mRNA_E_fasciculatus_S2_contig7364.15550.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7364.15550.1
Unique NamemRNA_E_fasciculatus_S2_contig7364.15550.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7364.15550.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I6_9PHAE)

HSP 1 Score: 421 bits (1082), Expect = 1.720e-128
Identity = 257/358 (71.79%), Postives = 265/358 (74.02%), Query Frame = 2 
Query:   41 AELLFVACLPVAGGDGGQAMMGVLKA-------WREQQHRGDEGHRPPDKGFSGGEMAALAVVAGHAAAALRRVGAAASEREGVXXXXXXXXXXXXXXXXXXXXXVKEEMKHLREAMTHVSGSAKGLARQRDEARAALARAKGTLRRMVPALREARDRQLGFRHYHDLIVNMSKSVLQDGDGANAEADDERGGKDAVAPTPCHADGGXXXXXXHRCCRAASVGSHTRHNNNNIIGEDMGTRGCSPGARSNNAVLGSEGG-VPEIPGRQDPRRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSFARSGDXXXGDRFGGPAILTVLRETAAAGXGSRMGAGTGTLMRDRGRSRQRQQWT 1090
            A+LLFVACLPVA GDGGQAMMGVLKA       WREQQHRGDEGHRPPDKGFSGGEMAALAVVAG AAAALRRVGAAASERE V      XX             VKEEMKHLREAM H+SGSAKGLARQRDEARAALARAKGTLRRMVPALREARDRQLGFRHYHDLIVNMSK+VLQDGDGAN EAD ERG K  VAP PCHADG XXXXXX    RAASVGSHTRHNNN   GEDMGTRG +PGARS NA  GSEGG V E PGRQ  R A                            + FARSGD    DRF  PAILTVLRETAAAG GSR+ AG GTLMRDRGRSR+RQ+ T
Sbjct: 1058 ADLLFVACLPVACGDGGQAMMGVLKASESWLLAWREQQHRGDEGHRPPDKGFSGGEMAALAVVAGQAAAALRRVGAAASEREEVLQELDAXXADRVDETQKREEAVKEEMKHLREAMEHLSGSAKGLARQRDEARAALARAKGTLRRMVPALREARDRQLGFRHYHDLIVNMSKNVLQDGDGANPEADHERGRKGTVAPPPCHADGXXXXXXXXXXXRAASVGSHTRHNNNGSTGEDMGTRGSNPGARSTNATFGSEGGGVSETPGRQGSRLAAGGGNAPLSECGFKVSPSSPRDKVAAA-VPFARSGDDGGRDRFD-PAILTVLRETAAAGGGSRVAAGAGTLMRDRGRSRERQRRT 1413
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BLAST of mRNA_E_fasciculatus_S2_contig7364.15550.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ01_ECTSI)

HSP 1 Score: 405 bits (1040), Expect = 1.090e-126
Identity = 237/326 (72.70%), Postives = 241/326 (73.93%), Query Frame = 2 
Query:  116 AWREQQHRGDEGHRPPDKGFSGGEMAALAVVAGHAAAALRRVGAAASEREGVXXXXXXXXXXXXXXXXXXXXXVKEEMKHLREAMTHVSGSAKGLARQRDEARAALARAKGTLRRMVPALREARDRQLGFRHYHDLIVNMSKSVLQDGDGANAEADDERGGKDAVAPTPCHADGGXXXXXXHRCCRAASVGSHTRHNNNNIIGEDMGTRGCSPGARSNNAVLGSEGG-VPEIPGRQDPRRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSFARSGDXXXGDRFGGPAILTVLRETAAAGXGSRMGAGTGTLMRDRGRSRQRQQWT 1090
            AWREQQHRGDEGHRPPDKGFSG EMAALAVVAG AAAALRRVGAAASERE V      XX             VKEEMKHLREAM HVSGSAKGLARQRDEARAALARAKGTLRRMVPALREARDRQLGFRHYHDLIVNMSK+VLQDGDGAN EADDERG K  VAPTPCHAD G      HRCCR ASVGSHTRHNNN  IGEDMGTRG SPGA S  A+ GSEGG V  IPGRQ PR A                            +SFARSGD   GDRFG P ILTVLRETAAAG GSR+G G GTLMRDRGRSR RQQ T
