mRNA_E_fasciculatus_S2_contig7325.15516.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7325.15516.1
Unique NamemRNA_E_fasciculatus_S2_contig7325.15516.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7325.15516.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG2_9PHAE)

HSP 1 Score: 505 bits (1300), Expect = 4.170e-176
Identity = 250/335 (74.63%), Postives = 268/335 (80.00%), Query Frame = 1
Query:   13 GKRYCTVDELLPLERSPDSTVSSEWSEEQGGISTPPYGCDCASSKARYFCPNLGSGGYPRWVPRAVARGDCRSVTREEMS-RGAPFPPDSKVLFYGNSYMRQAVEAILCLFQKDVATKKVRFVSA-NATNTTYLEVPGDTPCRACWVWHGFKDTLLKSGCIGGDGGDDHGGEEACRCDDDRGEFLFSNGAVMHFYFADRDEDKSITDALAPHDKVDFSDYTAVFANPGNNPSIKADAVLEAAFELQAAGVPFFWLNVYEGKGDPQSWNSRQRETDFPGSGAKFVRVGDMAHGLQRLTRKVVEQLEGYDPHFCMPGPPDEVGILLLKLLWALHHNK 1011
            G RYCTVDELLPL++SP S +SSEWS+ QGG+  PPYGCDCA SKARYFCPNLGSG YPRWVPRAV RGDCRS TREEMS RGAPFPPDSKVLFYGNS+MRQ +EAILCLFQKDV +K++RFVSA NA  T YLEVPGDTPCRAC VW  FKDTLL SGCIG                        SNGAV+HFYFA+ DEDK ITDALAPH K D S YTAVFANPGN PS++ADAVL+AA ELQAAGVPFFWL+ YEGKGDPQ WNSRQRETDF  SGAKFVRV D+  GL  LTRKVVE+    DPHFCMPGPPDEVGILLLKLLWALHH K
Sbjct:  118 GIRYCTVDELLPLKKSPHSALSSEWSQGQGGVWKPPYGCDCAFSKARYFCPNLGSGVYPRWVPRAVTRGDCRSATREEMSSRGAPFPPDSKVLFYGNSHMRQTLEAILCLFQKDVVSKRLRFVSATNANETAYLEVPGDTPCRACSVWTFFKDTLLNSGCIGXXXXXXXXXXXXXXXXXXXX-XXXSNGAVVHFYFANHDEDKRITDALAPHHKEDLSYYTAVFANPGNKPSVEADAVLDAAVELQAAGVPFFWLSTYEGKGDPQRWNSRQRETDFWESGAKFVRVFDIVQGLHSLTRKVVERTVENDPHFCMPGPPDEVGILLLKLLWALHHEK 451          
BLAST of mRNA_E_fasciculatus_S2_contig7325.15516.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G974_ECTSI)

HSP 1 Score: 298 bits (762), Expect = 2.010e-98
Identity = 140/167 (83.83%), Postives = 147/167 (88.02%), Query Frame = 1
Query:  523 EACRCDDDRGEFLFSNGAVMHFYFADRDEDKSITDALAPHDKVDFSDYTAVFANPGNNPSIKADAVLEAAFELQAAGVPFFWLNVYEGKGDPQSWNSRQRETDFPGSGAKFVRVGDMAHGLQRLTRKVVEQLEGYDPHFCMPGPPDEVGILLLKLLWALHHNKNGSY 1023
            E  RCDDD GEF FSNGAV+HFYFA+RDEDK ITDALAPHDK DFS YTAVFANPGN PS++ADAVL+AAFELQAAGVPFFWL+ YEGKGDPQ WNS QRETDFPGSGAKFVRV DM  GL RLTRKVVE+    DPHFCMPGPPDEVGILLLKLLWALHH KNGSY
Sbjct:   23 ETLRCDDDHGEFFFSNGAVVHFYFANRDEDKRITDALAPHDKEDFSYYTAVFANPGNKPSVEADAVLDAAFELQAAGVPFFWLSTYEGKGDPQRWNSPQRETDFPGSGAKFVRVVDMVQGLHRLTRKVVERTVEDDPHFCMPGPPDEVGILLLKLLWALHHEKNGSY 189          
BLAST of mRNA_E_fasciculatus_S2_contig7325.15516.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P7_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 3.660e-70
Identity = 130/326 (39.88%), Postives = 185/326 (56.75%), Query Frame = 1
