mRNA_E_fasciculatus_S2_contig7356.15544.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7356.15544.1
Unique NamemRNA_E_fasciculatus_S2_contig7356.15544.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7356.15544.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T9_9PHAE)

HSP 1 Score: 540 bits (1392), Expect = 1.660e-165
Identity = 391/554 (70.58%), Postives = 410/554 (74.01%), Query Frame = 2 
Query:    2 LPPAAESSDHNINNDDDERTGTSPAAFPGRPESTATVEPTPRAAMRELRQPDGXXXXXXXXXXXXX----------VGPQQDWSRRFGSSRPEPRLLDEDSGDRDSQRSPKVFSGEQXXXXXXXX----EDAFSGRGRRDEAGDIRRSGSXXXXXXXXGKIKSSNSGNEASLAIHRAAEANVELRERAERAERMLATTRTRLCRALEDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------GNGCSVLGARKRGDDSGWRGGGRPRGRGRTEEARREAAPGWRQRTSPSPRSIVPASSSDTWEGESHYHSDETGERRRRVRGAEAQPPEVAGRXXXXXXXXXXXXXSLSAAGASGRVKRHGTQEEEGGVGSXXXXXXXXXXXXXXXXXLRASDVARMRQVVERLRVATYELEAERAGRAETPARAGEETEASLPRPAQCSGGVVHERGGTQQALPTMSPNVAGRGGGTPAAGAAVAAAVEREQEAAALVRENANLRRRLFGLVMLEELEGRAVREGLLPLTGGGGVAEDMFPSDK 1576
            LPP AESSDHN +NDDDERTGTSPAAFPG+P +TATVEPTP AAMRELRQPDG                       VGPQQ+WSRRFG SRPEPRLLDE +GDRDS+RSP  FSGEQXXXXXXXX    EDAFSG+GRRDEAGD RRSGSXXXX    GKI S+NSGNEASLAI RAA+ANVELRERA     MLATTRTRLCRAL +GG                      XXXXXXXXXXXXX               GN CSVLGARKRGDDSGWRGGGRPRGRGRT+EAR+E AP WRQRTSP PRS  PASSSDTW GESHYHSD+TG+RR+RVR  EAQPPEVAGR      XXXXXXXSLSA+G S RVK HGTQEEEG    XXXXXXXXXXXXXXX  LRASDVARMRQVVERLRV TYELEAERAGRA++PARAGE  E SLP PA  + G VHERGGT       SPNVA RG                EQEAAALVRENA LRRRLFGLVMLEELEGRAVREGLLPL GGGGVAEDMFPSDK
Sbjct: 2533 LPPTAESSDHNHSNDDDERTGTSPAAFPGQPGATATVEPTPGAAMRELRQPDGSSSPLRAAPPAPVQPQPAAASPAVGPQQEWSRRFGPSRPEPRLLDEGNGDRDSRRSPTAFSGEQXXXXXXXXXXXXEDAFSGKGRRDEAGD-RRSGSXXXXSGD-GKIMSTNSGNEASLAILRAAKANVELRERAXXXXXMLATTRTRLCRALGEGGGGATAATSDQSLSSGSSVGSVSXXXXXXXXXXXXXXXXXXXXXXXXXSGGGNDCSVLGARKRGDDSGWRGGGRPRGRGRTQEARKERAPEWRQRTSPPPRSNAPASSSDTWGGESHYHSDDTGDRRQRVRDEEAQPPEVAGRQQGDRQXXXXXXXSLSASGTSSRVKWHGTQEEEGRX-XXXXXXXXXXXXXXXXKQLRASDVARMRQVVERLRVVTYELEAERAGRADSPARAGEGAETSLPPPATHNSGAVHERGGTXXXXXXXSPNVASRGXXIXXXXXXX---XXXEQEAAALVRENAKLRRRLFGLVMLEELEGRAVREGLLPLAGGGGVAEDMFPSDK 3080
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BLAST of mRNA_E_fasciculatus_S2_contig7356.15544.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ7_ECTSI)

HSP 1 Score: 474 bits (1219), Expect = 3.930e-151
Identity = 344/520 (66.15%), Postives = 357/520 (68.65%), Query Frame = 2 
