mRNA_E_fasciculatus_S2_contig7389.15565.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7389.15565.1
Unique NamemRNA_E_fasciculatus_S2_contig7389.15565.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7389.15565.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ19_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 8.940e-62
Identity = 99/101 (98.02%), Postives = 99/101 (98.02%), Query Frame = 1 
Query:    1 MAALADFGGSGKMDRGLGRRATADVLWDQIRKLRDCAPMEGEFYPDEEPAKALAAISVALKPWSSASRETLLSMYAKIADGKRLDDLISLFLGSQEHPALR 303
            MAALADFGG  KMDRGLGRRATADVLWDQIRKLRDCAPMEGEFYPDEEPAKALAAISVALKPWSSASRETLLSMYAKIADGKRLDDLISLFLGSQEHPALR
Sbjct:    1 MAALADFGG--KMDRGLGRRATADVLWDQIRKLRDCAPMEGEFYPDEEPAKALAAISVALKPWSSASRETLLSMYAKIADGKRLDDLISLFLGSQEHPALR 99
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BLAST of mRNA_E_fasciculatus_S2_contig7389.15565.1 vs.
Match: MYND-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPW0_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 1.520e-58
Identity = 101/109 (92.66%), Postives = 103/109 (94.50%), Query Frame = 1 
Query:    1 MAALADFGGSGKMDRGLGRRATADVLWDQIRKLRDCAPMEGEFYPDEEPAKALAAISVALKPWSSASRETLLSMYAKIADGKRLDDLISLFLGSQEHPALR--CVTYMG 321
            MAALADFGG  KMDRGLGRRATADVLWDQIRKLRDCAPMEGEFYPDEEPAKALAAISVALKPWSSASRETLLSMYAKIADGKRLDDLISLFLGSQEHPALR  C+  +G
Sbjct:    1 MAALADFGG--KMDRGLGRRATADVLWDQIRKLRDCAPMEGEFYPDEEPAKALAAISVALKPWSSASRETLLSMYAKIADGKRLDDLISLFLGSQEHPALRYACLELLG 107
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7389.15565.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized8.940e-6298.02protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
MYND-type1.520e-5892.66domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7389contigE_fasciculatus_S2_contig7389:37..2646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size321
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_001220.1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842401.6611283-CDS-E_fasciculatus_S2_contig7389:36..1541696842401.6611283-CDS-E_fasciculatus_S2_contig7389:36..154Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7389 37..154 -
1696842401.6715515-CDS-E_fasciculatus_S2_contig7389:557..6731696842401.6715515-CDS-E_fasciculatus_S2_contig7389:557..673Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7389 558..673 -
1696842401.6855123-CDS-E_fasciculatus_S2_contig7389:2559..26461696842401.6855123-CDS-E_fasciculatus_S2_contig7389:2559..2646Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7389 2560..2646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7389.15565.1prot_E_fasciculatus_S2_contig7389.15565.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7389 37..2646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7389.15565.1

>prot_E_fasciculatus_S2_contig7389.15565.1 ID=prot_E_fasciculatus_S2_contig7389.15565.1|Name=mRNA_E_fasciculatus_S2_contig7389.15565.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=107bp
MAALADFGGSGKMDRGLGRRATADVLWDQIRKLRDCAPMEGEFYPDEEPA
KALAAISVALKPWSSASRETLLSMYAKIADGKRLDDLISLFLGSQEHPAL
RCVTYMG
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mRNA from alignment at E_fasciculatus_S2_contig7389:37..2646-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7389.15565.1 ID=mRNA_E_fasciculatus_S2_contig7389.15565.1|Name=mRNA_E_fasciculatus_S2_contig7389.15565.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2610bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7389:37..2646- (Ectocarpus fasciculatus EfasUO2)