Query:   73 VSSEWSEEQGGISTPPYGCDCASS-------KARYFCPNLGSGGYPRWVPRAVARGDCRSVTREEMSRGAPFPPDSKVLFYGNSYMRQAVEAILCLFQKDVATKKVRFV---SANATNTTYLEVPGDTPCRACWVWHGFKDTLLKSGCIGGDGGDDHGGEEACRCDDDRGEFLFSNGAVMHFYFADRDEDKSITDALAPHDKVDFSDYTAVFANPGNNPSIKADAVLEAAFELQAAGVPFFWLNVYEGKGDPQSWNSRQRETDFPGSGAKFVRVGDMAHGLQRLTRKVVEQLEGYDPHFCMPGPPDEVGILLLKLLWALHHNKNGS 1020
            +S  W  ++  +  PP+ C C+ S        A YFCPNLG+GGYP+W       G C    R  + +  P PP  +VLFYGNS++RQ VE I+C +   + ++ +R V    + A   T ++   D  CR+C      + TLL+  CI  D       EEACRCDDD   F F NGA +H++FA ++E+K   DAL  +   ++S Y AV  N GN+P ++   VL  A  L+  GVP FW + YEG+GD  +W   ++   F  SGA+FV V  M   L+ LT+ VVE     +PHFCMPGPP+E+GILLL++ WA++  + G+
Sbjct:  113 LSGMW--DKSSMVAPPFDCTCSGSGRAGRALNASYFCPNLGTGGYPKWS----TSGGCERRERSAL-QNEPLPPGFRVLFYGNSHLRQVVEGIVCAYSSSIRSRCLRVVVDGESLAQEDTLVDE--DLQCRSCVYSRKLRRTLLEHECISEDAK-----EEACRCDDDESVFEFDNGAAIHYHFAHKEENKRFEDALQ-YRGTEYSSYDAVVGNLGNDPRMEVSEVLRVANLLKEEGVPLFWTSAYEGEGDVGAWLPEEQAL-FWDSGARFVPVHRMVKSLKYLTKGVVEGEN--NPHFCMPGPPNEIGILLLEMAWAVYAERGGA 420          
BLAST of mRNA_E_fasciculatus_S2_contig7325.15516.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF6_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 4.920e-69
Identity = 129/342 (37.72%), Postives = 188/342 (54.97%), Query Frame = 1
Query:   19 RYCTVDELLPLERSPDS-------TVSSEWSEEQGGISTPPYGCDCASSKARYFCPNLGSGGYPRWVPRAVARGDCRSVTREEMSRGAPFPPDSKVLFYGNSYMRQAVEAILCLFQKDVATKKVRFVSANATNTTY-LEVPGDTPCRACWVWHGFKDTLLKSGCIGGDGGDDHGGEEACRCDDDRGEFLFSNGAVMHFYFADRDEDKSITDALAPHDKVDFSDYTAVFANPGNNPSIKADAVLEAAFELQAAGVPFFWLNVYEGKGDPQSWNSRQRETDFPGSGAKFVRVGDMAHGLQRLTRKVVEQLEGYDPHFCMPGPPDEVGILLLKLLWALHHNKNGS 1020
            R CTVD+L+P   + +         +S  W  ++  +  PP+ C C + KA YFCPNLG+GGYP+W          RS  + E     P PP  +VLFYGNS++RQ VE I+C +   + ++ +R V    +       V  D  CR C   H  ++ LL+  CI      +   +EAC CDD+   F F NGA +H++FA ++E+K   DAL  +   ++S Y  V  N GN+P ++   VL  A  L+  GV  FW + YEG+GD  +W   ++   F  SGA+FV V  M   L+ LT+ VVE     +PHFCMPGPP+E+GILLL++ WA++  +  +
Sbjct:   91 RACTVDDLVPPHGNYEDGGGDGGYDLSGMW--DKSSMVAPPFDCTCRTLKASYFCPNLGTGGYPKWNTSGACERRERSALQNE-----PLPPAFRVLFYGNSHLRQVVEGIVCAYSTSIRSRCLRVVVGGGSLAPEDALVDEDLQCRGCVNSHKQRNMLLEHECIS-----EEAKKEACSCDDNESVFEFDNGAAIHYHFAHKEENKRFEDALK-YRGTEYSFYDVVVGNLGNDPRMEVSEVLRVANLLKEEGVTLFWTSAYEGEGDVGAWLPEEQAL-FWDSGARFVPVHRMVESLKYLTKGVVEGEN--NPHFCMPGPPNEIGILLLEMAWAVYAERGDA 416          
BLAST of mRNA_E_fasciculatus_S2_contig7325.15516.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J2_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 1.110e-63
Identity = 108/230 (46.96%), Postives = 135/230 (58.70%), Query Frame = 1
