mRNA_E_fasciculatus_S2_contig7387.15564.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7387.15564.1
Unique NamemRNA_E_fasciculatus_S2_contig7387.15564.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7387.15564.1 vs.
Match: RME1, (RME-1/EHD family ATPase with a C-terminal EH domain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G401_ECTSI)

HSP 1 Score: 485 bits (1249), Expect = 4.460e-168
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 1 
Query:    1 MADQDEATAAVVEGLKRLYHTKLKPLEQTYMFGWFHSPPLTDSEFESKPQVLMCGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGSDERVVPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIVDTPGVLSGEKQRVSRGYDFVNVCHWFAERADLILLLFDAHKLDISDEFKAVIERLKGQDDKIRVILNKADQVDRQKLMRVYGALMWSMGKIIRTPEV 717
            MADQDEATAAVVEGLKRLYHTKLKPLEQTYMFGWFHSPPLTDSEFESKPQVLMCGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGSDERVVPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIVDTPGVLSGEKQRVSRGYDFVNVCHWFAERADLILLLFDAHKLDISDEFKAVIERLKGQDDKIRVILNKADQVDRQKLMRVYGALMWSMGKIIRTPEV
Sbjct:    3 MADQDEATAAVVEGLKRLYHTKLKPLEQTYMFGWFHSPPLTDSEFESKPQVLMCGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGSDERVVPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIVDTPGVLSGEKQRVSRGYDFVNVCHWFAERADLILLLFDAHKLDISDEFKAVIERLKGQDDKIRVILNKADQVDRQKLMRVYGALMWSMGKIIRTPEV 241
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BLAST of mRNA_E_fasciculatus_S2_contig7387.15564.1 vs.
Match: RME1, (RME-1/EHD family ATPase with a C-terminal EH domain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYV9_9STRA)

HSP 1 Score: 432 bits (1111), Expect = 4.860e-147
Identity = 212/239 (88.70%), Postives = 226/239 (94.56%), Query Frame = 1 
Query:    1 MADQDEATAAVVEGLKRLYHTKLKPLEQTYMFGWFHSPPLTDSEFESKPQVLMCGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGSDERVVPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIVDTPGVLSGEKQRVSRGYDFVNVCHWFAERADLILLLFDAHKLDISDEFKAVIERLKGQDDKIRVILNKADQVDRQKLMRVYGALMWSMGKIIRTPEV 717
            MAD+DEAT AV++GLK+LYHTKLKPLE  Y+F  FHSP LTDSEF+SKPQVLM GQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDG+DERV+PGNALTVSPNLPYRGLDRFGV+FLNKFE SQLPSPVLRNITIVDTPGVLSGEKQRV+RGYDFV V  WFAERADLILLLFDAHKLDISDEF+AVIE+L+GQDDKIR ILNKAD VDRQKLMRVYGALMWSMGKII+TPEV
Sbjct:    3 MADRDEATKAVIDGLKKLYHTKLKPLESCYLFDHFHSPLLTDSEFDSKPQVLMIGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGADERVIPGNALTVSPNLPYRGLDRFGVAFLNKFEGSQLPSPVLRNITIVDTPGVLSGEKQRVARGYDFVQVNTWFAERADLILLLFDAHKLDISDEFRAVIEKLRGQDDKIRCILNKADAVDRQKLMRVYGALMWSMGKIIKTPEV 241
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BLAST of mRNA_E_fasciculatus_S2_contig7387.15564.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TT03_9STRA)

HSP 1 Score: 372 bits (955), Expect = 1.520e-127
Identity = 178/239 (74.48%), Postives = 207/239 (86.61%), Query Frame = 1 
Query:    1 MADQDEATAAVVEGLKRLYHTKLKPLEQTYMFGWFHSPPLTDSEFESKPQVLMCGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGSDERVVPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIVDTPGVLSGEKQRVSRGYDFVNVCHWFAERADLILLLFDAHKLDISDEFKAVIERLKGQDDKIRVILNKADQVDRQKLMRVYGALMWSMGKIIRTPEV 717
            M D+D AT  V+E LK LY   + P+EQ Y +  F+SP LT+SEFESKPQVLM GQYSTGKTSFI+Y++GRDFPG R+GPEPTTDRFVAVMDG DERV+PGNAL V+P+LPY GL ++GV+FLN+FE SQL S VLRNI+IVDTPGVLSGEKQR++RGYDF  VC WFA+R+DLILLLFDAHKLDISDEFK+VI+ LKG +DKIR ILNKADQVDRQKLMRVYGALMWS+GK++  PEV
Sbjct:    3 MVDRDAATQQVIESLKALYTQYILPVEQQYHYEHFYSPLLTESEFESKPQVLMIGQYSTGKTSFIKYIIGRDFPGIRVGPEPTTDRFVAVMDGPDERVIPGNALAVAPHLPYSGLQQYGVNFLNRFEGSQLSSQVLRNISIVDTPGVLSGEKQRLTRGYDFTEVCQWFAQRSDLILLLFDAHKLDISDEFKSVIQSLKGHEDKIRCILNKADQVDRQKLMRVYGALMWSLGKVVENPEV 241
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BLAST of mRNA_E_fasciculatus_S2_contig7387.15564.1 vs.
