mRNA_E_fasciculatus_S2_contig7331.15522.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7331.15522.1
Unique NamemRNA_E_fasciculatus_S2_contig7331.15522.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7331.15522.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDK8_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 7.100e-24
Identity = 56/89 (62.92%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:    1 GAVPAELGNLSALSNFQLGNTGSKFIFRRGNKVTGGPAKGESLGSWKARLRREQERKLHGDQKEANVPVPPPSLPPVVPSQQQETGEGD 267
            GAVP  L NLSALS  Q+GNT SK I RRGNK+TGGPAKGE+LG+WK R+ R+Q+  +   QKEA  P PPPS PP +  QQQE GE D
Sbjct:   16 GAVPTGLANLSALSTLQVGNTRSKAILRRGNKLTGGPAKGEALGAWKDRILRKQQA-VKDQQKEAQAPEPPPSTPPRLLPQQQEAGESD 103
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BLAST of mRNA_E_fasciculatus_S2_contig7331.15522.1 vs.
Match: Putative (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH90_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 3.450e-15
Identity = 47/80 (58.75%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:   31 SALSNFQLGNTGSKFIFRRGNKVTGGPAKGESLGSWKARLRREQERK---LHGDQKEANVPVPPPSLPPVVPSQQQETGE 261
            SALS F L NTGSK   RRGNK+TGGPAKGE L SW+AR+R +QE K   L GD+KE + P        V+  QQQETGE
Sbjct:  285 SALSKFGLKNTGSKAFLRRGNKLTGGPAKGEGLDSWRARIRPKQETKPQTLKGDEKEEDAPXXXXXXXXVLLPQQQETGE 364
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BLAST of mRNA_E_fasciculatus_S2_contig7331.15522.1 vs.
Match: Putative (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH88_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 3.780e-11
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:   40 SNFQLGNTGSKFIFRRGNKVTGGPAKGESLGSWKARLRREQERKLHGDQKEANVPVPP 213
            S  Q+GNT SK I RRGNK+TGGPAKGE+LG+WK R+ R+Q+  +   QKEA  P PP
Sbjct:  192 STLQVGNTRSKAILRRGNKLTGGPAKGEALGAWKDRILRKQQA-VKDQQKEARAPEPP 248
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7331.15522.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA2_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 2.270e-9
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   34 ALSNFQLGNTGSKFIFRRGNKVTGGPAKGESLGSWKARLRREQERKLH---GDQKEANVPVPP 213
            ALS F+ G+TG K   RRGN++TGGPA GE L SW+ RL  + + KL    GD+ E + PVPP
Sbjct:  226 ALSEFEFGSTGLKAFLRRGNRLTGGPAYGEGLDSWRERLAPKHKTKLQIFRGDRMEKDAPVPP 288
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7331.15522.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L2_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 2.440e-7
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:   64 GSKFIFRRGNKVTGGPAKGESLGSWKARLRREQE---RKLHGDQKEANVPVPPPSLPPVVPSQQQE 252
            G K   RRG+K+TGGPAKGE L SW+ R+ R  +   + L GD+KE + P P  S PPV+  QQQ+
Sbjct:   51 GLKTFLRRGDKLTGGPAKGEGLDSWRERMGRNPKTTPQTLTGDKKEEDAPAPRTSPPPVLLPQQQQ 116
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7331.15522.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized7.100e-2462.92protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Putative3.450e-1558.75Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
Putative3.780e-1160.34Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
Hypothetical2.270e-952.38leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
Hypothetical2.440e-750.00leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7331contigE_fasciculatus_S2_contig7331:881..2815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score82.0
Seed ortholog evalue1.5e-13
Seed eggNOG ortholog2880.D7FH90
Model size270
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Leucine rich repeat
EggNOG OGs2QVSR@2759,COG4886@1
Cds size267
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842397.2709472-CDS-E_fasciculatus_S2_contig7331:881..10451696842397.2709472-CDS-E_fasciculatus_S2_contig7331:881..1045Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7331 882..1045 -