Query:  331 LCLFQKDVATKKVRFVSANATNTTYLEVPGDTPCRACWVWHGFKDTLLKSGCIGGDGGDDHGGEEACRCDDDRGEFLFSNGAVMHFYFADRDEDKSITDALAPHDKVDFSDYTAVFANPGNNPSIKADAVLEAAFELQAAGVPFFWLNVYEGKGDPQSWNSRQRETDFPGSGAKFVRVGDMAHGLQRLTRKVVEQLEGYDPHFCMPGPPDEVGILLLKLLWALHHNKNGS 1020
            +C++   V  K+  +      N     + G+  CRAC    G +   +  GC+  D  DD     ACRCDDD  EFLF NGAV+H+YFA  D +KSI DAL PH  V  S Y AV AN GN P +  D V EAA ELQA  VPF WL+ Y G+G    WN  Q+E  F  SGA+FV VG M  GL   T+  VE   G DPHFC+PGPPDE+G+LLLK++WA+H  +  +
Sbjct:    1 MCIYWNKVVAKRATYQQPG--NGVDRWIHGNAQCRACT---GLQQQQVNYGCLDQDVRDD-----ACRCDDDHAEFLFQNGAVVHYYFASTDPNKSIKDALLPHGNVSLSYYDAVVANNGNGPEMAVDVVCEAALELQALSVPFLWLSTYVGRGSVDLWNDAQQE-QFTQSGARFVNVGHMMFGLSNFTKGAVEG--GNDPHFCLPGPPDELGLLLLKIIWAIHQERGAA 217          
BLAST of mRNA_E_fasciculatus_S2_contig7325.15516.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBA5_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 1.580e-63
Identity = 110/230 (47.83%), Postives = 135/230 (58.70%), Query Frame = 1
Query:  331 LCLFQKDVATKKVRFVSANATNTTYLEVPGDTPCRACWVWHGFKDTLLKSGCIGGDGGDDHGGEEACRCDDDRGEFLFSNGAVMHFYFADRDEDKSITDALAPHDKVDFSDYTAVFANPGNNPSIKADAVLEAAFELQAAGVPFFWLNVYEGKGDPQSWNSRQRETDFPGSGAKFVRVGDMAHGLQRLTRKVVEQLEGYDPHFCMPGPPDEVGILLLKLLWALHHNKNGS 1020
            +C+    V  K+V +      N     + G+  CRAC    GF    +  GC+  D  DD     ACRCDDD  E+LF NGAV+H+YFA  D  KSI DAL PH  V  S Y AVFAN GN P +  D V EAAFELQA  VPF WL+ Y+G G    WN  Q+E  F  SGA+FV VG M  GL   T+  VE  +  DPHFC+PGPPDE+G LLLK++WAL+  +  +
Sbjct:    1 MCIHWNKVVAKRVTYQQPG--NGVDRWIHGNAQCRACT---GFDQQQVDYGCLDQDVRDD-----ACRCDDDHAEYLFQNGAVVHYYFAGTDPKKSIKDALLPHGNVSLSHYDAVFANDGNWPKMAVDDVCEAAFELQALSVPFLWLSTYDGHGSVDLWNDAQKEK-FSQSGARFVNVGHMLFGLSNFTKGAVE--DRVDPHFCLPGPPDELGFLLLKIIWALYQERGAA 217          
BLAST of mRNA_E_fasciculatus_S2_contig7325.15516.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z986_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.410e-29
Identity = 96/335 (28.66%), Postives = 139/335 (41.49%), Query Frame = 1
Query:   58 SPDSTVSSEWSEEQGGISTPPYGCDCASSKARYFCPNLGSGGYPRWVPRAVARGDCRSVTREEMSRGAPFPPDSKVLFYGNSYMRQAVEAILCLFQKDVATKKVRFVSANATNTTYLEVPGDTPCRACWVWHGFKDTLLKSGCIGGDGGDDHGGEEACRCDDDRGEFLFSNGAVMHFYFADRDEDKSITDALAPHDKVDFSDYTAVFANPGNNPSIKADAVLEAAFELQAAGV-PFFWLNVYEGKG------DPQSWNSRQRETDFPGSGAKFVRVGDM---AHGLQRLTRKVVEQLEGYDPHFCMPGPPDEVGILLLK----LLWALHHNKNGS 1020
            SP       W E++     P Y C C  +KARY C    +   P WVPRA+ +G+CR++    +      PP ++VLF GNS+MRQ VE+ LC  + +VA + V   SA       +      PCR   + H       +   +G   G          C DDR  F  SNGA + + F  R+ +K+I   + P       DY  V AN GN P +   +  +    L   G+    W+ +Y G        D ++ N+    T    +    +   D+     G+   T      L   D HFCMP P D++   L      L W L   + GS