Sbjct:  572 AWREQQHRGDEGHRPPDKGFSGREMAALAVVAGQAAAALRRVGAAASEREEVLEELDAXXADRVDETQKREEAVKEEMKHLREAMEHVSGSAKGLARQRDEARAALARAKGTLRRMVPALREARDRQLGFRHYHDLIVNMSKNVLQDGDGANPEADDERGRKGGVAPTPCHADRGGGGNGIHRCCRDASVGSHTRHNNNGSIGEDMGTRGNSPGATSTIAIFGSEGGGVSGIPGRQGPRLAAGGGSAPLSECGFKVSPSSPRDKAAAA-VSFARSGDDGGGDRFG-PEILTVLRETAAAGGGSRVGVGAGTLMRDRGRSRGRQQRT 895
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7364.15550.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.720e-12871.79protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.090e-12672.70protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7364contigE_fasciculatus_S2_contig7364:844..4200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1937
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_008000.1
Cds size996
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7364.15550.1prot_E_fasciculatus_S2_contig7364.15550.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7364 941..3356 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842400.1220639-UTR-E_fasciculatus_S2_contig7364:843..9401696842400.1220639-UTR-E_fasciculatus_S2_contig7364:843..940Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7364 844..940 +
1696842400.1738205-UTR-E_fasciculatus_S2_contig7364:3356..42001696842400.1738205-UTR-E_fasciculatus_S2_contig7364:3356..4200Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7364 3357..4200 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842400.1355445-CDS-E_fasciculatus_S2_contig7364:940..9581696842400.1355445-CDS-E_fasciculatus_S2_contig7364:940..958Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7364 941..958 +
1696842400.1463656-CDS-E_fasciculatus_S2_contig7364:1563..17671696842400.1463656-CDS-E_fasciculatus_S2_contig7364:1563..1767Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7364 1564..1767 +
1696842400.1553817-CDS-E_fasciculatus_S2_contig7364:2040..21901696842400.1553817-CDS-E_fasciculatus_S2_contig7364:2040..2190Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7364 2041..2190 +
1696842400.164254-CDS-E_fasciculatus_S2_contig7364:2732..33561696842400.164254-CDS-E_fasciculatus_S2_contig7364:2732..3356Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7364 2733..3356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7364.15550.1

>prot_E_fasciculatus_S2_contig7364.15550.1 ID=prot_E_fasciculatus_S2_contig7364.15550.1|Name=mRNA_E_fasciculatus_S2_contig7364.15550.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=332bp
MMGVLKAWREQQHRGDEGHRPPDKGFSGGEMAALAVVAGHAAAALRRVGA
AASEREGVLQELDAAAADRVDESQKRDAAVKEEMKHLREAMTHVSGSAKG
LARQRDEARAALARAKGTLRRMVPALREARDRQLGFRHYHDLIVNMSKSV
LQDGDGANAEADDERGGKDAVAPTPCHADGGGGGNGSHRCCRAASVGSHT
RHNNNNIIGEDMGTRGCSPGARSNNAVLGSEGGVPEIPGRQDPRRAAGGG
SALLSEGGFKASSSSPRDRAATAALSFARSGDDGGGDRFGGPAILTVLRE