Match: Ehd1 (protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WW14_SYMMI)

HSP 1 Score: 371 bits (953), Expect = 3.900e-127
Identity = 176/229 (76.86%), Postives = 203/229 (88.65%), Query Frame = 1 
Query:   31 VVEGLKRLYHTKLKPLEQTYMFGWFHSPPLTDSEFESKPQVLMCGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGSDERVVPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIVDTPGVLSGEKQRVSRGYDFVNVCHWFAERADLILLLFDAHKLDISDEFKAVIERLKGQDDKIRVILNKADQVDRQKLMRVYGALMWSMGKIIRTPEV 717
            V+E LKR+Y +K+ PLE+ Y +  FHSP +TD+EF+SKPQV++ GQYS GKTSFIRYLLG+DFPG RIGPEPTTDRF AVMDG DERV+PGNAL VS +LPYRGL++FGV+FLN+FE SQLPS VLRNIT++DTPGVLSGEKQRVSRGYDF  VC WFA RADLI+LLFD HKLDISDEF+ VIE LKG +DKIR ILNKADQVDRQKLMRVYGALMWS+GK+++TPEV
Sbjct:    3 VIEELKRIYKSKIMPLEKLYQYDIFHSPIMTDAEFDSKPQVMLIGQYSVGKTSFIRYLLGKDFPGVRIGPEPTTDRFTAVMDGPDERVIPGNALAVSSDLPYRGLEQFGVAFLNRFEGSQLPSQVLRNITLIDTPGVLSGEKQRVSRGYDFQKVCTWFANRADLIILLFDTHKLDISDEFRGVIEGLKGNEDKIRCILNKADQVDRQKLMRVYGALMWSIGKVMKTPEV 231
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BLAST of mRNA_E_fasciculatus_S2_contig7387.15564.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZB1_9STRA)

HSP 1 Score: 381 bits (978), Expect = 8.260e-127
Identity = 181/236 (76.69%), Postives = 209/236 (88.56%), Query Frame = 1 
Query:   10 QDEATAAVVEGLKRLYHTKLKPLEQTYMFGWFHSPPLTDSEFESKPQVLMCGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGSDERVVPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIVDTPGVLSGEKQRVSRGYDFVNVCHWFAERADLILLLFDAHKLDISDEFKAVIERLKGQDDKIRVILNKADQVDRQKLMRVYGALMWSMGKIIRTPEV 717
            +D+AT  V++GLK +Y + + PLEQ YM+  F+SP L+DSEF+SKP V++ GQYSTGKTSFIRYL+GRDFPGQRIGPEPTTDRFVAVMDG +ERV+PGNA+ V+ NLP+RGLDRFGVSFLN+FE S  PS VLRNI IVDTPGVL+G KQ V+RGYDF NVC WFAERADLILLLFDAHKLDISDEFK VIE+L+G DDKIR +LNKADQVDRQKLMRVYGALMWSMGK+++TPEV
Sbjct:    9 RDQATRRVIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPGNAMAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIEKLRGHDDKIRCVLNKADQVDRQKLMRVYGALMWSMGKVMKTPEV 244
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BLAST of mRNA_E_fasciculatus_S2_contig7387.15564.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XM26_9STRA)