Sbjct:   50 SPAQLADGSW-EQRTAHQEPLYDCSCPLAKARYHCHEFNAVDGPVWVPRALVKGECRALPHNPL-----VPPGARVLFAGNSHMRQLVESGLCAHRHEVARRNV---SAGVLEDISI------PCRGFRLKHYLDGCPYEPSVLGVAPGQ-------LECSDDRATFTLSNGATVSYVFMHREVNKTIDQFIGPTFGTSLRDYDIVVANAGNAPDMLLSSFADEVGPLVTQGIIKALWVPLYWGSDALDEFRDARTLNNGNLPTASQRAALDAITFFDLRILTSGVASFTVAKRAHLSR-DGHFCMPSPVDDISDTLFAHVRYLWWHLALERGGS 361          
BLAST of mRNA_E_fasciculatus_S2_contig7325.15516.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1L833_HETAK)

HSP 1 Score: 90.9 bits (224), Expect = 8.880e-17
Identity = 79/295 (26.78%), Postives = 118/295 (40.00%), Query Frame = 1
Query:  127 CDCASSKARYFCPNLGSGGYPRWVPRAVARGDCRSVTREEMSRGAPFPPDSKVLFYGNSYMRQAVEAILCLFQKDVATKKVRFVSANATNTT----YLEVPGDTPCRACWVWHGFKDTLLKSGCIGGDGGDDHGGEEACRCDDDRGEFLFSNGAVMHFYFADRDEDKSITDALAPHDKVDFSDYTAVFANPGNNPSIKADAVLEAAFELQAAGVPFFWLNVYEGKGDPQSWNSRQRETD-FPGSGAKFVRVGDMAHG-LQRLTRKVVEQLEGYDPHFCMPGPPDEVGILLLKLLW 993
            C C  +K RY C       Y  ++P A+ +G CR  T E +    P P  SK L +GNSY+RQ +EA+LC+F   +A+K+V       T        +EV G T CR    W  F        C                C D+  +  F NGA +HF ++       I   L   + + + D         N    +   +++    L       FW  + E        N  +   D F  S  +  +   +      R   K+++Q  G D HFC+PG PD+V I LL  ++
Sbjct:  110 CSCPHAKGRYHCHGKDLQAY--FLPTAIEKGLCRWHTVEYLKEN-PLPAGSKTLLFGNSYLRQLMEAVLCMFSDSIASKEVVLQEEGITRQRGKYPMVEV-GQTECRG-GPWE-FNAQHFLYDCPDSQKNQT---PNVTECYDNLMKVSFKNGAELHFIYSFESTIPYIPKQLPGVNSLQYFDVIMTNGVYANRMKAETFVMVKEKNGLDGKSPRLFWAGLNE--------NDYENAKDLFLASKIEVFKAHIINRSQCSRRVGKILQQDAG-DRHFCLPGVPDDVAISLLHFIY 386          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7325.15516.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
Uncharacterized4.170e-17674.63protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.010e-9883.83protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.660e-7039.88protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.920e-6937.72protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.110e-6346.96protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.580e-6347.83protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.410e-2928.66protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical8.880e-1726.78protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7325contigE_fasciculatus_S2_contig7325:99..6693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size1026
Hectar predicted targeting categoryother localisation
Exons5
Cds size1026