ATGGCTGCGCTTGCAGATTTCGGTGGCAGTGGGAAGATGGATCGCGGGCT
GGGGAGACGGGCAACAGCAGATGTTCTCTGGGATCAGGTTAGTAAAATTC
GTCTTAAAAATAACATTTCCTCTGAGTTTGAAATGCAACGTACGCTGTGA
GAGGTGCTGCTGCTATCATAGGTTGGGTTAAAAGCGTCGGTGACACTAGC
TGTTGTCCTGTCCTACCTCTTTACAGCAGCAGTGTAAATTGTATGCATAC
TTGTTTTCACTTGGGACCGCCATCAAGTGCCAAACCTGCCTCTGCAAGCA
TACATGCGAGGCACGAAGAGACCTGTTCCCTCCTCAGGAGCAGTAGAAGA
AGTGCATGGGAGAGCTAGGGGCATTGTGTGTGTGTTTGCTTGGCTATGGA
CAGACAGCGGTTGCTCCACTTTTATGTGTCCCTGGAGTGTCACGAAGACG
GTTGTTTGTTGTTTCGCCCACTGCTCGCGGGGATATGCCCGGTCCATGCA
TGATCCACTACCGTTGTCACCCGGTGATACAGCGGTCACTATAATACACT
ATTGTATGTAGAATTTCGAACCAAAACACCCACTCAACTCATTGGCGGAC
TCCTGCGCAAGTCGCCGCCGGATTCGAGGTGTAGCGCGCACAACACACAG
CCGTCAGTTACGGCTCGCCCTCGAACGCCGCGCCTGCTGCTGGCTTGTTG
CACGAAGAAGTTCATTTCTTTAAGGGACCGGTGGAGTTGTGCAAATCTCC
TCTGAGGTGAACCAGGATGGTTTTCCCAACGTCTGAATTTCATCACGAAT
CCACTATCGCGACAACGCGTCCGCACCGTCGTGTGTGTGATACGCTTGTA
GGTTTGCGGCCCACTGCCGCGTGCGGTCCAGTACCGCTTTGCGGTCCTCG
ATTTCTGAAACGAGCGTTTTCTCCTCGACTTCGGTGAGCTACGAGCAGAA
TTTTGAACGCTCGGACCGCACAGCCGAATCCAAAGTCAGTCAGTCCTGTT
CGTACCTCGTACATACCTCACCTCACCGAAGTCCATGACCAAAGGCTCGT
TTCGAACATCCGCGGACCGCGAAAGATATGGTGCGGTGGTATACCACAAG
GGCGACCTTCCTAGGCATTTGCTAACTCGGCGTGACGTGGGCGCACGCAT
TTTGGCGCGATGGTAATCTACAGCTCAGTACTCGAGTTTGAAGTTTGAAG
ACTTTGGGACACCAAGTTAAAGTTAAGAACCGTTTCATGGTTGGCTGAAG
AGGAGCAACACCACCGCCTCCTTCAACCTTTCCGTTCCATAGTTGTCGTT
TTGACGCACACCTGTGTGCGACTACGTGTACTCCGCTACTGTACCTGTGC
GGGAACTGCACGAATTCCTCATGGATCTGATTTGTTCCCGCACCCCCTTT
GTGGGGTACTTGGAGATAATTCGCGTGCGAAGTACGGAATAGTCACAGCG
GATAGTTGCTGCTGTGTCCGGGATCCATGTTACTAGTCATTGTTTGGCCA
AAAAGTGGAACCTTTTTTATAGGGTTTCCCCACAGCGGGTGTGCTGCTGT
TGCCATGTTGTGACAGATGAGGAGTATCGCCGCCAGCTTATGTGGGGAGA
GTTGTTATCGCTATAGCCTCCAACATCTCGCTCTCGAATCCGCGCGCAGT
ACACGGCGGTGCCTCTCTGGCCACGTCTAGAAAGTAGCGAAAGAGACGAG
TTGAGGGTGCTCGAAAGTAATACTATCGTGCCTCCTCGGCCGTTGTCGTC
TAAAACGCCACCACATCATCCACCCAACGACAACGGTTTGTAGTTTGATG
GCATCACCATCACCATCAGCACCACCACTACCACCACCAGCAACACCAAT
AACGCCGAACCCGCCGTGGAGGGCCGGATCTGCGACGGCCTTTTTTTTTT
TTGTTCCTGGGAGTAACGCCTCCTTCGTTTCCAATCCCTTGGTTGCGTTT
CGTTGTTGTTGCTCGTCCCTCAGATCCGCAAGCTTCGTGACTGCGCGCCT
ATGGAGGGCGAGTTCTATCCGGACGAGGAGCCGGCGAAGGCTCTCGCTGC
CATCAGCGTGGCCCTCAAGCCCTGGAGTTCTGCCTCCAGGTGCGACGGCA
TAACCACCGTATGCACAGGCTTTTCCCCCTTTGTATGTATGCAACGGTGG
ATGTATTGCGAGGCCAACGGGGGAGAAACGCTATTTTGCACCACCATGTA
TGCATGCTGCTGGTGCTGCGTACCGTGCGATACTGCTGCTTTTGTGTGTC
CATTCGTCGGGCTGACCTGCAGGGGAAACGCTACAATACGTGTTGCTGCT
GCTTCGTACCATGCGATACTGCTGCTTTTGTGTGTTCGTTTTTTCGGGTC
GAGGAGAGAGGCCGGACGGAGAGCATTTGAGCGAAAAAAGGGCGGGACGG
TCAATCGCTGTCGCGACTGCTGTCAGACGCCTGACGACGACCGCTCCCCG
GTCCCCTACATACCCACAATACCCCATCTGCCTCTCGCGCAGGGAAACCC
TGCTGAGCATGTACGCGAAGATCGCGGACGGAAAGCGGCTGGACGACTTA
ATTTCGCTTTTCCTGGGCAGCCAGGAGCACCCCGCGTTAAGGTGTGTTAC
CTATATGGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7389:37..2646-

>mRNA_E_fasciculatus_S2_contig7389.15565.1 ID=mRNA_E_fasciculatus_S2_contig7389.15565.1|Name=mRNA_E_fasciculatus_S2_contig7389.15565.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=321bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7389:37..2646- (Ectocarpus fasciculatus EfasUO2)
ATGGCTGCGCTTGCAGATTTCGGTGGCAGTGGGAAGATGGATCGCGGGCT
GGGGAGACGGGCAACAGCAGATGTTCTCTGGGATCAGATCCGCAAGCTTC
GTGACTGCGCGCCTATGGAGGGCGAGTTCTATCCGGACGAGGAGCCGGCG
AAGGCTCTCGCTGCCATCAGCGTGGCCCTCAAGCCCTGGAGTTCTGCCTC
CAGGGAAACCCTGCTGAGCATGTACGCGAAGATCGCGGACGGAAAGCGGC
TGGACGACTTAATTTCGCTTTTCCTGGGCAGCCAGGAGCACCCCGCGTTA
AGGTGTGTTACCTATATGGGG
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