HSP 1 Score: 372 bits (955), Expect = 2.950e-125
Identity = 178/239 (74.48%), Postives = 207/239 (86.61%), Query Frame = 1 
Query:    1 MADQDEATAAVVEGLKRLYHTKLKPLEQTYMFGWFHSPPLTDSEFESKPQVLMCGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGSDERVVPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIVDTPGVLSGEKQRVSRGYDFVNVCHWFAERADLILLLFDAHKLDISDEFKAVIERLKGQDDKIRVILNKADQVDRQKLMRVYGALMWSMGKIIRTPEV 717
            M D+D AT  V+E LK LY   + P+EQ Y +  F+SP LT+SEFESKPQVLM GQYSTGKTSFI+Y++GRDFPG R+GPEPTTDRFVAVMDG DERV+PGNAL V+P+LPY GL ++GV+FLN+FE SQL S VLRNI+IVDTPGVLSGEKQR++RGYDF  VC WFA+R+DLILLLFDAHKLDISDEFK+VI+ LKG +DKIR ILNKADQVDRQKLMRVYGALMWS+GK++  PEV
Sbjct:    3 MVDRDAATQQVIESLKALYTQYILPVEQQYHYEHFYSPLLTESEFESKPQVLMIGQYSTGKTSFIKYIIGRDFPGIRVGPEPTTDRFVAVMDGPDERVIPGNALAVAPHLPYSGLQQYGVNFLNRFEGSQLSSQVLRNISIVDTPGVLSGEKQRLTRGYDFTEVCQWFAQRSDLILLLFDAHKLDISDEFKSVIQSLKGHEDKIRCILNKADQVDRQKLMRVYGALMWSLGKVVENPEV 241
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BLAST of mRNA_E_fasciculatus_S2_contig7387.15564.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HF70_9STRA)

HSP 1 Score: 372 bits (955), Expect = 2.780e-124
Identity = 176/237 (74.26%), Postives = 208/237 (87.76%), Query Frame = 1 
Query:    7 DQDEATAAVVEGLKRLYHTKLKPLEQTYMFGWFHSPPLTDSEFESKPQVLMCGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGSDERVVPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIVDTPGVLSGEKQRVSRGYDFVNVCHWFAERADLILLLFDAHKLDISDEFKAVIERLKGQDDKIRVILNKADQVDRQKLMRVYGALMWSMGKIIRTPEV 717
            ++D AT  V+  LKRLY TK+ PLEQ Y F  F+SP LTD+EF+SKPQV++ GQYS GKT+FIRYLLG+DFPGQRIGPEPTTDRF A++DG DERV+PGNAL VS ++PYRGL+RFGV+FLN+FE +QLP+ VL+NIT++DTPGVLSGEKQRV+RGYDF  VC WFA RADLI+LLFDAHKLDISDEF+  I+ LKG DDKIR ILNKADQVDRQKLMRVYGALMWS+GK+I++PEV
Sbjct:    5 EKDAATMRVIAELKRLYKTKILPLEQLYKFDVFNSPHLTDAEFDSKPQVMLLGQYSVGKTTFIRYLLGQDFPGQRIGPEPTTDRFTAIIDGPDERVIPGNALAVSHDMPYRGLERFGVAFLNRFEGAQLPNQVLKNITLIDTPGVLSGEKQRVARGYDFCQVCTWFAGRADLIILLFDAHKLDISDEFRNAIDSLKGNDDKIRCILNKADQVDRQKLMRVYGALMWSLGKVIKSPEV 241
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BLAST of mRNA_E_fasciculatus_S2_contig7387.15564.1 vs.