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842396.6432903-CDS-E_fasciculatus_S2_contig7325:98..3711696842396.6432903-CDS-E_fasciculatus_S2_contig7325:98..371Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7325 99..371 -
1696842396.6549504-CDS-E_fasciculatus_S2_contig7325:1463..16831696842396.6549504-CDS-E_fasciculatus_S2_contig7325:1463..1683Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7325 1464..1683 -
1696842396.665567-CDS-E_fasciculatus_S2_contig7325:3265..34831696842396.665567-CDS-E_fasciculatus_S2_contig7325:3265..3483Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7325 3266..3483 -
1696842396.6771693-CDS-E_fasciculatus_S2_contig7325:5420..55831696842396.6771693-CDS-E_fasciculatus_S2_contig7325:5420..5583Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7325 5421..5583 -
1696842396.6919913-CDS-E_fasciculatus_S2_contig7325:6541..66931696842396.6919913-CDS-E_fasciculatus_S2_contig7325:6541..6693Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7325 6542..6693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7325.15516.1prot_E_fasciculatus_S2_contig7325.15516.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7325 99..6693 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7325.15516.1

>prot_E_fasciculatus_S2_contig7325.15516.1 ID=prot_E_fasciculatus_S2_contig7325.15516.1|Name=mRNA_E_fasciculatus_S2_contig7325.15516.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=342bp
GGDGGKRYCTVDELLPLERSPDSTVSSEWSEEQGGISTPPYGCDCASSKA
RYFCPNLGSGGYPRWVPRAVARGDCRSVTREEMSRGAPFPPDSKVLFYGN
SYMRQAVEAILCLFQKDVATKKVRFVSANATNTTYLEVPGDTPCRACWVW
HGFKDTLLKSGCIGGDGGDDHGGEEACRCDDDRGEFLFSNGAVMHFYFAD
RDEDKSITDALAPHDKVDFSDYTAVFANPGNNPSIKADAVLEAAFELQAA
GVPFFWLNVYEGKGDPQSWNSRQRETDFPGSGAKFVRVGDMAHGLQRLTR
KVVEQLEGYDPHFCMPGPPDEVGILLLKLLWALHHNKNGSY*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7325:99..6693-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7325.15516.1 ID=mRNA_E_fasciculatus_S2_contig7325.15516.1|Name=mRNA_E_fasciculatus_S2_contig7325.15516.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6595bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7325:99..6693- (Ectocarpus fasciculatus EfasUO2)
GGCGGCGACGGAGGCAAGCGGTACTGCACGGTGGACGAGCTGCTGCCGCT AGAGAGGTCGCCGGACAGCACGGTGTCGTCGGAGTGGTCGGAAGAGCAAG GGGGAATATCGACGCCCCCGTACGGATGCGACTGCGCGTCCTCGAAGGCT AGGTGAGGATAGGGACATACTGTGATGGGTGGAATCGTTTTAACATCGTG TTTTGCTGCAATGTACTACCGTCCTAGAGGGGAAAGTGAGGATAGGGCCA TGTTTGAGGGTGAAAATGGTAGCATTCCTCTGCTGCGACGACGAGTCCTC GAGGAGAAGGTGAGGATAGGGATAGGGACACGTTTATTGGTGTGAATCGA AATATGTTTTCCTGCGACTGCGTGTCCTTGAAGGGACGGCGACGATAGGA CATGCTTTGGGCGTGGAAATGGTAACATATTTTTCGACGGTTTGGCTTCC