TAAAGGGSRMGAGTGTLMRDRGRSRQRQQWT*
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mRNA from alignment at E_fasciculatus_S2_contig7364:844..4200+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7364.15550.1 ID=mRNA_E_fasciculatus_S2_contig7364.15550.1|Name=mRNA_E_fasciculatus_S2_contig7364.15550.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3357bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7364:844..4200+ (Ectocarpus fasciculatus EfasUO2)
GGGAGATCGAGAGGAGGAGGAGGAGGAGGAGGAGGAAGACGCGGAGCTGT
TGTTCGTTGCGTGCCTGCCTGTTGCGGGCGGGGACGGAGGTCAGGCCATG
ATGGGAGTGCTCAAGGTACGCGAAATTTGCTACTGGTGTGACACAGATGC
TGCAGATGACGCCGTCACGACGCCGCGCTGAACACCTTGCTTATTGTTCG
GTTCGGAGGATTATTTTTTCGGTCTATCGTTGTTGGTTTTCGTCACTTCA
TTCGGGTGGCGTAGCTTGTCGTCCAAATCGATTCCTGGCACTCGAGCGAT
ATACCATCTATCGGTAGGACCACCGGAATGCCTTTGGTGTGTTTAATAAG
ACTCGTATGAACTGCCGCTGTACTGCCCGCCACCCTTCTCGTGGGTCCTG
TCGTCTGGGGGTGCGATATGGATCGTTCTTTCAGCGTGTGTTCCAGACTT
TCGCGGATTGAGAGGTCAATTCGTATCTCTATGTAGCCAGGTTTCAAGGG
CACGCTGCGTTAACCATGAAATCGTACGATATGTGTGCCTGCAGGCATGA
AGCCGTTGCTACAATCATGTACTCCCGCCCCCTTTTGCACGTCTGTGCTA
CCATGGCACACATCGAACACTTCGAGCAACAACCAACCACGCCCCGCTCT
CCGCCACATTCGCTCACTCATATCTCTTCGCGCGGTGGGAACTTACGACG
GTTTGCCCGCCCTTCCCCAGGCATGGAGAGAGCAGCAGCACAGAGGGGAT
GAGGGTCATCGGCCACCGGACAAGGGCTTCTCCGGCGGAGAGATGGCTGC
CCTCGCTGTTGTGGCCGGACATGCGGCCGCGGCACTTCGGCGGGTAGGAG
CCGCAGCGAGCGAGAGAGAGGGGGTATTGCAGGAGCTGGACGCGGCAGCA
GCGGACAGGGTCGACGAGAGTCAGGTTGAGTGGATACGGTATCACATGGT
TGGTGTCTACATTTTTCTTCTTCGGGGAGGGTAGGGCGGGTTTGGTGGAG
TGGAGGGGAAGCGGGGATTGTTTCTGTTGAACCACAACAAGCAATTTTAT
CGTGAAAACTATGTTCATATGTTCACACGCCGTTGTGGCATGCGTGGGAC
TCCTGTTATTCAAACACCCCCACCTCCCCATTGTCCCTCGATCGTGTCCA
CGAAACACGTCGTTCGGATTCTGTACTCGGTCGGTTCGTTTGTGAAGAAA
CGGGACGCGGCGGTCAAGGAAGAGATGAAGCACCTGCGCGAGGCTATGAC
ACACGTGTCGGGGAGCGCGAAGGGGCTCGCGAGACAGAGAGATGAAGCTC
GGGCCGCGCTGGCAAGGGCTAAGGGAACACTACGGCGCATGGTACCGGTG
CGTTTGACATATCCCCGCGCTGTATCTCAATCGCTGTCACTGATTGCGTT
TTTCTTTCTTCACGTGATGCTGTGGGTAATTTTTTAGTTTGTCATCAAGC
AAGCAGAATCCAATCTACATGTAGAGTGACACGCCCGGGGTCGGGAAGGT
GGTATGTTCCTCCGACAGAACCGCCACGCAATACTTGCGACCATGTTTGG
ACGTAAGTCGTCAAAACGTTTGCCGCAAGGTTCACATGAGGTGTAGGCAA
TCGGGCATGGAAGTTGCTCCATCTCCTGAGGGACGTGTTGCTTCGGACGT
TCGCCCTCCATGGCATGATGCAGTTAGCCCTCCGGTAGTTGAAAACCGAA
GCCATTTACACGTCATGATGGTGTTCATACCCGTAGTGAAGGAACTGCTG
TACAGTACTCACGTTGGCTTCAACGTGCATCCCGCCCGATGAATTCGTCG
CCTCCGCTCCGTACCCAGGCGACACCCGATGCATCACCTTCTAACACGCT
TATCTCGCTCTGTCTCTCGCGCCCTCGTTCCTCACGCAGGCCCTCCGGGA
GGCCCGTGACCGGCAGCTTGGGTTCCGCCACTACCACGACCTAATCGTCA
ACATGTCGAAGAGCGTTCTGCAGGATGGCGACGGGGCCAACGCGGAGGCC
GACGACGAGCGAGGCGGGAAGGATGCCGTTGCCCCGACTCCATGTCACGC
CGACGGTGGCGGGGGTGGCAACGGCAGCCACCGGTGCTGTCGTGCCGCTA
GTGTTGGAAGTCACACCCGCCACAATAACAACAACATCATCGGTGAAGAC