Match: Uncharacterized (protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G737_9STRA)

HSP 1 Score: 365 bits (937), Expect = 2.220e-121
Identity = 173/229 (75.55%), Postives = 200/229 (87.34%), Query Frame = 1 
Query:   31 VVEGLKRLYHTKLKPLEQTYMFGWFHSPPLTDSEFESKPQVLMCGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGSDERVVPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIVDTPGVLSGEKQRVSRGYDFVNVCHWFAERADLILLLFDAHKLDISDEFKAVIERLKGQDDKIRVILNKADQVDRQKLMRVYGALMWSMGKIIRTPEV 717
            VV+GLK+LY  KL+PLE+ Y F  FHSP L+D++F++KPQVLM GQYS GKTSFI YLLGR FPGQRIGPEPTTDRFVAVM G +ER +PGNA+ VSP+LPY GL  FG +FLNKFEA+QLPS VL NIT++DTPG+LSGEKQR+ RGYDFV V  WFAER+DLILLLFDAHKLDISDEF+ VIE LKG DDKIR +LNKADQ+DRQ+LMRVYGALMWSMGK+++TPEV
Sbjct:   44 VVDGLKKLYAQKLRPLEKKYEFDEFHSPLLSDADFDAKPQVLMIGQYSVGKTSFIEYLLGRSFPGQRIGPEPTTDRFVAVMYGDEERTIPGNAVAVSPDLPYGGLSMFGTAFLNKFEAAQLPSKVLENITVIDTPGILSGEKQRIQRGYDFVQVARWFAERSDLILLLFDAHKLDISDEFQRVIEVLKGHDDKIRCVLNKADQIDRQRLMRVYGALMWSMGKVLKTPEV 272
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BLAST of mRNA_E_fasciculatus_S2_contig7387.15564.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKL1_9STRA)

HSP 1 Score: 365 bits (938), Expect = 2.310e-121
Identity = 172/239 (71.97%), Postives = 207/239 (86.61%), Query Frame = 1 
Query:    1 MADQDEATAAVVEGLKRLYHTKLKPLEQTYMFGWFHSPPLTDSEFESKPQVLMCGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGSDERVVPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIVDTPGVLSGEKQRVSRGYDFVNVCHWFAERADLILLLFDAHKLDISDEFKAVIERLKGQDDKIRVILNKADQVDRQKLMRVYGALMWSMGKIIRTPEV 717
            M+++D AT  V++ LK+LY  KL P+E+T+MF  F SP +TDSEF++KPQVL+ GQYSTGKT+FIRYLLG DFP QRIGPEPTTDRFVAV+   +E+V+PGNAL VSP +PYRGL++FG+SFLNKFE S LP+ VL NIT+VDTPG+LSG KQ   RGY F++VCHWFAER DLILLLFDAHKLDISDEF+AVIERLKG +DKIR +LNKADQ+DRQ+LMRVYGALMW MGK+++TPEV
Sbjct:   11 MSERDMATQQVIDELKQLYKAKLLPVEKTFMFQQFCSPFMTDSEFDAKPQVLLIGQYSTGKTTFIRYLLGSDFPNQRIGPEPTTDRFVAVLYDHEEKVIPGNALAVSPAMPYRGLEKFGMSFLNKFEGSALPNKVLENITLVDTPGILSGRKQSDDRGYQFIDVCHWFAERCDLILLLFDAHKLDISDEFRAVIERLKGHEDKIRCVLNKADQIDRQRLMRVYGALMWGMGKVLKTPEV 249
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7387.15564.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y7F8_9STRA)

HSP 1 Score: 365 bits (937), Expect = 2.990e-121
Identity = 173/229 (75.55%), Postives = 202/229 (88.21%), Query Frame = 1 
Query:   31 VVEGLKRLYHTKLKPLEQTYMFGWFHSPPLTDSEFESKPQVLMCGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGSDERVVPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIVDTPGVLSGEKQRVSRGYDFVNVCHWFAERADLILLLFDAHKLDISDEFKAVIERLKGQDDKIRVILNKADQVDRQKLMRVYGALMWSMGKIIRTPEV 717