TCGAACGAAGGATTTCGGGAGGGAACTGCTTTTGAGTGGAGATTCTACCT TCCACACTTCAGCAGCAGACACCTGTGTACGGCTACGAAGTGAGAACCTC ACCTAATTTCAGCATGTTCTACTTCGGGTCAATTTTATTTCAGGATACCT TTTTTGGGGTAAGTTAGCCTGTGACCACGGGAATCGACCGCGTCAAGTGT TATCCTCTCGTTTGTCTTTTATGACAGCCTGCAGCAGTATAGTCTACGCG TGCAAGATTGTTCATTGTTGCTGTCTGTCTCCTGACGAAGCCCCAGCCGG CACGACGACACGACGTCGAGCCGCGCCAAGACGACCCGTCTCGACCTTAA CAACTCCCACGATTGTCCACGTTTATTTACCCCGTCCAGCGCTTCGAAAC CATATATACCCTCGTCGCTGAGCCGAACTAATTCTTTTTCATGGTGCGAC ATGCATCAACTCCCACGATCACACACCTTCACCTGTCCAACACTGTTGAA ACCATGCGTTTCCTCACCGCCGGGCCAATGTTCTTGCAGCATGCCCAACA GGTATATTGTTGTCCAAACCTGGGCAGCTGCGGGTAGAAAATCATACGCA CCCTCGTCGCCGAGCCAATGTTTCTTCTTTGGCGTGTGCGAACTGCCTGC ACCCACGCAGGTATTTTTGTCCAAACCTTGGCAGCGGTGGGTACCCCAGG TGGGTGCCGCGTGCCGTCGCTCGGGGCGACTGCAGGAGCGTCACGAGGGA AGAAATGTCAAGGGGAGCGCCGTTTCCGCCCGACTCGAAGGTCTTGTTCT ACGGGAACTCCTACATGCGGCAGGTGAAGCGCGGCTATTTGATTTGCTGG GCGTGGTGTCTTCAAGACAGACTCATTTATTACCCCCATTTCCCCGGTCG GTGTTTGCCATCAGGGTTGGGTTTTCGTCGCTTGGCAACGACGTTGTATA ACAAGCCGATCGCTTCGTGAACTCGACAACCAGGTTACCGCCTTTTTTCG CCTTTTGGTTTTTTGTTGCGGTGGCCATAATGGTGGTCGAGTAGAGATTG TGTTGTGCGGGGTCGAGAACGCTCACTCCGCGCAACGGGGATGATCGCAC CACGTTGTGTTAAATTGGCCAAGCACCCTCGAGGAAGTTACAAAGTGCTT ATGACTGTCTCTGGAAGTGAAAGCACCAGAAAGTATAATAAGCCATACGC AGCTATCATCCGTACCCAAGGAAGTAAGTACAAGATGCCGAACACCGTTA GCCGGATGAGCGCACCCTTCATGCGACTCTCCGAACACCTCACGGTGCTT CGCGCTTGGTGAGGTGAGAGCCTGGTCCGGTGAGAACCCGGCGTGCTCCG CCCCGGCTTTGTATGGATGCGAGGTCAATGATCTGATAACTACGGCATGC ACGACTATGAGTACCCCTCCCCCTCCGCTGCTCCGTCCCGGCTTTGTAGG GATGCGAGGTCAATGGTGTATAACGACTTTGGCATGCAACGTGTATATCC CCCCGCTGCCGTACCATTGATATTTACCACCTTGTTTGACTGTTTGACTA TATTATTATCTCGAGCAGGGTAGTAGTCTCTCTGTGATCGTGCGTATACT TTCCCTAAATTGCTGGGTTGATCGCACGGGAGACTTAAGCCCTGTCCGTT GACCCCCCTTTTCCGCGGAAAGCGAGAAACGTTCCGTACGTTGTCCACTG GGCGGCGGTAAGCAGTCGAAGAGTCACCCGATAACGTATGATTCGTCGAC GCTCAAGCGTTTCGTTCGGAACCAGAGTATTCGCCCCCTAGTTCTCCTTC TCCTTGCTTGTGTGCCCTGCTTTGGTTGCCGTCGTGTGCGGAGTATTTAT CGGCGTCACTGTGTAGCAGTATGCACCCCATTATGGGGGGTTCCACGGCC CTCCCTTGACCCCATCTATGACACGGGCACACATCCCATCTTGTTCTTTG GCCGAGGCGTTGTTCTTCTCCACCCCGTCCATCACTTGGACCCCTAGTCC CTTAGGGCCATTGTGTACAGCGCTGTTGTTTCCAAGAGTTAAGTTTGGAA AAGTTGTCGAAAAGTTAAAAAATTGTTTCGAAAATTCGGAAGCTTAGCAG CCCCCAATTCAATTCATTTGGAACAAGTAGTAGCTTCCAATTTGTTCCCT TGGACGAACGGGCTAGGGCAAACTTTTCCAGACTCCATAAACCTTTGGAA AAACCAGCGCTGTATAATCGGCCCTTTTTCTGTGGACGGGGTTGTTCTTT CGCGACCCCATCTATGACACGAACCCCTTACCCGTGAGTGATCTCCGGCG GCTTCGATCCTCGGCGGCCCGCACCTGTAATTTTCCCTGCTGCTTCCTCG AGCGGTCGGGGCTGTGCTGCATGTGCCTGTTTCCGGAACGACTTGTATTC ATACGTCGAAGGAGTTGCGGTTCGACCCCTTCCACCGCACGTTGCTCCAA AACCGTTTGTTCTTTGGCGGTCTTGATCTTCCGCTAACCCGCGCCTGCTG