mRNA_E_fasciculatus_S2_contig7331.15521.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7331.15521.1
Unique NamemRNA_E_fasciculatus_S2_contig7331.15521.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7331.15521.1 vs.
Match: Putative (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH88_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 5.420e-41
Identity = 74/97 (76.29%), Postives = 85/97 (87.63%), Query Frame = 1 
Query:    1 MEDIQRVLEAQVAGSFSPDHERGDMERRRKLGTLITMSTALGEVVLKHTEDMDERRKELALPAFSRSYYTTVRGGLSQAYLAASVIGSDWVATNKTG 291
            +EDIQRV+E+QV GS SPD ER DMER R+LGTL +MSTALGEVVLKHTEDMD ++KELALPAF R+YYT VR GL +AYLAASVI SDWV+T+KTG
Sbjct:  330 LEDIQRVIESQVPGSVSPDDERSDMERHRELGTLASMSTALGEVVLKHTEDMDVQQKELALPAFWRAYYTAVRTGLCEAYLAASVINSDWVSTSKTG 426
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BLAST of mRNA_E_fasciculatus_S2_contig7331.15521.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA2_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 3.990e-38
Identity = 71/97 (73.20%), Postives = 83/97 (85.57%), Query Frame = 1 
Query:    1 MEDIQRVLEAQVAGSFSPDHERGDMERRRKLGTLITMSTALGEVVLKHTEDMDERRKELALPAFSRSYYTTVRGGLSQAYLAASVIGSDWVATNKTG 291
            +EDIQRV+EA VAGS S D+E  DM+ RRKLGTL+TMSTALGEVVLKHTEDMD +R+EL LP FS++YYT VR G+  AYLAASVI SDWV+T+KTG
Sbjct:  343 LEDIQRVIEASVAGSVSVDNELSDMQSRRKLGTLVTMSTALGEVVLKHTEDMDVKREELTLPPFSKAYYTAVRTGICNAYLAASVIDSDWVSTSKTG 439
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BLAST of mRNA_E_fasciculatus_S2_contig7331.15521.1 vs.
Match: Putative (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH90_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.750e-37
Identity = 70/97 (72.16%), Postives = 84/97 (86.60%), Query Frame = 1 
Query:    1 MEDIQRVLEAQVAGSFSPDHERGDMERRRKLGTLITMSTALGEVVLKHTEDMDERRKELALPAFSRSYYTTVRGGLSQAYLAASVIGSDWVATNKTG 291
            +EDIQRV+E+ VAGS SPD +  D++ RRKLGTL+TMSTALGEV L+HTEDM+ +RKELALPAFS +YY+ VR GL QAYLAASVI SDWV+T+KTG
Sbjct:  431 LEDIQRVIESTVAGSVSPDDKLSDIDGRRKLGTLVTMSTALGEVALRHTEDMNIQRKELALPAFSNAYYSAVRSGLCQAYLAASVIDSDWVSTSKTG 527
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7331.15521.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 3.970e-36
Identity = 67/97 (69.07%), Postives = 81/97 (83.51%), Query Frame = 1 
Query:    1 MEDIQRVLEAQVAGSFSPDHERGDMERRRKLGTLITMSTALGEVVLKHTEDMDERRKELALPAFSRSYYTTVRGGLSQAYLAASVIGSDWVATNKTG 291
            +E+IQ  +E QVAGSF PD+E GDM+ RR LGTL+TMSTALGEV L+HTEDM+ +RKELALP FS++YYT +R GL +AYLAAS I SDWV T+KTG
Sbjct:  381 LENIQLAIERQVAGSFYPDNELGDMQSRRNLGTLVTMSTALGEVALRHTEDMNVQRKELALPPFSKAYYTAIRTGLCKAYLAASAIDSDWVITSKTG 477
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7331.15521.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L2_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 4.520e-35
Identity = 67/97 (69.07%), Postives = 77/97 (79.38%), Query Frame = 1 
Query:    1 MEDIQRVLEAQVAGSFSPDHERGDMERRRKLGTLITMSTALGEVVLKHTEDMDERRKELALPAFSRSYYTTVRGGLSQAYLAASVIGSDWVATNKTG 291
            +EDIQRV+EA    S  PD E  D++ RR LGTL+TMSTALGEV LKHTEDM  RRKELALP FS+ YY+ VR GL QAYLAASVI S+WV+T+KTG
Sbjct:  186 LEDIQRVIEATTVRSIHPDDELSDIQSRRNLGTLVTMSTALGEVALKHTEDMSVRRKELALPPFSKEYYSAVRSGLCQAYLAASVIDSNWVSTSKTG 282
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7331.15521.1 vs.
