mRNA_E_fasciculatus_S2_contig7360.15548.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7360.15548.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU58_ECTSI) HSP 1 Score: 207 bits (526), Expect = 1.170e-65 Identity = 112/170 (65.88%), Postives = 119/170 (70.00%), Query Frame = 1
Query: 1 CVDILSLCVLPVHAYILSRNNKGRWTKDEHERFLSVAGQLVKSKENWKWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDEGGQDSRLDPHVAAXXXXXXXXXXXXXXXXLGHDLDGGMFLPSGXXXXXXXXXXLWGDASVAYAGXXXXXXXFSMTDDSGGGFPLDNW 510
CVDI+SLCVL + ILSRN KGRWTKDEHERFLSVAGQL K+KE+W+WISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDEGGQD+ LDPHVAA LGHDLDGGMFLPSG LW DASV D GGGFPLD+W
Sbjct: 9 CVDIISLCVLAA-SRILSRN-KGRWTKDEHERFLSVAGQLGKNKESWRWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDEGGQDTSLDPHVAAAVAAETAAGAAA----LGHDLDGGMFLPSGSGGASSALAPLWADASVG--------------DADGGGFPLDSW 158
BLAST of mRNA_E_fasciculatus_S2_contig7360.15548.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL6_9PHAE) HSP 1 Score: 134 bits (337), Expect = 1.490e-37 Identity = 68/82 (82.93%), Postives = 74/82 (90.24%), Query Frame = 1
Query: 4 VDILSLCVLPVHAYILSRNNKGRWTKDEHERFLSVAGQLVKSKENWKWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDE 249
V+++SL VL + ILSRN KGRWTKDEHERFL VAGQL K+KE+WKWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDE
Sbjct: 33 VNVISLGVLAA-SRILSRN-KGRWTKDEHERFLCVAGQLGKNKESWKWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDE 112
BLAST of mRNA_E_fasciculatus_S2_contig7360.15548.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L659_9PHAE) HSP 1 Score: 131 bits (330), Expect = 2.460e-34 Identity = 99/258 (38.37%), Postives = 106/258 (41.09%), Query Frame = 1
Query: 34 VHAYILSRNNKGRWTKDEHERFLSVAGQLVKSKENWKWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDE--------------------------------------------------------------------------------------------GGQDSRLDPHVAAXXXXXXXXXXXXXXXXLGHDLDGGMFLPSGXXXXXXXXXX----LW---GDASVAYAGXXXXXXXFSMTDDSGGGFPLDNW 510
+H+Y LSRN KGRWTKDEHERFLSVAGQL K+ E+WKWIS+ VVTTRSPAQVRTHAQKYF++IGQG PFPDE G QDS LDPHVAA LGHDLD GMFLPSG LW GDAS A SM D G PLDNW
Sbjct: 13 LHSYKLSRN-KGRWTKDEHERFLSVAGQLGKTTESWKWISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDENEXXXXXXXXXXXXXXXXXXXXXXQIMATPDDARCHSPPSSGLMAVVKVPSVVSLINSYDDCGGFPQAGGIPALPPSLCSPCGLFPGFTPEQGWQDSSLDPHVAAASAETAAGAAA-----LGHDLDRGMFLPSGGSGEGSSAPPPLPPLWSGIGDASGASC-----CGSLSMPYDGSSGSPLDNW 259
BLAST of mRNA_E_fasciculatus_S2_contig7360.15548.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU61_ECTSI) HSP 1 Score: 121 bits (304), Expect = 7.280e-31 Identity = 57/75 (76.00%), Postives = 63/75 (84.00%), Query Frame = 1
Query: 49 LSRNNKGRWTKDEHERFLSVAGQLVKSKENWKWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDEGGQDSRLD 273
+ R NKGRWTKDEHERFLSV GQL K+ E+WK IS+ VVTTRSPAQVRTHAQKYF++IGQG PFPDE D RLD
Sbjct: 1 MRRRNKGRWTKDEHERFLSVVGQLGKTTESWKLISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDEPYADDRLD 75
BLAST of mRNA_E_fasciculatus_S2_contig7360.15548.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC35_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 1.360e-9 Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 1
Query: 61 NKGRWTKDEHERFLSVAGQLVKSKENWKWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDE 249
N GRWTK+EH+ FL LV +NW I+ +V TRS QVRTH QKYF+K+ +G FP+E
Sbjct: 6 NNGRWTKEEHDAFLQ---GLVLHGKNWDLIAPIV-KTRSAVQVRTHGQKYFKKVDKGERFPEE 64
BLAST of mRNA_E_fasciculatus_S2_contig7360.15548.1 vs.