CAATCTCCGAAACCTCCGCTGCTGCTACTGCTGCTCCCGAAGGCGCTCGG GGCTGTACTGCTGTGCCGTTGTCCAAGAACGACTTATAGATTGCAGAATC TTCCACACCTTAACCCCCTGTTCTTCAGCGGTCTTGATCTCCCCTAATCT CCGAAATATCCGAAATATCCTCGTCTGCTGTTGCTGTTGTTGTTGCTGCT GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTAC TCTCCCGAAGGCGGTCGAGGCAATCCTGTGCCTCTTCCAGAAAGACGTAG CAACGAAGAAGGTGCGGTTTGTATCCGCCAACGCCACCAATACCACCTAC CTCGAGGTGCCCGGCGACACCCCGTGTCGCGCCTGCTGGGTCTGGCACGG GTTCAAGGACACCCTGCTGAAGTCGGGGTGCATCGGCGGCGACGGTGGTG ACGATCATGGCGGCGAGGAGGCATGCAGGTGGGGGGTGGGTAGTGCCGAA AAGTTGACACATGCTATTCTTTCTCTCATTCTATCATGTTGTGGTCTCCT CGGAGTAGTTTGTACCCTATTTTTGTTTTGTTTTCCACGCGGCGTCGTGT GTGCCGTTTTTATTTGCGACCATGGGCTCCGGTTTTATTTGGGCTCCCCA CTTCTTTGTGGACTAGACTATAGAGCTAATGCGAAAAAAACATACGGTAG GCCGCGCCCCCTGGACCGATTTTCAAAAGCTCGAGAACTCCACGACAAAA AGGGGTTGTTTTAAAACGTCAGGCGATCTATTTTCGGATTTAGCTCTCGA CGACACGGTTACCACACCACCACTTGTCTCCCAAAAAGCCAAAAACCAAT TAATAATTAAATTATCACACACAGAAAAACGAATAATTTTTCGGCACCGC TACTGTACGTACTCTCGCTATGTGTACCGTGGAGAAATCGACTCTTGACA ATTAGTCCAGGGGGTGTGGTAGCCCCTGTAACGTACGGTAGGGTCGGGGG CCCTTGGAGGAAGACGAGTTTGAGGCACGTTCTGTCCGTGCGAAAGAGGC GGTACTGCTTTTGTCGCCCCGCCTTTCTCCGCAGTGATTTTTGCACAGCC AGTCCGGCGTTTTTCACAGGAGATGTTTGTCGTTGTTGCCTCTTTGTGAT CATGCGCACGCACAAGCCCAGAAAATCTACGAAAGGGAAGGGTGCAAGCA CCGAAGGAAGGCATCACAACAAGAGTATATAGATAACATATTGTCGTAAT CTAAAATCCTGTGTGAGCTTCTTCCTGTGTCCCGGCTGATATGTCAAGCT TTTGTGCACCGAAAGATCAGGGGTAGGCAATGCGATTATTGTATTCATGC AACCTGAGAAACTGAGAAACGCCAAGTTCCGCTCGTGGCGGTGTCATCGA CGGCGCCCGCAGTAGATTAGAGAAGGAGCGAAGTAGCAGCAGCGGCCAAC CGCTACAGTCCCCGGCGGATTTAGTGGTGCAAGGCCACTTCTTGGCCGCA TGTTGTCTGGTTTTCTGGCAAAGGTTTGGTGGTGGCTGGGTCGCCCTTCG CGTGCAAGCCGTTCTGCGCCGCGTGCTGTTTGGTTCTTGCAAAGGTTGAC GTTGCTGGTGCCGGGTCGTCCTTCGCATGCATTGATCACCGCACACTGGT TCATCCCTGAAAGAAGGGTGGTGGTTGGGGTTGGTTGTCCATTGCATGCA ATGTCTACCGTCGGTTGCTAAGATATCTCACTCCCTGGACCGATTTTCAG ATCTCGACTACTATGCAGGATATGCAGCTACGGTGCCGAAAAGGTGGCGG AAGGCGTTGGAACCATCTCGTCGAGAGTTTTGCGAAAACGTTTCGTCTTG TACTTGTAAAATCATCTGTTTGTCCCCGTGCTTTTCGTTCTTTGTTCGAT ATCGTATGTATGTGCTATTAAGTGCAATTGTCAACTATATTTTCCAAAAT ACGAACTACTTTGACCCACCCACGATGCTCCCATGGGCCCGTATGTATCC GACTTGTTTTTTTGTTTCGTCGGGTTTTGTAAATACCGCTCGGTGGACAC TCTCTCCCAGGTGCGACGACGATAGAGGCGAGTTCTTGTTCTCCAACGGG GCCGTCATGCACTTCTACTTCGCCGACCGCGACGAGGACAAGAGCATCAC TGACGCGCTGGCGCCGCACGACAAGGTAGACTTCTCCGACTACACCGCCG TTTTCGCGAACCCGGGGAATAATCCGAGCATCAAGGCGGACGCGGTGCTG GAAGCTGCGTTCGAGCTTCAGGCCGCCGGGGTGGGTGTCTTTTTTTTTCT TTTTCCCTCCCATTATTTGACTCTGGGTGTGCTGCACTGACTGGCTCGTG TCCGCTTCTGTGAAGTGAAATTTCGGATTGTTCGCACATGTCGAGACATC GTGGGAGTGTCGTTGATGGCTTCTCGGATCGTGTTTGTCGTTTTTGTTGT AGCCTTCTAGTTTGTGGCGGTTTTGGCACTCTGTGAGAGGATCTAGGCTG