Match: Putative (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 1.320e-32
Identity = 65/97 (67.01%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:    1 MEDIQRVLEAQVAGSFSPDHERGDMERRRKLGTLITMSTALGEVVLKHTEDMDERRKELALPAFSRSYYTTVRGGLSQAYLAASVIGSDWVATNKTG 291
            +EDIQRV++A  AG F  D E  DMERRRKLG L+ M+ ALGEV L HTED D +RKELAL  FS++YYT VR GL  AYLAASVI SDWV+T+KTG
Sbjct:  498 LEDIQRVIKAPAAGGFYFDDELSDMERRRKLGALMNMAKALGEVALSHTEDKDVQRKELALAPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTSKTG 594
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BLAST of mRNA_E_fasciculatus_S2_contig7331.15521.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 8.560e-32
Identity = 65/97 (67.01%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:    1 MEDIQRVLEAQVAGSFSPDHERGDMERRRKLGTLITMSTALGEVVLKHTEDMDERRKELALPAFSRSYYTTVRGGLSQAYLAASVIGSDWVATNKTG 291
            +EDI RV++A  AGS     E  DMERRRKLGTL+ M+ ALGEV L HTEDMD +RKELAL  FS++YYT VR GL  AYLAASVI SDWV+T KTG
Sbjct:  458 LEDIHRVIKAPAAGSLDFVDEISDMERRRKLGTLVNMAKALGEVALSHTEDMDVQRKELALTPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTCKTG 554
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7331.15521.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJV0_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 3.810e-28
Identity = 64/128 (50.00%), Postives = 79/128 (61.72%), Query Frame = 1 
Query:    1 MEDIQRVLEAQVAGSFSPDHERGDMERRRKLGTLITMSTALGEV-------------------------------VLKHTEDMDERRKELALPAFSRSYYTTVRGGLSQAYLAASVIGSDWVATNKTG 291
            +EDIQRV+++ V  SF PD +  DM+ RRKL TL+TMSTALGEV                               VL+HTEDMD +RKE+ALP F ++Y T VR GL QAYLA+SVI SDWV+ +KTG
Sbjct:  185 LEDIQRVIQSTVVRSFYPDDKHSDMDGRRKLATLVTMSTALGEVAVSPVRGTIPSACTSNGLTSFSVRNWCRIWNVLRHTEDMDVQRKEMALPLFLKAYCTVVRSGLCQAYLASSVIDSDWVSMSKTG 312
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7331.15521.1 vs.
Match: Leucine (rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.460e-13
Identity = 39/97 (40.21%), Postives = 60/97 (61.86%), Query Frame = 1 
Query:    1 MEDIQRVLEAQVAGSFSPDHERGDMERRRKLGTLITMSTALGEVVLKHTEDMDERRKELALPAFSRSYYTTVRGGLSQAYLAASVIGSDWVATNKTG 291
            +E +++++EA     FSP     +     +L  L+ M+  LG++V +H  + D +R+ELALP   ++YYT +R GL  AYLAASV+ S  V T+KTG
Sbjct:  431 LEQVRQLVEALDINRFSPGTGLSETGTLGELNRLVAMAEDLGDMVSRHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTG 527
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7331.15521.1 vs.