Query:   56 RTGTSPAAFPGRPESTATVEPTPRAAMRELRQPDGXXXXXXXXXXXXX----------VGPQQDWSRRFGSSRPEPRLLDEDSGDRDSQRSPKVFSGEQXXXXXXXXEDAFSGRGRRDEAGDIRRSGSXXXXXXXXGKIKSSNSGNEASLAIHRAAEANVELRERAERAERMLATTRTRLCRALEDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNGCSVLGARKRGDDSGWRGGGRPRGRGRTEEARREAAPGWRQRTSPSPRSIVPASSSDTWEGESHYHSDETGERRRRVRGAEAQPPEVAGRXXXXXXXXXXXXXSLSAAGASGRVKRHGTQEEEG---GVGSXXXXXXXXXXXXXXXXXLRASDVARMRQVVERLRVATYELEAERAGRAETPARAGEETEASLPRPAQCSGGVVHERGGTQQALPTMSPNVAGRGGGTPAAGAAVAAAVEREQEAAALVRENANLRRRLFGLVMLEELEGRAVREGLLPLTGGGGVAEDMFPSDK 1576
            +TGTSPAAFPG PE+TATVEPTPRAAMRELRQPDG                       VGPQQ+WSRRFGSSRPEPRLLDED+GDRDS+RSP  F GE XXXXXXXX  AFSG GRRDEAGD +R   XXXXX   GKI SSNSGNEASLAIHRAAEANVELRERAERAERMLATTRT                                                       KRGDDSGWRGGGRPRGRGRTE AR+E APGWRQRTSP PRS VPASSSDTWEGESHYHSD+TG+RR+ VR  EAQ PEVAGR      XXXXXXX       S RVK HGTQEE     G G+ XXXXXXXXXXX     LRASDVARMRQVVERLRVATYELEAERAGRA+ PARAGE  EASLP PA+ S GVVHERG TQ        NVAGR GG P               A  LVRENANLRRRLFGLVMLEELEGRAVREGLLPLTGGGGVAEDMFPSDK
Sbjct:  479 QTGTSPAAFPGWPEATATVEPTPRAAMRELRQPDGSSSPSLAAPPLPAXXXXXXXXXAVGPQQEWSRRFGSSRPEPRLLDEDNGDRDSRRSPTAFGGEXXXXXXXXXX-AFSGEGRRDEAGD-KRXXXXXXXXSGDGKIVSSNSGNEASLAIHRAAEANVELRERAERAERMLATTRT-------------------------------------------------------KRGDDSGWRGGGRPRGRGRTE-ARKEGAPGWRQRTSPPPRSNVPASSSDTWEGESHYHSDDTGDRRQLVRDEEAQSPEVAGRQQGDRQXXXXXXXXXXXXXXSSRVKWHGTQEEXXXXVGFGTRXXXXXXXXXXXQ----LRASDVARMRQVVERLRVATYELEAERAGRADAPARAGEGAEASLPPPAKRSSGVVHERGVTQXXXXXXXXNVAGRDGGIPMXXXXXXXXXXXXXXA--LVRENANLRRRLFGLVMLEELEGRAVREGLLPLTGGGGVAEDMFPSDK 934
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7356.15544.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.660e-16570.58protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.930e-15166.15protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7356contigE_fasciculatus_S2_contig7356:2102..4397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size2296
Hectar predicted targeting categoryother localisation
Exons1
Cds size1446
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842399.493959-UTR-E_fasciculatus_S2_contig7356:2101..22341696842399.493959-UTR-E_fasciculatus_S2_contig7356:2101..2234Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7356 2102..2234 +
1696842399.516625-UTR-E_fasciculatus_S2_contig7356:3680..43971696842399.516625-UTR-E_fasciculatus_S2_contig7356:3680..4397Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7356 3681..4397 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842399.5055866-CDS-E_fasciculatus_S2_contig7356:2234..36801696842399.5055866-CDS-E_fasciculatus_S2_contig7356:2234..3680Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7356 2235..3680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7356.15544.1prot_E_fasciculatus_S2_contig7356.15544.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7356 2235..3680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7356.15544.1

