mRNA_E_fasciculatus_S2_contig7320.15513.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7320.15513.1
Unique NamemRNA_E_fasciculatus_S2_contig7320.15513.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7320.15513.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA9_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 3.690e-62
Identity = 102/117 (87.18%), Postives = 109/117 (93.16%), Query Frame = 1 
Query:    1 LFLFSQFQGIVLARRLHFVGQVWNIVWSTLVLFGFFREGNALSIIVALIIYPIFVFYMACFLRLLSELSVSVLLLPSLLAKSQGQGGRGAVAEPVGRGDADLAAYGVSGVDDSGTIV 351
            LF+F  FQGIVLARRLHFVGQVWN+VWSTLVLFG  REG AL IIVA+I+YPIFVFYMACFLRL+SEL+VSVLLLPSLLAKSQG GGRGAVAEPVG GDADLAAYGVSGVDD+GTIV
Sbjct:   26 LFVFRHFQGIVLARRLHFVGQVWNVVWSTLVLFGILREGTALGIIVAIIVYPIFVFYMACFLRLMSELAVSVLLLPSLLAKSQGNGGRGAVAEPVGVGDADLAAYGVSGVDDAGTIV 142
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BLAST of mRNA_E_fasciculatus_S2_contig7320.15513.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L548_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 3.380e-58
Identity = 99/117 (84.62%), Postives = 106/117 (90.60%), Query Frame = 1 
Query:    1 LFLFSQFQGIVLARRLHFVGQVWNIVWSTLVLFGFFREGNALSIIVALIIYPIFVFYMACFLRLLSELSVSVLLLPSLLAKSQGQGGRGAVAEPVGRGDADLAAYGVSGVDDSGTIV 351
            LF F  FQGIVLARRLH+V QVWN+VWSTLVL   FREGN L+IIVA+IIYPIFVFYMACFLRL+SEL+VSVLLLPSLLAKSQG GGRGAVAEPVG GDADLAAYGVSGVD +GTIV
Sbjct:   26 LFAFRHFQGIVLARRLHYVAQVWNVVWSTLVLSTVFREGNPLAIIVAIIIYPIFVFYMACFLRLMSELTVSVLLLPSLLAKSQGNGGRGAVAEPVGVGDADLAAYGVSGVDGAGTIV 142
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7320.15513.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.690e-6287.18protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.380e-5884.62protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7320contigE_fasciculatus_S2_contig7320:7147..7500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size354
Hectar predicted targeting categorysignal anchor
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_005480.1
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842396.3624876-CDS-E_fasciculatus_S2_contig7320:7146..75001696842396.3624876-CDS-E_fasciculatus_S2_contig7320:7146..7500Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7320 7147..7500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7320.15513.1prot_E_fasciculatus_S2_contig7320.15513.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7320 7147..7500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7320.15513.1

>prot_E_fasciculatus_S2_contig7320.15513.1 ID=prot_E_fasciculatus_S2_contig7320.15513.1|Name=mRNA_E_fasciculatus_S2_contig7320.15513.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=118bp
LFLFSQFQGIVLARRLHFVGQVWNIVWSTLVLFGFFREGNALSIIVALII
YPIFVFYMACFLRLLSELSVSVLLLPSLLAKSQGQGGRGAVAEPVGRGDA
DLAAYGVSGVDDSGTIV*
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mRNA from alignment at E_fasciculatus_S2_contig7320:7147..7500-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7320.15513.1 ID=mRNA_E_fasciculatus_S2_contig7320.15513.1|Name=mRNA_E_fasciculatus_S2_contig7320.15513.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=354bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7320:7147..7500- (Ectocarpus fasciculatus EfasUO2)
TTGTTCTTATTTTCACAGTTCCAAGGCATTGTTCTGGCGCGTAGATTGCA
CTTCGTCGGTCAGGTGTGGAACATTGTGTGGTCGACGCTGGTACTATTCG
GGTTCTTCAGGGAGGGAAACGCACTCAGCATCATAGTCGCGCTCATCATC
TACCCCATCTTCGTCTTCTACATGGCCTGCTTCCTCCGGCTCTTGTCCGA
GCTGTCCGTGTCCGTGCTGCTCTTGCCGAGTCTCCTGGCTAAGAGCCAAG
GACAGGGAGGGAGAGGGGCGGTGGCAGAGCCCGTCGGCAGAGGCGATGCT
GACTTGGCGGCGTACGGTGTTTCTGGTGTTGACGACTCTGGCACGATTGT
ATGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7320:7147..7500-

>mRNA_E_fasciculatus_S2_contig7320.15513.1 ID=mRNA_E_fasciculatus_S2_contig7320.15513.1|Name=mRNA_E_fasciculatus_S2_contig7320.15513.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=354bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7320:7147..7500- (Ectocarpus fasciculatus EfasUO2)
TTGTTCTTATTTTCACAGTTCCAAGGCATTGTTCTGGCGCGTAGATTGCA
CTTCGTCGGTCAGGTGTGGAACATTGTGTGGTCGACGCTGGTACTATTCG
GGTTCTTCAGGGAGGGAAACGCACTCAGCATCATAGTCGCGCTCATCATC
TACCCCATCTTCGTCTTCTACATGGCCTGCTTCCTCCGGCTCTTGTCCGA
GCTGTCCGTGTCCGTGCTGCTCTTGCCGAGTCTCCTGGCTAAGAGCCAAG
GACAGGGAGGGAGAGGGGCGGTGGCAGAGCCCGTCGGCAGAGGCGATGCT
GACTTGGCGGCGTACGGTGTTTCTGGTGTTGACGACTCTGGCACGATTGT
ATGA
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