Match: Putative (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 3.290e-12
Identity = 38/97 (39.18%), Postives = 57/97 (58.76%), Query Frame = 1 
Query:    1 MEDIQRVLEAQVAGSFSPDHERGDMERRRKLGTLITMSTALGEVVLKHTEDMDERRKELALPAFSRSYYTTVRGGLSQAYLAASVIGSDWVATNKTG 291
            +E + +++EA      SP           +L  L+ M+  LG++V +H  + D +R+ELALP   ++YYT +R GL  AYLAASV+ S  V T+KTG
Sbjct:  458 LEQVGQLVEALGINRSSPGTGLNGTGTLGELNRLVAMAEDLGDMVSRHVTNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVSSSLVCTSKTG 554
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7331.15521.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
Putative5.420e-4176.29Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
Hypothetical3.990e-3873.20leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
Putative1.750e-3772.16Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
Hypothetical3.970e-3669.07leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
Hypothetical4.520e-3569.07leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
Putative1.320e-3267.01Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
Uncharacterized8.560e-3267.01protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.810e-2850.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Leucine1.460e-1340.21rich repeat protein n=1 Tax=Ectocarpus siliculosus... [more]
Putative3.290e-1239.18Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7331contigE_fasciculatus_S2_contig7331:261..689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score150.2
Seed ortholog evalue4.9e-34
Seed eggNOG ortholog2880.D7FH88
Model size291
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Leucine rich repeat
EggNOG OGs2QVSR@2759,COG4886@1
Cds size291
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842397.2319152-CDS-E_fasciculatus_S2_contig7331:260..4161696842397.2319152-CDS-E_fasciculatus_S2_contig7331:260..416Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7331 261..416 -
1696842397.2429128-CDS-E_fasciculatus_S2_contig7331:554..6891696842397.2429128-CDS-E_fasciculatus_S2_contig7331:554..689Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7331 555..689 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7331.15521.1prot_E_fasciculatus_S2_contig7331.15521.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7331 261..689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7331.15521.1

>prot_E_fasciculatus_S2_contig7331.15521.1 ID=prot_E_fasciculatus_S2_contig7331.15521.1|Name=mRNA_E_fasciculatus_S2_contig7331.15521.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=97bp
MEDIQRVLEAQVAGSFSPDHERGDMERRRKLGTLITMSTALGEVVLKHTE
DMDERRKELALPAFSRSYYTTVRGGLSQAYLAASVIGSDWVATNKTG
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mRNA from alignment at E_fasciculatus_S2_contig7331:261..689-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7331.15521.1 ID=mRNA_E_fasciculatus_S2_contig7331.15521.1|Name=mRNA_E_fasciculatus_S2_contig7331.15521.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=429bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7331:261..689- (Ectocarpus fasciculatus EfasUO2)
ATGGAGGACATCCAACGGGTCCTTGAAGCTCAAGTCGCCGGAAGCTTTTC
TCCTGACCATGAGCGCGGCGACATGGAGAGGCGCCGAAAGCTCGGCACGT
TGATAACTATGTCAACGGCGCTCGGCGAGGTTGTGGTAAGTGTTGTCCAA
TATGCGATTCGCGCCATGTGCAGCAGCAACGACGAGGAGAGGGCTGCCAA
GGAAATACTATGTTGAAATGGACTGTGGCAAGCCGACTAATCGACAATGA
CGCAATGCTGCCCATGTTCACAGTTGAAGCACACCGAGGACATGGATGAA
CGCCGAAAGGAGTTAGCCTTGCCCGCGTTCTCGAGATCTTATTACACGAC
GGTCAGAGGAGGTCTAAGCCAGGCGTACCTCGCTGCCAGCGTCATCGGCA
GTGACTGGGTGGCCACGAACAAGACCGGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7331:261..689-

>mRNA_E_fasciculatus_S2_contig7331.15521.1 ID=mRNA_E_fasciculatus_S2_contig7331.15521.1|Name=mRNA_E_fasciculatus_S2_contig7331.15521.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=291bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7331:261..689- (Ectocarpus fasciculatus EfasUO2)
ATGGAGGACATCCAACGGGTCCTTGAAGCTCAAGTCGCCGGAAGCTTTTC
TCCTGACCATGAGCGCGGCGACATGGAGAGGCGCCGAAAGCTCGGCACGT
TGATAACTATGTCAACGGCGCTCGGCGAGGTTGTGTTGAAGCACACCGAG
GACATGGATGAACGCCGAAAGGAGTTAGCCTTGCCCGCGTTCTCGAGATC
TTATTACACGACGGTCAGAGGAGGTCTAAGCCAGGCGTACCTCGCTGCCA
GCGTCATCGGCAGTGACTGGGTGGCCACGAACAAGACCGGT
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