Match: HTH (myb-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL1_ECTSI) HSP 1 Score: 62.0 bits (149), Expect = 5.280e-9 Identity = 32/63 (50.79%), Postives = 39/63 (61.90%), Query Frame = 1
Query: 55 RNNKGRWTKDEHERFLSVAGQLVKSKENWKWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFP 243
R NKG+WT++EHE FLS Q + S +V TRS Q+RTHAQKYF KI +G FP
Sbjct: 5 RKNKGKWTREEHEAFLSGLWQHESN-------SHALVPTRSALQIRTHAQKYFDKIERGEKFP 60
BLAST of mRNA_E_fasciculatus_S2_contig7360.15548.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA96_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 5.590e-9 Identity = 40/90 (44.44%), Postives = 42/90 (46.67%), Query Frame = 1
Query: 241 PDEGGQDSRLDPHVAAXXXXXXXXXXXXXXXXLGHDLDGGMFLPSGXXXXXXXXXXLWGDASVAYAGXXXXXXXFSMTDDSGGGFPLDNW 510
P EGGQDS LDPHVAA LGHDLD GMFLPSG LW DA V AG GGGF L++W
Sbjct: 83 PGEGGQDSCLDPHVAAAAAAETAAGAAA----LGHDLDEGMFLPSGGGGGASALPPLWADAGVGDAG--------------GGGFLLESW 154
BLAST of mRNA_E_fasciculatus_S2_contig7360.15548.1 vs.
Match: probable (transcription factor At5g61620 n=2 Tax=Quercus suber TaxID=58331 RepID=UPI000CE1DF32) HSP 1 Score: 59.7 bits (143), Expect = 2.290e-8 Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 1
Query: 70 RWTKDEHERFLSVAGQLVKSKENWKWISQVVVTTRSPAQVRTHAQKYF 213
RWT++EH+ FLS QL K +WK ISQ VTT++PAQ+ +HAQKYF
Sbjct: 84 RWTEEEHKLFLSGLNQL--GKHDWKEISQKFVTTKTPAQIASHAQKYF 129
BLAST of mRNA_E_fasciculatus_S2_contig7360.15548.1 vs.
Match: Uncharacterized (protein n=2 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6Y653_HORVV) HSP 1 Score: 60.5 bits (145), Expect = 4.300e-8 Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 1
Query: 34 VHAYILSRNNKGRWTKDEHERFLSVAGQLVKSKENWKWISQVVVTTRSPAQVRTHAQKYFRKIGQG 231
+H ++++ + + WT +EH FL G + K WK IS+ +VTT++P QV +HAQKYFR+I +G
Sbjct: 114 IHPHVIAPSARKYWTDEEHMLFLHGLGVYGRGK--WKEISKYLVTTKTPVQVSSHAQKYFRRIKKG 177
BLAST of mRNA_E_fasciculatus_S2_contig7360.15548.1 vs.
Match: Uncharacterized (protein n=2 Tax=Setaria TaxID=4554 RepID=K3XYL4_SETIT) HSP 1 Score: 60.5 bits (145), Expect = 9.350e-8 Identity = 31/59 (52.54%), Postives = 37/59 (62.71%), Query Frame = 1
Query: 49 LSRNNKGRWTKDEHERFLSVAGQLVKSKENWKWISQVVVTTRSPAQVRTHAQKYFRKIG 225
+ R G WT EH FL G V + NWK IS+ VTTR+P QV +HAQKYFR+IG
Sbjct: 120 MQRLRTGFWTMPEHRLFLR--GLQVYGRGNWKNISKYFVTTRTPVQVSSHAQKYFRRIG 176 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7360.15548.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7360.15548.1 >prot_E_fasciculatus_S2_contig7360.15548.1 ID=prot_E_fasciculatus_S2_contig7360.15548.1|Name=mRNA_E_fasciculatus_S2_contig7360.15548.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=171bp CVDILSLCVLPVHAYILSRNNKGRWTKDEHERFLSVAGQLVKSKENWKWIback to top mRNA from alignment at E_fasciculatus_S2_contig7360:4020..5484- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7360.15548.1 ID=mRNA_E_fasciculatus_S2_contig7360.15548.1|Name=mRNA_E_fasciculatus_S2_contig7360.15548.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1465bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7360:4020..5484- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7360:4020..5484- >mRNA_E_fasciculatus_S2_contig7360.15548.1 ID=mRNA_E_fasciculatus_S2_contig7360.15548.1|Name=mRNA_E_fasciculatus_S2_contig7360.15548.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=513bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7360:4020..5484- (Ectocarpus fasciculatus EfasUO2)back to top |