>prot_E_fasciculatus_S2_contig7356.15544.1 ID=prot_E_fasciculatus_S2_contig7356.15544.1|Name=mRNA_E_fasciculatus_S2_contig7356.15544.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=482bp
MRELRQPDGPSSPSPAAPAAPAVGPQQDWSRRFGSSRPEPRLLDEDSGDR
DSQRSPKVFSGEQQQQQQPPPEDAFSGRGRRDEAGDIRRSGSGGGGGSGD
GKIKSSNSGNEASLAIHRAAEANVELRERAERAERMLATTRTRLCRALED
GGGGGGATATTSDQSLNSGSGVSSISGSSASSSSSSGGNGCSVLGARKRG
DDSGWRGGGRPRGRGRTEEARREAAPGWRQRTSPSPRSIVPASSSDTWEG
ESHYHSDETGERRRRVRGAEAQPPEVAGRQQDDRRQRRRRRRSLSAAGAS
GRVKRHGTQEEEGGVGSGTGRSRVRRKEQQQQQQLRASDVARMRQVVERL
RVATYELEAERAGRAETPARAGEETEASLPRPAQCSGGVVHERGGTQQAL
PTMSPNVAGRGGGTPAAGAAVAAAVEREQEAAALVRENANLRRRLFGLVM
LEELEGRAVREGLLPLTGGGGVAEDMFPSDK*
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mRNA from alignment at E_fasciculatus_S2_contig7356:2102..4397+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7356.15544.1 ID=mRNA_E_fasciculatus_S2_contig7356.15544.1|Name=mRNA_E_fasciculatus_S2_contig7356.15544.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2296bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7356:2102..4397+ (Ectocarpus fasciculatus EfasUO2)
GCTGCCGCCGGCTGCGGAAAGCTCGGACCACAACATCAACAACGACGACG
ACGAGCGAACCGGCACAAGTCCCGCCGCCTTTCCCGGCCGGCCAGAATCA
ACGGCGACGGTGGAACCCACGCCACGTGCCGCGATGCGAGAGCTCCGACA
GCCCGACGGGCCTTCTTCGCCATCGCCGGCAGCACCAGCAGCACCAGCAG
TCGGACCACAGCAAGACTGGTCTCGACGCTTCGGCTCTTCCAGGCCGGAG
CCGCGGCTGCTGGATGAAGACAGCGGCGACCGAGATAGCCAGCGATCACC
GAAGGTTTTTAGCGGAGAGCAGCAGCAGCAGCAGCAGCCCCCTCCGGAGG
ACGCTTTTTCTGGAAGAGGACGCCGAGATGAAGCAGGAGACATACGGAGA
AGCGGCAGCGGCGGCGGCGGCGGTAGCGGCGACGGGAAGATTAAGAGCAG
CAACAGCGGGAACGAGGCGTCCCTGGCCATCCACCGCGCAGCGGAGGCAA
ACGTCGAGCTCCGGGAGCGCGCGGAGCGGGCGGAGAGGATGCTCGCGACG
ACGAGGACACGCCTGTGCAGGGCGCTCGAGGACGGCGGCGGCGGTGGCGG
CGCCACGGCCACGACAAGCGACCAGAGCCTCAACAGCGGCAGCGGCGTTA
GCAGCATTAGCGGCAGCAGCGCTAGCAGCAGCAGCAGCAGCGGCGGTAAC
GGTTGTAGCGTCCTTGGCGCGAGGAAGCGCGGGGATGACTCCGGCTGGAG
GGGCGGCGGGCGGCCTCGCGGCCGGGGGAGGACGGAAGAGGCCAGGAGAG
AGGCGGCGCCGGGGTGGCGGCAGCGAACCTCACCCTCTCCAAGGAGCATC
GTGCCCGCGTCTTCTTCGGACACGTGGGAAGGGGAGAGTCACTACCACAG
CGACGAGACGGGGGAGAGGCGGCGGCGGGTGCGGGGCGCGGAAGCACAGC
CGCCGGAGGTGGCCGGAAGACAGCAGGACGATCGGCGGCAGCGGCGGCGA
CGGAGGCGTTCTTTGAGCGCGGCGGGGGCCTCCGGCAGGGTCAAGCGCCA
CGGGACACAGGAGGAGGAAGGAGGGGTTGGGTCCGGAACCGGGCGGTCGC
GAGTACGGCGGAAGGAGCAGCAGCAGCAGCAGCAGCTGCGCGCGAGCGAC
GTGGCGCGAATGCGACAGGTGGTGGAGCGGCTGAGGGTCGCCACCTACGA
GCTGGAGGCGGAACGTGCGGGCCGGGCCGAGACACCGGCTAGGGCAGGAG
AAGAGACAGAGGCCTCGCTGCCTCGTCCTGCTCAGTGCAGCGGCGGCGTC
GTTCATGAACGCGGTGGCACCCAGCAGGCGCTTCCGACGATGTCGCCGAA
CGTAGCGGGCAGAGGCGGAGGAACACCGGCGGCGGGGGCGGCGGTGGCGG
CGGCGGTCGAGAGGGAGCAGGAGGCTGCCGCCCTCGTGCGAGAAAACGCG
AATCTTCGGCGGAGACTGTTCGGGCTGGTGATGTTGGAGGAGCTCGAGGG