ATGGGTACAAGGGGCTGTAGCCCGGGGGCTAGGAGCAACAACGCTGTTCT
TGGTAGCGAGGGTGGCGTTCCTGAAATCCCAGGCAGACAAGACCCCAGAC
GTGCCGCTGGTGGTGGAAGTGCTCTCCTCAGCGAAGGCGGGTTCAAGGCA
TCATCTTCTTCTCCCAGGGACAGGGCGGCGACGGCAGCATTGTCATTTGC
TCGAAGTGGAGATGACGGGGGTGGGGACAGATTTGGTGGCCCAGCAATTT
TGACCGTTTTGCGGGAGACTGCGGCAGCCGGAGGCGGGTCGAGGATGGGG
GCCGGGACGGGAACGCTGATGCGGGATAGGGGTAGATCTCGACAGCGGCA
ACAGTGGACGTAGTAGACTCTAGGGTGGGCAAGAAACTCGAAGTATCTTT
CGAGCGCGTGCGACGGGCAGGGCAGAACAACTTTGGTCATCAAGTATGGT
TGGGGCTATGGTGATGTTTATGTGCGTACTGTAGGGTGGAGGTACCGCTC
CAGCCTGTAGTTTATTTAGTATGGCCGGTTCCCTCGTGTACAGGGCTGTT
TCGGGTACACCTACGCGAAGTCCGTTCCTCGTATTCGGTTGATACGGACA
CCGTTGACGTGTCCGTCACACCTACTTGTCTGTTTCTTTCTGCTTGCGGA
GGGGAGAAACTTTCGACGAACCAGTGGTGTTTTGCAAGATTGACGGAGTG
TGATCTGGAAGTTTTTTTTATCTTTGTGCCGTTGATTGGGTAATAGTTAA
AGAGCGCACCGGTACGATATTTGCCTTGTATGAACGACATGTGTGTGGTA
CTACAGCAGTACGTGCTTTTGCTATCCAAAGGTTTGTCGGAGATTTTTCG
ACTATAAATATATCACGCTATTGATTATGCCTTCCCTACCTTTCGGAGAA
GAGAGAGCCGTTCTGCGCCTAATTCATCGCCCGCTCTACATTCATTCAGA
AAGTGACAGTCGTGGTGGAGTGTGCCTCATAACAACCAGTCGAGAACATC
GATGACAGTAGTGGTGGAGTGTGCCTCATAACAACCGGTCGAGAACGTCG
ACCTCTTGGTTTCCCAACTGTAGTGTGGCGCATATTATCCTTTGGGTGGA
CGGTCGCTGGGCTCTTCAAGTAAAAAAAAAACACGCCGCCAGCTGCGCCA
GCTGTATCTACAGTGTACTGCTTGGCACACACGATTCAATACGTGTACAG
TACCGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7364:844..4200+

>mRNA_E_fasciculatus_S2_contig7364.15550.1 ID=mRNA_E_fasciculatus_S2_contig7364.15550.1|Name=mRNA_E_fasciculatus_S2_contig7364.15550.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=996bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7364:844..4200+ (Ectocarpus fasciculatus EfasUO2)
ATGATGGGAGTGCTCAAGGCATGGAGAGAGCAGCAGCACAGAGGGGATGA
GGGTCATCGGCCACCGGACAAGGGCTTCTCCGGCGGAGAGATGGCTGCCC
TCGCTGTTGTGGCCGGACATGCGGCCGCGGCACTTCGGCGGGTAGGAGCC
GCAGCGAGCGAGAGAGAGGGGGTATTGCAGGAGCTGGACGCGGCAGCAGC
GGACAGGGTCGACGAGAGTCAGAAACGGGACGCGGCGGTCAAGGAAGAGA
TGAAGCACCTGCGCGAGGCTATGACACACGTGTCGGGGAGCGCGAAGGGG
CTCGCGAGACAGAGAGATGAAGCTCGGGCCGCGCTGGCAAGGGCTAAGGG
AACACTACGGCGCATGGTACCGGCCCTCCGGGAGGCCCGTGACCGGCAGC
TTGGGTTCCGCCACTACCACGACCTAATCGTCAACATGTCGAAGAGCGTT
CTGCAGGATGGCGACGGGGCCAACGCGGAGGCCGACGACGAGCGAGGCGG
GAAGGATGCCGTTGCCCCGACTCCATGTCACGCCGACGGTGGCGGGGGTG
GCAACGGCAGCCACCGGTGCTGTCGTGCCGCTAGTGTTGGAAGTCACACC
CGCCACAATAACAACAACATCATCGGTGAAGACATGGGTACAAGGGGCTG
TAGCCCGGGGGCTAGGAGCAACAACGCTGTTCTTGGTAGCGAGGGTGGCG
TTCCTGAAATCCCAGGCAGACAAGACCCCAGACGTGCCGCTGGTGGTGGA
AGTGCTCTCCTCAGCGAAGGCGGGTTCAAGGCATCATCTTCTTCTCCCAG
GGACAGGGCGGCGACGGCAGCATTGTCATTTGCTCGAAGTGGAGATGACG
GGGGTGGGGACAGATTTGGTGGCCCAGCAATTTTGACCGTTTTGCGGGAG
ACTGCGGCAGCCGGAGGCGGGTCGAGGATGGGGGCCGGGACGGGAACGCT
GATGCGGGATAGGGGTAGATCTCGACAGCGGCAACAGTGGACGTAG
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