GAGATGCTGCGCCGAGGCCCAAAGCTAACATTTTTGATTGCACGCTTCCA AACCTGTGAGTTGCTTTGTTCAAGCAAACCAGGTATGGCACGGTCTGATC AATGATATCTTTTGTCATGCTCGAGGCTGTTCTGGGACGCGGGAGGCACA AATACGGGTTGTATTTCATTGTTCAGGTGGGACTGGCGGGGGTAACCCCC TGAGCTCCTCGAAAGACCACCGCCGTACATCGTACGTACGTCCCGGTGGA GCAAACTGGGGGCCAATACAAGTAGGGTTCAACAAATGTCTTGCCGTTTG GTACACCCAACTTCCCTCCGACTCTTCTCGAACACCTGGAGTTGAAAGTG TACCGTCGTTGCTGTGCCGCCGGGGCAACGGAGCACCGTGTACGGCGGCG GTCTACTCGCGCGCGGCAAGCACGACGTCGTGGGGGGAAACATCGACACG AGGCGGCACGCATGTGCATGCGGTGTCTTTGTGTCGGGACAGTTCTTCTG TTGTAGATATTCTTACACGTTCTTCCCGCCTTTCAGAACGCAGCAAGCAG CCCCACTCCCAGAACCTCTTGCTTAGGCCTAGGCTCTCGTATTTTGTTTC CTCCTTGAGGTAACCCCGATAGCGATTCTGCAGGCAAGTGCGGCGTTCCT TCATTGAGCACCTGTTCGTGTGACCAAGTCCACAGGTTTTAAGTTTGGTT AAAACTTAAGCCTACTTCTTCCCAGCACTCCCCCCTCCCGCCTCCGCCGT CCGGTCCATTTTGGATCTCACGCCGGAGAGGTTCCCAGCCAGATTGTTAT TGTGCGGTTGCGCCCTCCCCTCCCTTGTTGCCCTCCAACGCTTGCCTTCT TTGCCCTCCTCGCTCGCCGCAGGTACCCTTCTTCTGGCTTAACGTCTACG AGGGGAAAGGGGACCCGCAGAGCTGGAACTCCCGGCAGAGGGAGACCGAC TTTCCGGGGTCCGGGGCGAAGTTCGTCCGCGTGGGCGACATGGCCCACGG CCTCCAGAGGCTGACGAGGAAAGTGGTGGAGCAGTTGGAAGGTTACGACC CGCACTTCTGCATGCCGGGTCCTCCGGACGAGGTTGGGATCCTGCTGCTG AAGCTTCTGTGGGCCCTGCACCACAACAAGAACGGCTCCTACTGA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7325:99..6693-

>mRNA_E_fasciculatus_S2_contig7325.15516.1 ID=mRNA_E_fasciculatus_S2_contig7325.15516.1|Name=mRNA_E_fasciculatus_S2_contig7325.15516.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1026bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7325:99..6693- (Ectocarpus fasciculatus EfasUO2)
GGCGGCGACGGAGGCAAGCGGTACTGCACGGTGGACGAGCTGCTGCCGCT
AGAGAGGTCGCCGGACAGCACGGTGTCGTCGGAGTGGTCGGAAGAGCAAG
GGGGAATATCGACGCCCCCGTACGGATGCGACTGCGCGTCCTCGAAGGCT
AGGTATTTTTGTCCAAACCTTGGCAGCGGTGGGTACCCCAGGTGGGTGCC
GCGTGCCGTCGCTCGGGGCGACTGCAGGAGCGTCACGAGGGAAGAAATGT
CAAGGGGAGCGCCGTTTCCGCCCGACTCGAAGGTCTTGTTCTACGGGAAC
TCCTACATGCGGCAGGCGGTCGAGGCAATCCTGTGCCTCTTCCAGAAAGA
CGTAGCAACGAAGAAGGTGCGGTTTGTATCCGCCAACGCCACCAATACCA
CCTACCTCGAGGTGCCCGGCGACACCCCGTGTCGCGCCTGCTGGGTCTGG
CACGGGTTCAAGGACACCCTGCTGAAGTCGGGGTGCATCGGCGGCGACGG
TGGTGACGATCATGGCGGCGAGGAGGCATGCAGGTGCGACGACGATAGAG
GCGAGTTCTTGTTCTCCAACGGGGCCGTCATGCACTTCTACTTCGCCGAC
CGCGACGAGGACAAGAGCATCACTGACGCGCTGGCGCCGCACGACAAGGT
AGACTTCTCCGACTACACCGCCGTTTTCGCGAACCCGGGGAATAATCCGA
GCATCAAGGCGGACGCGGTGCTGGAAGCTGCGTTCGAGCTTCAGGCCGCC
GGGGTACCCTTCTTCTGGCTTAACGTCTACGAGGGGAAAGGGGACCCGCA
GAGCTGGAACTCCCGGCAGAGGGAGACCGACTTTCCGGGGTCCGGGGCGA
AGTTCGTCCGCGTGGGCGACATGGCCCACGGCCTCCAGAGGCTGACGAGG
AAAGTGGTGGAGCAGTTGGAAGGTTACGACCCGCACTTCTGCATGCCGGG
TCCTCCGGACGAGGTTGGGATCCTGCTGCTGAAGCTTCTGTGGGCCCTGC
ACCACAACAAGAACGGCTCCTACTGA
back to top