasciculatus_S2_contig74:46548..46627Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig74 46549..46627 +
1696842402.5951986-CDS-E_fasciculatus_S2_contig74:46940..471671696842402.5951986-CDS-E_fasciculatus_S2_contig74:46940..47167Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig74 46941..47167 +
1696842402.6038983-CDS-E_fasciculatus_S2_contig74:47612..477871696842402.6038983-CDS-E_fasciculatus_S2_contig74:47612..47787Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig74 47613..47787 +
1696842402.6125503-CDS-E_fasciculatus_S2_contig74:48392..484541696842402.6125503-CDS-E_fasciculatus_S2_contig74:48392..48454Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig74 48393..48454 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842402.6213675-UTR-E_fasciculatus_S2_contig74:48454..486451696842402.6213675-UTR-E_fasciculatus_S2_contig74:48454..48645Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig74 48455..48645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig74.15576.1prot_E_fasciculatus_S2_contig74.15576.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig74 46549..48454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig74.15576.1

>prot_E_fasciculatus_S2_contig74.15576.1 ID=prot_E_fasciculatus_S2_contig74.15576.1|Name=mRNA_E_fasciculatus_S2_contig74.15576.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=181bp
LACRGGAASEAGGTVDAVSGVRELRWVSETPPEAADFDDDDSVLSKCSGL
SGSGAEASLREASLRDKIEACRSTASARGRTLRVAADRTLLSLSHFTSPL
SARKRGRRGHRDWYGYHHPHGVYRRHVHPHAGGPGAARWGSRFGGLSPRA
SEGVYHALRPGRPDAVRHGGLRDLRRQPLQ*
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mRNA from alignment at E_fasciculatus_S2_contig74:46549..48645+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig74.15576.1 ID=mRNA_E_fasciculatus_S2_contig74.15576.1|Name=mRNA_E_fasciculatus_S2_contig74.15576.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2097bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig74:46549..48645+ (Ectocarpus fasciculatus EfasUO2)
TTGGCCTGCAGAGGCGGCGCGGCGAGCGAGGCGGGTGGTACAGTCGACGC
GGTTTCCGGAGTTCGAGAGCTTCGATGGGGTAAGATTTTTTTAGTTGTGT
GTGCGTATGTGTGCGTGTGTGTGAGTGCCCGTGCTCGGTGCGTTCCGAGG
GCTCTGTGCCCACGTCTTCTCAGTGTATGCGCGGTATTGGGCGTGATGGG
TTTTGCGTTGATCGTGGGTTCGATCATTGTCTTGCAACCTTCCAGCGCGT
GCAGCACAACCACCCAGTGCAGTGCGGGGGGTCTACTTTCATTTGGTTAT
GTCGGTTTTCTCTCGCCACCAGGGCCGCTGTCGCACCCTAACAACCCCAC
TTTTGCCTTGTTGGCGGTGGCCGGCGGCCGTCGCACATTAAGTTTCTGAA
ACCCCTCCAGAGGCCGCCGACTTCGACGACGACGACTCGGTGCTGTCCAA
GTGCAGCGGCCTCAGCGGCAGCGGGGCGGAAGCTTCTCTCCGCGAAGCTT
CTCTCCGCGACAAGATCGAGGCGTGTCGGTCTACAGCTTCGGCTCGGGGG