1696842397.282174-CDS-E_fasciculatus_S2_contig7331:2712..28151696842397.282174-CDS-E_fasciculatus_S2_contig7331:2712..2815Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7331 2713..2815 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7331.15522.1prot_E_fasciculatus_S2_contig7331.15522.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7331 882..2815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7331.15522.1

>prot_E_fasciculatus_S2_contig7331.15522.1 ID=prot_E_fasciculatus_S2_contig7331.15522.1|Name=mRNA_E_fasciculatus_S2_contig7331.15522.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=89bp
GAVPAELGNLSALSNFQLGNTGSKFIFRRGNKVTGGPAKGESLGSWKARL
RREQERKLHGDQKEANVPVPPPSLPPVVPSQQQETGEGD
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mRNA from alignment at E_fasciculatus_S2_contig7331:881..2815-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7331.15522.1 ID=mRNA_E_fasciculatus_S2_contig7331.15522.1|Name=mRNA_E_fasciculatus_S2_contig7331.15522.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1935bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7331:881..2815- (Ectocarpus fasciculatus EfasUO2)
GGAGCCGTTCCGGCGGAGTTGGGAAACTTGAGTGCTCTTTCCAACTTTCA
GCTTGGAAACACCGGATCAAAGTTCATCTTTCGCCGTGGCAACAAGGTTA
CCGGTAAGTGCGCGCAGAAGATAGTAGTTTTTCGACAATTCTGCTGGCAG
GCTCAAACGTGGAGGACACCGGCTTGTGCCCGCATGAAGAACGCATCGAA
CAAGCAGCAAGCGAAATATCGTGTTGCTTGATCAGACTGACTACCCTCCG
ACTTCTCAACGCCCAGTTGATACACATCTCAGCGCTGCAGAGACACGACC
CTCAGCGACAACTACGAAAACCATATACTTCCTCTGGGCCAGAAAATATG
GAGGAGAAGTGGACTAGCACACTTCTATCTGAGAGTTTTTCGGATCGTTT
TTTTGGTAGCCCTCGCGAGGACTTGGACCAGAGCACAATACCAAGGTCTT
TCCTGACATGGAAACATAGCAGTACCCACCCACGGCAAGAAGAGGGTGGC
TGCCTCGAAAGACGGGAAGCGTCAGTTTGGAAGCCTTCCAATTGACAATT
TTTGAAACGGTTTTCTTTCTGGTTCTCGCGGCGTTTTGCAGAAACGCGCA
AATCCGAGACTTTGCTCAACCGACCAATATAGTACCACCTACACTCACCG
CAATCTGTCAGAGGAAGCGGTATGTAGGCAGTGCTGTGTGTGGGGCTCGG
GAAAGACCTCGGTATTGGGCTCTACACCAGAACCTCAAGAGAACAACAAA
CAAATCCGTTAGGATATTTTCGAACATGCCGACGTGCTACACCACTTTTT
GCCCTCTACCGTCGTATCCTCCGTCACACACGTAGATGTACATTAGGGAC
GATATCACAGCGTACCTGGGTTAAACGTTGCCTGTTGGCCTCGATCATCG
TGCCAAAGGGGCATAAAACGTACTGCGGCAGTCTATAGGTCTCAAATCAA
CACGAAAGCGAGCCTTCTGGAAACGGACTTGTATTGTGTTTTTTCCCAAG
CGAGCTCATATTGTTGCCCAGAGGAATGTAATTTGTCCAATTAACGATTT
GGTGCAGATTCGGCCAAGATATTATGCTTATTCGTTCACACACTACGTAT
GCGGGCCCCTACCTGTGGCCTGTGCCCGTGCTTGTCTTGAACTTGGTTCT
GCCGAATCTCTGCTGGGCTTTATTCACACCAATTGCTTATAAATGGATTC
GCCACGTCATCACATGGGCGAACGGTCGAAACGAGTCGGCCAACAACGGT
AACATTTTGTTCCAAATTCCGAGAGAGAAAAGACAAACTCTACGGAAACT
GTCACGTCTGTCCCGCCACGGTTTTCGTGATTCTTGGTCGTGCTCATTTT
TCCACTTTGTCCAAGATCTTGCCCCGGTGCGTCACTGATACCCCATTGTG
TTCCACACTGAAGTGACCATGGCCTAATGCTCCCTGTTGTTCGCACAATG
TCCTCCAAAGATCGGCTTTCGGTTAACCATTTTGTAGCCCCGACCATGAC
CGTTTTCTGCAGCTGCTGGCACGATATGGTTTTCGCATCACGAGATATTG
ATATTTGGGACGGGAGAAATGTTGGTCAACCAGACCTCCGTTTCCGTTGA
AGAACAGGGATACCCCGGACATGGAAGCTGCTGAACCGTGCGAAGCATGA
CCAAGGTCGCATGAAAATGACATGGGCTAGTAGTGGTTTGTCTTTCAGCA
CGCGAAGATTTGATACAACGACGGAAAGGAACGCGGCTCACGTTTTACGC
CTGTCACTCTTTTCGCCCAGGAGGACCGGCAAAGGGCGAGAGTCTTGGGT
CGTGGAAGGCACGGCTGAGGCGCGAACAGGAGCGTAAACTCCACGGTGAC
CAAAAGGAGGCGAACGTTCCCGTACCTCCACCCTCTCTCCCTCCCGTCGT
ACCATCACAGCAGCAGGAGACAGGCGAGGGTGACG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7331:881..2815-

>mRNA_E_fasciculatus_S2_contig7331.15522.1 ID=mRNA_E_fasciculatus_S2_contig7331.15522.1|Name=mRNA_E_fasciculatus_S2_contig7331.15522.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=267bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7331:881..2815- (Ectocarpus fasciculatus EfasUO2)
GGAGCCGTTCCGGCGGAGTTGGGAAACTTGAGTGCTCTTTCCAACTTTCA
GCTTGGAAACACCGGATCAAAGTTCATCTTTCGCCGTGGCAACAAGGTTA
CCGGAGGACCGGCAAAGGGCGAGAGTCTTGGGTCGTGGAAGGCACGGCTG
AGGCGCGAACAGGAGCGTAAACTCCACGGTGACCAAAAGGAGGCGAACGT
TCCCGTACCTCCACCCTCTCTCCCTCCCGTCGTACCATCACAGCAGCAGG
AGACAGGCGAGGGTGAC
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