GAGAGCCGTGAGGGAGGGCTTGCTGCCTTTGACGGGAGGAGGGGGGGTTG
CCGAGGACATGTTTCCGTCGGATAAATAGCTGACTTCGTAAGGGCTGGAG
TCAGCGCGATGAAAAGACAACAGCAGTGTTTGGAAACATTTGGTATGGCA
CGCGGAGTATTGTAGCTTGTTTTGAGTCCTGAGCACTGGTGGTCATGAGA
AGGGGGGGCACGTGTAGTGTAGTGTAGAGATTGCTGCCTTTCGATCACGC
GCGCTTGGGAGGGGATGCGTGACTGCCCGAGTAGCAAGTGCATGGTTCGT
TGGTCCTTCCAATAGAGATTGATTTCAATATGTAGCAATAGGTCATTTTG
AGGGTCGCACATTTAGCCGTGTGGACGGACACCTTCGCCCCCCCGGCCGA
AGACCCTGTATACTGTAGACTCCACTCCAATGAGGCTCACTCGTGAGATT
TTGAAGTGCTAGGCAAGTTTGATGCGGTCGAATAATTGTAAACAAACGCA
CCCAAGGTGGCACCCAGAACTCCAAACACTCTAGCGTCAACAACTTCAGA
CAAAATGTGTGTTGGTAAGCTTTAACCGTCCAGAGCTCTGCTCAGAAATA
TCCTAGGTGCTGATCCAATTGACACGGCGGGCTACATATATGGAGTATAA
CGACCCCCCTCTTCAAAAACAGGGTGCATTTATGGGGGGGTGTTAGCGAT
ATGTATGGCTATTATTCTGAACCATCGCACGCATATGTTCCTGGCACGAC
CTCTGGCTGGTTTCTAGTTTGTGATTATCGCACCCGGAGATTTGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7356:2102..4397+

>mRNA_E_fasciculatus_S2_contig7356.15544.1 ID=mRNA_E_fasciculatus_S2_contig7356.15544.1|Name=mRNA_E_fasciculatus_S2_contig7356.15544.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1446bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7356:2102..4397+ (Ectocarpus fasciculatus EfasUO2)
ATGCGAGAGCTCCGACAGCCCGACGGGCCTTCTTCGCCATCGCCGGCAGC
ACCAGCAGCACCAGCAGTCGGACCACAGCAAGACTGGTCTCGACGCTTCG
GCTCTTCCAGGCCGGAGCCGCGGCTGCTGGATGAAGACAGCGGCGACCGA
GATAGCCAGCGATCACCGAAGGTTTTTAGCGGAGAGCAGCAGCAGCAGCA
GCAGCCCCCTCCGGAGGACGCTTTTTCTGGAAGAGGACGCCGAGATGAAG
CAGGAGACATACGGAGAAGCGGCAGCGGCGGCGGCGGCGGTAGCGGCGAC
GGGAAGATTAAGAGCAGCAACAGCGGGAACGAGGCGTCCCTGGCCATCCA
CCGCGCAGCGGAGGCAAACGTCGAGCTCCGGGAGCGCGCGGAGCGGGCGG
AGAGGATGCTCGCGACGACGAGGACACGCCTGTGCAGGGCGCTCGAGGAC
GGCGGCGGCGGTGGCGGCGCCACGGCCACGACAAGCGACCAGAGCCTCAA
CAGCGGCAGCGGCGTTAGCAGCATTAGCGGCAGCAGCGCTAGCAGCAGCA
GCAGCAGCGGCGGTAACGGTTGTAGCGTCCTTGGCGCGAGGAAGCGCGGG
GATGACTCCGGCTGGAGGGGCGGCGGGCGGCCTCGCGGCCGGGGGAGGAC
GGAAGAGGCCAGGAGAGAGGCGGCGCCGGGGTGGCGGCAGCGAACCTCAC
CCTCTCCAAGGAGCATCGTGCCCGCGTCTTCTTCGGACACGTGGGAAGGG
GAGAGTCACTACCACAGCGACGAGACGGGGGAGAGGCGGCGGCGGGTGCG
GGGCGCGGAAGCACAGCCGCCGGAGGTGGCCGGAAGACAGCAGGACGATC
GGCGGCAGCGGCGGCGACGGAGGCGTTCTTTGAGCGCGGCGGGGGCCTCC
GGCAGGGTCAAGCGCCACGGGACACAGGAGGAGGAAGGAGGGGTTGGGTC
CGGAACCGGGCGGTCGCGAGTACGGCGGAAGGAGCAGCAGCAGCAGCAGC
AGCTGCGCGCGAGCGACGTGGCGCGAATGCGACAGGTGGTGGAGCGGCTG
AGGGTCGCCACCTACGAGCTGGAGGCGGAACGTGCGGGCCGGGCCGAGAC
ACCGGCTAGGGCAGGAGAAGAGACAGAGGCCTCGCTGCCTCGTCCTGCTC
AGTGCAGCGGCGGCGTCGTTCATGAACGCGGTGGCACCCAGCAGGCGCTT
CCGACGATGTCGCCGAACGTAGCGGGCAGAGGCGGAGGAACACCGGCGGC
GGGGGCGGCGGTGGCGGCGGCGGTCGAGAGGGAGCAGGAGGCTGCCGCCC
TCGTGCGAGAAAACGCGAATCTTCGGCGGAGACTGTTCGGGCTGGTGATG
TTGGAGGAGCTCGAGGGGAGAGCCGTGAGGGAGGGCTTGCTGCCTTTGAC
GGGAGGAGGGGGGGTTGCCGAGGACATGTTTCCGTCGGATAAATAG
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