AGGACTCTGAGGGTCGCCGCAGACAGGACTTTGCTGTCCTTGAGTCACTT
CACTTCCCCGCTCTCTGCGGTGCGCTCGACAGGGGGGGAGATGGGAGGGG
CGGGGCAGGGGGGCAGGGGATCAGGGGGGCAGGGGGGGCGTGCTCACTCG
CCTGCTGTTTGTTAGTTCCATCGTATTTGTTTTGAAACACACACCTCTCT
CGCTTGTGACGGGCAACCGTGGCTGGCCCTCATGGAGCCGATTGCAACCT
TGGAGCGGTGTTTGGTAACCATTGTTGTCTAGGGAGGTTGTGATTCGTTC
CGGGTTCACTGGGGACCCCCGGGGTGACGGAGCGAACATTTCCCGGAATT
TGTGGGAGCGGAGCTGGGCAGCTAAGCGAATCCCGTCAGTTTTTGGGTTT
GTGCATTGTTTTTGCGTTGTCGCGAGCCAACAACACATAACTTGCCTTGC
CACACGCCACACGCTCAAACCATTTGAGCTCCCAAATAATGCCACCCATC
TCGTGATGAACTAGAGGAAGCGTGGGCGGCGGGGGCACCGCGACTGGTAC
GGATACCACCACCCTCACGGAGTCTATCGTCGGCATGTACATCCCCACGC
TGGCGGACCTGGGGCTGCCCGCTGGGGCAGCAGGTTTGGTGGCCTCAGTC
CTCGGGCGAGTGAAGGAGTTTACCACGCTCTTCGCCCAGGCATGTATGCA
ACTATGATATGTAGCATCCACACGGCGGGGGTAGGGAGGGATTCTGCGCT
TCTGGATGGAGCAGGGGGGGGGGCTGCATGTACGAACCGAAATCTCGGCA
ACTTTCCGGGGGTAGAAAGGCAAGCAGGAATGTTGCACATGAACTGAGTT
TTGTTGCGTTTCCGTCAAAAACAGCAGAAACGAAGTGGATGTCCTGCCGG
TCTCTCGGGTGCGCATGAAAATAGGACGGGGCGAAGTGGGTGCCTCTCCT
TTCTCTCAGCCCCCTCTCGCCGTCGGGTTTGGTCTGCCGTCGCGAGGTGA
AACAGCCTGTTGGTGCATCATTCAACCTCTCGAGGTGTCGTTGTGCGCCT
GCGCTGCGGCATTCCCATAGTTTTCCACACCCACTTCCAGCTCCGTGTGA
TGAACGACGTCTTACCGCCGCACCGCCACCGTCATCGCCTCGTCCATTTT
TTTTTGTTGATCCTCCGCCCGCGCCGTGCGTGCACGACTGGGCTCGTCCC
ACACCAACGCACGCGACGACTCGCCCCGACTGTTAATAAATCTCGGAACA
CTCCCTGCCCCCCAAAACAAAACTACAACAATAAACAAAAACAGGCCGGC
CTGATGCGGTTCGCCACGGCGGGCTTCGTGACCTCCGTCGCCAGCCGCTA
CAGTAGCGGCGGCAAGAGCGTCGCCGCCGGCAACAAGACCGGCCGCAACG
CCAACTTCCTCAGCGGCGGGGGGGGGAGGGGGCGACGGCGGGGCCGCCGC
CGCAGCAGCACCTGGCTCTGCTGGCTCGTCCTATCCTGGGGGTTCGGGTG
GGGCGCGGAACGCGTCAGGGTCCCGGTAGGTCATGGGGGAGGATGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig74:46549..48645+

>mRNA_E_fasciculatus_S2_contig74.15576.1 ID=mRNA_E_fasciculatus_S2_contig74.15576.1|Name=mRNA_E_fasciculatus_S2_contig74.15576.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=543bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig74:46549..48645+ (Ectocarpus fasciculatus EfasUO2)
TTGGCCTGCAGAGGCGGCGCGGCGAGCGAGGCGGGTGGTACAGTCGACGC
GGTTTCCGGAGTTCGAGAGCTTCGATGGGTTTCTGAAACCCCTCCAGAGG
CCGCCGACTTCGACGACGACGACTCGGTGCTGTCCAAGTGCAGCGGCCTC
AGCGGCAGCGGGGCGGAAGCTTCTCTCCGCGAAGCTTCTCTCCGCGACAA
GATCGAGGCGTGTCGGTCTACAGCTTCGGCTCGGGGGAGGACTCTGAGGG
TCGCCGCAGACAGGACTTTGCTGTCCTTGAGTCACTTCACTTCCCCGCTC
TCTGCGAGGAAGCGTGGGCGGCGGGGGCACCGCGACTGGTACGGATACCA
CCACCCTCACGGAGTCTATCGTCGGCATGTACATCCCCACGCTGGCGGAC
CTGGGGCTGCCCGCTGGGGCAGCAGGTTTGGTGGCCTCAGTCCTCGGGCG
AGTGAAGGAGTTTACCACGCTCTTCGCCCAGGCCGGCCTGATGCGGTTCG
CCACGGCGGGCTTCGTGACCTCCGTCGCCAGCCGCTACAGTAG
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