            V+EGLKRLY TKLKPLE+ Y F  FHSP L+D++F++KPQVLM GQYS GKTSFI YLLGR FPGQRIGPEPTTDRFVAVM G +ER VPGNA+ VSP+LP+ GL  FG +FLNKFEA+Q+P  VL NIT+VDTPG+LSGEKQR++RGYDFV+V  WFAER+D+ILLLFDAHKLDISDEF+ VIE LKG DDKIR +LNKADQ+D+Q+LMRVYGALMWSMGK+++TPEV
Sbjct:   34 VIEGLKRLYATKLKPLEKKYCFDDFHSPLLSDADFDAKPQVLMIGQYSVGKTSFIEYLLGRSFPGQRIGPEPTTDRFVAVMHGDEERTVPGNAVAVSPDLPFGGLSMFGTAFLNKFEAAQVPCRVLENITVVDTPGILSGEKQRIARGYDFVHVAKWFAERSDMILLLFDAHKLDISDEFQRVIEVLKGHDDKIRCVLNKADQIDQQRLMRVYGALMWSMGKVLKTPEV 262
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7387.15564.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RME1,4.460e-168100.00RME-1/EHD family ATPase with a C-terminal EH domai... [more]
RME1,4.860e-14788.70RME-1/EHD family ATPase with a C-terminal EH domai... [more]
Hypothetical1.520e-12774.48protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Ehd13.900e-12776.86protein (Fragment) n=1 Tax=Symbiodinium microadria... [more]
Uncharacterized8.260e-12776.69protein n=1 Tax=Nannochloropsis salina CCMP1776 Ta... [more]
Hypothetical2.950e-12574.48protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]
Hypothetical2.780e-12474.26protein n=1 Tax=Spumella elongata TaxID=89044 RepI... [more]
Uncharacterized2.220e-12175.55protein n=1 Tax=Albugo candida TaxID=65357 RepID=A... [more]
Hypothetical2.310e-12171.97protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Uncharacterized2.990e-12175.55protein n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7387contigE_fasciculatus_S2_contig7387:549..3527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score487.3
Seed ortholog evalue4.3e-135
Seed eggNOG ortholog2880.D7G401
Model size741
KEGG koko:K12483
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.endocytic recycling
EggNOG OGsKOG1954@1,KOG1954@2759
Cds size741
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842401.592623-CDS-E_fasciculatus_S2_contig7387:548..6501696842401.592623-CDS-E_fasciculatus_S2_contig7387:548..650Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7387 549..650 -
1696842401.6060007-CDS-E_fasciculatus_S2_contig7387:1339..15421696842401.6060007-CDS-E_fasciculatus_S2_contig7387:1339..1542Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7387 1340..1542 -
1696842401.6186001-CDS-E_fasciculatus_S2_contig7387:2298..25451696842401.6186001-CDS-E_fasciculatus_S2_contig7387:2298..2545Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7387 2299..2545 -
1696842401.6282313-CDS-E_fasciculatus_S2_contig7387:3338..35271696842401.6282313-CDS-E_fasciculatus_S2_contig7387:3338..3527Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7387 3339..3527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7387.15564.1prot_E_fasciculatus_S2_contig7387.15564.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7387 549..3527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7387.15564.1

