mRNA_E_fasciculatus_S2_contig7399.15573.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7399.15573.1
Unique NamemRNA_E_fasciculatus_S2_contig7399.15573.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7399.15573.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7399contigE_fasciculatus_S2_contig7399:69..622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size555
Hectar predicted targeting categoryother localisation
Exons1
Cds size513
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842402.5023263-CDS-E_fasciculatus_S2_contig7399:68..5811696842402.5023263-CDS-E_fasciculatus_S2_contig7399:68..581Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7399 69..581 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842402.5218208-UTR-E_fasciculatus_S2_contig7399:581..6221696842402.5218208-UTR-E_fasciculatus_S2_contig7399:581..622Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7399 582..622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7399.15573.1prot_E_fasciculatus_S2_contig7399.15573.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7399 69..581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7399.15573.1

>prot_E_fasciculatus_S2_contig7399.15573.1 ID=prot_E_fasciculatus_S2_contig7399.15573.1|Name=mRNA_E_fasciculatus_S2_contig7399.15573.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=171bp
LLFACSWGLVFDQSSYIRYRQLSKPRIHLLFNEKCIEHRRKRNGPETESG
RAFYSRYPAINTTSTIFQWRAARDPLTQSRDSSFLRFNNKLNLSKTFHIF
FKIPHVPVFKIKACSRNQLRINQSECASFLSKLSFELVLPASMCGSLARL
ESRLAREIWWVESYCQTTNN*
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mRNA from alignment at E_fasciculatus_S2_contig7399:69..622+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7399.15573.1 ID=mRNA_E_fasciculatus_S2_contig7399.15573.1|Name=mRNA_E_fasciculatus_S2_contig7399.15573.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=554bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7399:69..622+ (Ectocarpus fasciculatus EfasUO2)
CTCTTGTTCGCCTGTTCTTGGGGGTTAGTTTTCGACCAATCATCTTATAT
AAGATATCGACAGCTCTCAAAACCCCGAATCCATCTTCTGTTCAATGAGA
AATGTATCGAGCATCGACGGAAAAGGAATGGCCCTGAAACCGAATCTGGC
AGGGCGTTCTATTCTCGTTACCCTGCGATAAACACCACCAGCACGATTTT
CCAATGGAGGGCGGCACGCGACCCCCTCACACAATCGAGAGACTCAAGTT
TTCTTCGATTCAACAACAAATTGAACCTGAGCAAGACATTCCACATATTT
TTCAAGATCCCACATGTTCCGGTCTTCAAAATCAAGGCTTGCTCAAGAAA
CCAACTTCGAATAAATCAATCCGAGTGTGCCTCGTTTCTGTCAAAACTGT
CGTTCGAACTTGTGTTGCCCGCCTCGATGTGCGGATCACTAGCACGGTTG
GAGTCCCGCCTAGCTCGAGAAATATGGTGGGTTGAAAGTTATTGCCAGAC
CACCAACAACTGAAAGTGCTGTCCTGCGCGGACCATGAATCCCCTCTCCC
CAGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7399:69..622+

>mRNA_E_fasciculatus_S2_contig7399.15573.1 ID=mRNA_E_fasciculatus_S2_contig7399.15573.1|Name=mRNA_E_fasciculatus_S2_contig7399.15573.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=513bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7399:69..622+ (Ectocarpus fasciculatus EfasUO2)
CTCTTGTTCGCCTGTTCTTGGGGGTTAGTTTTCGACCAATCATCTTATAT
AAGATATCGACAGCTCTCAAAACCCCGAATCCATCTTCTGTTCAATGAGA
AATGTATCGAGCATCGACGGAAAAGGAATGGCCCTGAAACCGAATCTGGC
AGGGCGTTCTATTCTCGTTACCCTGCGATAAACACCACCAGCACGATTTT
CCAATGGAGGGCGGCACGCGACCCCCTCACACAATCGAGAGACTCAAGTT
TTCTTCGATTCAACAACAAATTGAACCTGAGCAAGACATTCCACATATTT
TTCAAGATCCCACATGTTCCGGTCTTCAAAATCAAGGCTTGCTCAAGAAA
CCAACTTCGAATAAATCAATCCGAGTGTGCCTCGTTTCTGTCAAAACTGT
CGTTCGAACTTGTGTTGCCCGCCTCGATGTGCGGATCACTAGCACGGTTG
GAGTCCCGCCTAGCTCGAGAAATATGGTGGGTTGAAAGTTATTGCCAGAC
CACCAACAACTGA
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