mRNA_E_fasciculatus_S2_contig74.15575.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig74.15575.1
Unique NamemRNA_E_fasciculatus_S2_contig74.15575.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig74.15575.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP3_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 3.530e-7
Identity = 28/44 (63.64%), Postives = 32/44 (72.73%), Query Frame = 2 
Query:  167 KSVHVDLDHDGITWPPPAAVVTSPGAE-DGGGMTKADSVGFGKD 295
            +SVHVDLDHD ITWPPP A  T P  E +GGG  K DS+G GK+
Sbjct: 1095 QSVHVDLDHDDITWPPPQAPDTPPAEEGEGGGTAKTDSLGSGKE 1138
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig74.15575.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
RGS3.530e-763.64domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig74contigE_fasciculatus_S2_contig74:45754..46470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size299
Hectar predicted targeting categoryother localisation
Exons2
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842402.5513222-CDS-E_fasciculatus_S2_contig74:45753..459171696842402.5513222-CDS-E_fasciculatus_S2_contig74:45753..45917Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig74 45754..45917 +
1696842402.5609398-CDS-E_fasciculatus_S2_contig74:46337..464701696842402.5609398-CDS-E_fasciculatus_S2_contig74:46337..46470Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig74 46338..46470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig74.15575.1prot_E_fasciculatus_S2_contig74.15575.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig74 45754..46470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig74.15575.1

>prot_E_fasciculatus_S2_contig74.15575.1 ID=prot_E_fasciculatus_S2_contig74.15575.1|Name=mRNA_E_fasciculatus_S2_contig74.15575.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=99bp
FPWNPPNTNPDLFDAPMYRRGCVWGGCCSRRVRRVWRRRSPAPRCLRLLG
ACSSSKVSACRPGPRRDNVATPGGGGDLPGGGGRRRHDQGGLCWVREGW
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mRNA from alignment at E_fasciculatus_S2_contig74:45754..46470+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig74.15575.1 ID=mRNA_E_fasciculatus_S2_contig74.15575.1|Name=mRNA_E_fasciculatus_S2_contig74.15575.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=717bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig74:45754..46470+ (Ectocarpus fasciculatus EfasUO2)
TTTCCTTGGAACCCGCCGAACACGAACCCTGATCTATTTGATGCCCCAAT
GTACAGGCGGGGGTGCGTGTGGGGTGGGTGTTGTAGCAGGCGGGTTCGTC
GGGTGTGGCGACGACGCAGCCCAGCTCCACGCTGCTTGAGGTTGCTAGGC
GCATGTTCAAGCAGGTGTGTACGCTCTGTGGGCTCTGCGGGGACGGCCGT
TCGTTTCTTCTTTTTTCTTTCCCCCCGTGCGTCGGACCTGCGTCTGCTGG
TCTGTGGCTACTGCACCTTTGCCTCTCGAGGTCGCCCCAGGAGCCCTCCT
CACCAACCTCTCCGTGAGGGCATGAGTACGTCGTGGGATTGTCTATCGCC
CCACCCACCGCCCACCCAGATGCAACGGTCTGGCTGGGGTCTCTCTGATG
ACAACAGCCCCGAGAGATGCACGGCTGTAGCATTGTTTGTTGAGTACGCC
CCCCCCCTTCATCCTCGCACACGGCGCCCCGCCCCCCTCCCCAACTCCTA
ACCTAGCCGCTCATCCGCCCATCCATCCCCACACGCTGAACACACCACCG
TATTCACTGCCACAACGCGCGTACGCGCACACAGCAAAGTCAGTGCATGT
CGACCTGGACCACGACGGGATAACGTGGCCACCCCCGGCGGCGGTGGTGA
CCTCCCCGGGGGCGGAGGACGGAGGAGGCATGACCAAGGCGGACTCTGTT
GGGTTCGGGAAGGATGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig74:45754..46470+

>mRNA_E_fasciculatus_S2_contig74.15575.1 ID=mRNA_E_fasciculatus_S2_contig74.15575.1|Name=mRNA_E_fasciculatus_S2_contig74.15575.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=297bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig74:45754..46470+ (Ectocarpus fasciculatus EfasUO2)
TTTCCTTGGAACCCGCCGAACACGAACCCTGATCTATTTGATGCCCCAAT
GTACAGGCGGGGGTGCGTGTGGGGTGGGTGTTGTAGCAGGCGGGTTCGTC
GGGTGTGGCGACGACGCAGCCCAGCTCCACGCTGCTTGAGGTTGCTAGGC
GCATGTTCAAGCAGCAAAGTCAGTGCATGTCGACCTGGACCACGACGGGA
TAACGTGGCCACCCCCGGCGGCGGTGGTGACCTCCCCGGGGGCGGAGGAC
GGAGGAGGCATGACCAAGGCGGACTCTGTTGGGTTCGGGAAGGATGG
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