>prot_E_fasciculatus_S2_contig7387.15564.1 ID=prot_E_fasciculatus_S2_contig7387.15564.1|Name=mRNA_E_fasciculatus_S2_contig7387.15564.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=247bp
MADQDEATAAVVEGLKRLYHTKLKPLEQTYMFGWFHSPPLTDSEFESKPQ
VLMCGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGSDERVVP
GNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIVDTPGVLSG
EKQRVSRGYDFVNVCHWFAERADLILLLFDAHKLDISDEFKAVIERLKGQ
DDKIRVILNKADQVDRQKLMRVYGALMWSMGKIIRTPEVGTAIALG*
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mRNA from alignment at E_fasciculatus_S2_contig7387:549..3527-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7387.15564.1 ID=mRNA_E_fasciculatus_S2_contig7387.15564.1|Name=mRNA_E_fasciculatus_S2_contig7387.15564.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2979bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7387:549..3527- (Ectocarpus fasciculatus EfasUO2)
ATGGCGGATCAAGACGAGGCCACGGCGGCGGTCGTGGAGGGCCTCAAGCG
CCTGTACCACACCAAGCTTAAGCCGCTCGAGCAGACGTACATGTTCGGGT
GGTTCCACAGCCCCCCCCTCACGGATAGCGAGTTCGAGAGCAAGCCGCAG
GTGCTCATGTGCGGGCAGTACTCCACGGGAAAGACGTCGGTGAGAGTGAA
AGTGAATGTTCTGTGTCGGCGTCCAGGGTGGTCCCGATGTCGCATTTTCT
TCGTATTTCCACGCCAAGATAAGGCACCCCCATCATAAATCACTACTTTT
TCTGCCCTTAAAAATACTGTTGTCGCCGGGTGAGGTACTTTGTTGATTCT
CTTTACTAGCTCTTGATCTGAGGGCACTTTCGCCGTTTGAGTGCACGTAA
GCCGCGAAATATTCGTTTGATCGGGGGGGTACGTACGCCGTTTGGGGGTG
TGGTATCTCTGTGGGCGATGGGGGTATCTTGTGTGGAATACGGCGTGCTG
GGATCTATTCCTGTATGCGCGTGTACGTGATTTTGTGCAGCCTGTGGTAT
GGTTGTTCGTCGGTGGCGTTCTCCTGTGTGCACGGCCCGTCTCGTTGGAA
AAAATAGCAGTCCTTCATGTAACCTGTCGGGTCTTGCCGACCCGCCACTG
CCACCCTTGTCATCGGATGTGCCGTACCCTCTCTTGCTGAGGTTGAGGTT
CATATCAGTCATTCAAGACAAACCAGAGACTCTACGCCGCGCGTTCCATG
CCATTCACTCCCCTTCCTGTGCCTCCAAACCCACATCGCACCCGTTATTT
ATCCTCCATCTTACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCTTCCCCCTCCCCCCCCCCCCCCCTCGTCCTTCCTTCCCTCCCCC
TCTCCCCCCCACCCATTTCTTCTCCCTCCTTCTCCCCCCCCCCCCCCCCC
CCCCCGCGTTGCAATTTCGCCGCATCGAGCAGTTCATCCGATATCTGCTC
GGCCGCGACTTCCCGGGGCAGCGAATCGGGCCGGAGCCTACGACCGACCG
TTTCGTGGCGGTGATGGACGGGTCCGACGAGAGAGTCGTCCCCGGGAACG
CTCTGACGGTTTCGCCGAACCTTCCGTACCGCGGGCTGGACCGGTTCGGC
GTGTCGTTCCTGAACAAGTTTGAGGCGAGCCAGCTGCCCTCGCCCGTGCT
GAGGAACATCACGATTGTGGACACGCCGGGTGAGTTTGTGTTGTGGGTTA
TGATATGACGGGGCTGAGTCTCTCTCTCGTTGGTCCTCATGGTTGTTGTT
GTTGTTGTTGTTGTTGTGGTTGTTGCGCTGATGTGTTCTCTGCACTCTAA
TACAATATCCATTCCGATTTGTTCCGTGCCTTCTAACGTACGTACTGGTC
CAACTGACGCGGACGCCGTCCGTGGTCACAAGCGAACTACCCTAAAAGGG
GGCACACCTTCTAATGTCCGTACTGGTCCAACTGACGCGGACGCCTTCCG
TGGTCACAAGCCAACTACCCTAAAAGGGGGTACACCTTCTCATGTCCGTA
CTGGTCCAACTGACGCGGACGCCTGCCGTGGTGAAAGACCAACTGCTATG
TACCCGAGAAGGGCGTGTTGTGAAATCTCACAGAGGGGTAGGGTTTGGAA
GGACCCAAAGAGGTCGGCACAACAAGATCGCATTCGACCACAAACCTGTA
GCAGTGTTGACGTCAACAGAACAGTCGCTGCAGAGATATTTGTGGTTGGC
TTGCTGGCCCCCACAATTTTGTCGCATTTGGAGCACAAACGTTGAGTATG
TTTGTAACGTGAACAAGAAAAGACAAAAGTGGAAGGGATTCGTCGTTTGC
TTGCTGGTCCCCGCAATTTTGTCACATTCGAGCACAAACCTTGCAACATT
GTTGAACGTTAACAACAACGGCATCAACACTACCAGCAGCAACAGCAACA
AGAACCATAACAACATAACATGAATGACCACGCAGGTGTGCTGTCGGGAG
AGAAACAGCGGGTTTCGCGCGGGTACGACTTCGTGAACGTGTGCCATTGG
TTCGCGGAGAGGGCTGACCTCATCCTGCTCCTGTTCGACGCGCACAAGCT
GGACATCAGCGACGAGTTCAAGGCGGTGATCGAGCGGCTCAAGGGCCAGG
ATGACAAGATCAGGGTCATTCTAAACAAAGCCGATCAGGTATGTACTGCA
CTGGGAAGATTGGTACAACGGAGGTGTTGTTGTCGAGAACGGGCGTTTTG
TTGTTGGAGACGTGCCGTTTCGTTCTGAGAATGAGAATGATTACATGTCT
TGTTCTGTGGGGAAATAGGCTTTTCGTTGTTGGAATCCCCGCCCGGCGTT
TGTTGTTGTTAGAAAGAGGCGCTTCTTTGTTGTACAGAAAAGGCGGCCTA
TGGGTATTTAGGACGGAGCTTTTTACGCAGCTCAGCTAAGGGGATGATTG
TTGCACCTGGCTCTTGCCAAGTACGGGCAGGATGCCAGGCAACCAAGAAC
CGAAACAACTGCTGTTTTCTTATTACTCTTTCATGTAGTTCTGAACCGAT
CAAGTCATTGTGTGTTTCGGACACGAACGATATTTCGGTGTTCTGTGGTG
TGGTGTTTTTCGTCCTTGCGAACACGATGATGGTCTTACGAGCGCTGAAC
CAAATTCACATGCCCCCCCCTTCCGCACGCCAACAGTTAGTTCGGTTCTC
CGATGATATGTTCTTGCTTGCATGAACGCACGATGGCTCAACTATCGTGA
TTTGGTGTTGCCCCCGACACAGGGGGGCTAATTTTTCGGCTGTGGCTGTG
CGCTACCGATCCGCTCACGGTGCTTTTTTTCTGCTGCATTGTCGCGGCGT
TGTTTTTTTTGCTGTTTGTCCCTGCAGGTGGACCGGCAGAAGCTAATGAG
AGTGTACGGGGCATTGATGTGGTCGATGGGGAAGATCATCCGCACACCGG
AGGTGGGGACTGCGATAGCATTAGGTTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7387:549..3527-

>mRNA_E_fasciculatus_S2_contig7387.15564.1 ID=mRNA_E_fasciculatus_S2_contig7387.15564.1|Name=mRNA_E_fasciculatus_S2_contig7387.15564.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=741bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7387:549..3527- (Ectocarpus fasciculatus EfasUO2)
ATGGCGGATCAAGACGAGGCCACGGCGGCGGTCGTGGAGGGCCTCAAGCG
CCTGTACCACACCAAGCTTAAGCCGCTCGAGCAGACGTACATGTTCGGGT
GGTTCCACAGCCCCCCCCTCACGGATAGCGAGTTCGAGAGCAAGCCGCAG
GTGCTCATGTGCGGGCAGTACTCCACGGGAAAGACGTCGTTCATCCGATA
TCTGCTCGGCCGCGACTTCCCGGGGCAGCGAATCGGGCCGGAGCCTACGA
CCGACCGTTTCGTGGCGGTGATGGACGGGTCCGACGAGAGAGTCGTCCCC
GGGAACGCTCTGACGGTTTCGCCGAACCTTCCGTACCGCGGGCTGGACCG
GTTCGGCGTGTCGTTCCTGAACAAGTTTGAGGCGAGCCAGCTGCCCTCGC
CCGTGCTGAGGAACATCACGATTGTGGACACGCCGGGTGTGCTGTCGGGA
GAGAAACAGCGGGTTTCGCGCGGGTACGACTTCGTGAACGTGTGCCATTG
GTTCGCGGAGAGGGCTGACCTCATCCTGCTCCTGTTCGACGCGCACAAGC
TGGACATCAGCGACGAGTTCAAGGCGGTGATCGAGCGGCTCAAGGGCCAG
GATGACAAGATCAGGGTCATTCTAAACAAAGCCGATCAGGTGGACCGGCA
GAAGCTAATGAGAGTGTACGGGGCATTGATGTGGTCGATGGGGAAGATCA
TCCGCACACCGGAGGTGGGGACTGCGATAGCATTAGGTTAA
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